Mercurial > repos > iuc > seurat

diff Seurat.R @ 9:c4db6ec33fec draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seurat commit 7681c9101062f58ac4eb296a98b1644d4ed2340a"
author iuc
date Thu, 21 Oct 2021 15:57:20 +0000
parents 764f076e9d52
children fab6ff46e019
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--- a/Seurat.R	Thu Jun 10 17:19:49 2021 +0000
+++ b/Seurat.R	Thu Oct 21 15:57:20 2021 +0000
@@ -115,6 +115,6 @@
 #+ echo = `showcode`, warning = `warn`, include = `heatmaps`
 markers <- Seurat::FindAllMarkers(seuset, only.pos = TRUE, min.pct = min_pct, logfc.threshold = logfc_threshold)
 top10 <- dplyr::group_by(markers, cluster)
-top10 <- dplyr::top_n(top10, 10, avg_logFC)
+top10 <- dplyr::top_n(top10, 10, avg_log2FC)
 Seurat::DoHeatmap(seuset, features = top10$gene)
 # nolint end