comparison neighbors_clusters_markers.xml @ 1:51eb02d9b17a draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seurat_v5 commit 566984b588e88225f0b3f2dae88c6fd084315e7c

0:94f1b9c7286f

<tool id="seurat_clustering" name="Seurat Find Clusters" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>- Neighbors and Markers</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <expand macro="version_command"/>
    <command detect_errors="exit_code"><![CDATA[
@CMD@
    ]]></command>

<https://satijalab.org/seurat/reference/findneighbors>`__

FindMultiModalNeighbors
=======================

This function will construct a weighted nearest neighbor (WNN) graph for two modalities (e.g. RNA-seq and CITE-seq). For each cell, we identify the nearest neighbors based on a weighted combination of two modalities. 

Takes as input two dimensional reductions, one computed for each modality.

More details on the `seurat documentation
<https://satijalab.org/seurat/reference/findmultimodalneighbors>`__

1:51eb02d9b17a

<tool id="seurat_clustering" name="Seurat Find Clusters" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>- Neighbors and Markers</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="bio_tools"/>
    <expand macro="requirements"/>
    <expand macro="version_command"/>
    <command detect_errors="exit_code"><![CDATA[
@CMD@
    ]]></command>

<https://satijalab.org/seurat/reference/findneighbors>`__

FindMultiModalNeighbors
=======================

This function will construct a weighted nearest neighbor (WNN) graph for two modalities (e.g. RNA-seq and CITE-seq). For each cell, we identify the nearest neighbors based on a weighted combination of two modalities.

Takes as input two dimensional reductions, one computed for each modality.

More details on the `seurat documentation
<https://satijalab.org/seurat/reference/findmultimodalneighbors>`__