Mercurial > repos > iuc > seurat
changeset 5:06ed31cf52ed draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seurat commit 98e7666ee048ec249fd3f65854feab03168fadef"
author | iuc |
---|---|
date | Mon, 08 Jun 2020 17:40:51 -0400 |
parents | 82fcdf530f87 |
children | 764f076e9d52 |
files | seurat.xml |
diffstat | 1 files changed, 11 insertions(+), 4 deletions(-) [+] |
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--- a/seurat.xml Mon May 04 13:56:11 2020 -0400 +++ b/seurat.xml Mon Jun 08 17:40:51 2020 -0400 @@ -1,13 +1,20 @@ -<tool id="seurat" name="Seurat" version="@TOOL_VERSION@"> +<tool id="seurat" name="Seurat" version="@TOOL_VERSION@+galaxy1"> <description>- toolkit for exploration of single-cell RNA-seq data</description> <macros> <token name="@TOOL_VERSION@">3.1.5</token> </macros> <requirements> <requirement type="package" version="@TOOL_VERSION@">r-seurat</requirement> - <requirement type="package" version="2.1">r-rmarkdown</requirement> - <!-- Need to pin pandoc due to https://github.com/rstudio/rmarkdown/issues/1740 --> - <requirement type="package" version="2.7.3">pandoc</requirement> + <requirement type="package" version="2.2">r-rmarkdown</requirement> + <!-- Need to pin R-base due to +*** caught segfault *** +address (nil), cause 'memory not mapped' + +Traceback: + 1: cairoVersion() + 2: grSoftVersion() + --> + <requirement type="package" version="3.6">r-base</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ #if "vln" in $meta.plots: