comparison macros.xml @ 1:51eb02d9b17a draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seurat_v5 commit 566984b588e88225f0b3f2dae88c6fd084315e7c

0:94f1b9c7286f

<macros>
    <token name="@TOOL_VERSION@">5.0</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <token name="@PROFILE@">23.0</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">r-seurat</requirement>
            <requirement type="package" version="1.2.1">fit-sne</requirement>
            <requirement type="package" version="3.58.1">bioconductor-limma</requirement>

        <data name="inspect_general" format="txt" from_work_dir="inspect.txt" label="${tool.name} Inspect General on ${on_string}">
            <filter>method['method'] == 'Inspect' and method['inspect']['inspect'] == 'General'</filter>
        </data>
    </xml>
    <token name="@CMD_inspect_rds_outputs@"><![CDATA[
write.table(inspect, 'inspect_out.tab', sep="\t", col.names = col.names, row.names = row.names, quote = FALSE)    
    ]]>
    </token>
    <xml name="plot_out">
        <data name="plot_out_png" format="png" from_work_dir="plot.png" label="${tool.name} (${method.method}) on ${on_string}: png plot">
            <filter>plot_format == 'png'</filter>

1:51eb02d9b17a

<macros>
    <token name="@TOOL_VERSION@">5.0</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <token name="@PROFILE@">23.0</token>
    <xml name="bio_tools">
        <xrefs>
            <xref type="bio.tools">seurat</xref>
        </xrefs>
      </xml>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">r-seurat</requirement>
            <requirement type="package" version="1.2.1">fit-sne</requirement>
            <requirement type="package" version="3.58.1">bioconductor-limma</requirement>

        <data name="inspect_general" format="txt" from_work_dir="inspect.txt" label="${tool.name} Inspect General on ${on_string}">
            <filter>method['method'] == 'Inspect' and method['inspect']['inspect'] == 'General'</filter>
        </data>
    </xml>
    <token name="@CMD_inspect_rds_outputs@"><![CDATA[
write.table(inspect, 'inspect_out.tab', sep="\t", col.names = col.names, row.names = row.names, quote = FALSE)
    ]]>
    </token>
    <xml name="plot_out">
        <data name="plot_out_png" format="png" from_work_dir="plot.png" label="${tool.name} (${method.method}) on ${on_string}: png plot">
            <filter>plot_format == 'png'</filter>