comparison seurat.xml @ 5:06ed31cf52ed draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seurat commit 98e7666ee048ec249fd3f65854feab03168fadef"

4:82fcdf530f87

<tool id="seurat" name="Seurat" version="@TOOL_VERSION@">
    <description>- toolkit for exploration of single-cell RNA-seq data</description>
    <macros>
        <token name="@TOOL_VERSION@">3.1.5</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">r-seurat</requirement>
        <requirement type="package" version="2.1">r-rmarkdown</requirement>
        <!-- Need to pin pandoc due to https://github.com/rstudio/rmarkdown/issues/1740 -->
        <requirement type="package" version="2.7.3">pandoc</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
#if "vln" in $meta.plots:
    #set $vln = 'T'
#else

5:06ed31cf52ed

<tool id="seurat" name="Seurat" version="@TOOL_VERSION@+galaxy1">
    <description>- toolkit for exploration of single-cell RNA-seq data</description>
    <macros>
        <token name="@TOOL_VERSION@">3.1.5</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">r-seurat</requirement>
        <requirement type="package" version="2.2">r-rmarkdown</requirement>
        <!-- Need to pin R-base due to
*** caught segfault ***
address (nil), cause 'memory not mapped'

Traceback:
 1: cairoVersion()
 2: grSoftVersion()
        -->
        <requirement type="package" version="3.6">r-base</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
#if "vln" in $meta.plots:
    #set $vln = 'T'
#else