comparison seurat.xml @ 2:321bdd834266 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seurat commit 3cf715ec11e2c9944f46572e324e5b2db5aa151f"

1:7319f83ae734

<tool id="seurat" name="Seurat" version="2.3.4">
    <description>- toolkit for exploration of single-cell RNA-seq data</description>
    <requirements>
        <requirement type="package" version="3.1.0">r-seurat</requirement>
        <requirement type="package" version="1.16">r-rmarkdown</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
#if "vln" in $meta.plots:
    #set $vln = 'T'
#else

2:321bdd834266

<tool id="seurat" name="Seurat" version="@TOOL_VERSION@">
    <description>- toolkit for exploration of single-cell RNA-seq data</description>
    <macros>
        <token name="@TOOL_VERSION@">3.1.2</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">r-seurat</requirement>
        <requirement type="package" version="2.0">r-rmarkdown</requirement>
        <!-- Need to pin pandoc due to https://github.com/rstudio/rmarkdown/issues/1740 -->
        <requirement type="package" version="2.7.3">pandoc</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
#if "vln" in $meta.plots:
    #set $vln = 'T'
#else