diff configs/Nanopore-UL-iterative-Sep2020.conf @ 0:60573349e9ae draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/shasta commit 6d14992ea4fb1af09373d51b3a48166afcbd3a74"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/configs/Nanopore-UL-iterative-Sep2020.conf	Wed Nov 11 21:54:51 2020 +0000
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+# This configuration file is EXPERIMENTAL and should only
+# be used under the following conditions:
+# - Nanopore reads created by Guppy 3.6.0 or newer.
+# - Ultra-Long (UL) reads with typical N50 80Kb or more.
+# - High coverage 80X.
+# Iterative assembly results in some separation of haplotypes
+# and does better at resolving segmental duplications.
+
+[Reads]
+minReadLength = 30000 
+noCache = True
+
+[Kmers]
+k = 10 
+
+[MinHash]
+minBucketSize = 10 
+maxBucketSize = 40 
+minFrequency = 5 
+
+[Align]
+alignMethod = 3 
+matchScore = 6
+gapScore = -3 
+downsamplingFactor = 0.05 
+maxSkip = 100
+maxDrift = 100
+maxTrim = 100
+minAlignedMarkerCount = 10
+minAlignedFraction = 0.1
+sameChannelReadAlignment.suppressDeltaThreshold = 30 
+
+[ReadGraph]
+maxAlignmentCount = 12
+creationMethod = 2
+
+[MarkerGraph]
+minCoveragePerStrand = 3
+simplifyMaxLength = 10,100
+crossEdgeCoverageThreshold = 3 
+
+[Assembly]
+detangleMethod = 2 
+consensusCaller = Bayesian:guppy-3.6.0-a
+iterative = True
+