# HG changeset patch
# User iuc
# Date 1593694683 14400
# Node ID 83ead2be47b21be586f33838e96d9bd8eab3e9f4
# Parent  8d1af5db538dbc901af3da0b26fe9b84e2932df7
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/shovill commit f667915d861dbf0a25cc8fd132cc956d82e73ee9"

diff -r 8d1af5db538d -r 83ead2be47b2 shovill.xml
--- a/shovill.xml	Sun Jun 28 04:16:16 2020 -0400
+++ b/shovill.xml	Thu Jul 02 08:58:03 2020 -0400
@@ -1,7 +1,7 @@
-<tool id="shovill" name="Shovill" version="@TOOL_VERSION@+galaxy1">
+<tool id="shovill" name="Shovill" version="@TOOL_VERSION@+galaxy0">
     <description>Faster SPAdes assembly of Illumina reads</description>
     <macros>
-        <token name="@TOOL_VERSION@">1.0.4</token>
+        <token name="@TOOL_VERSION@">1.1.0</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">shovill</requirement>
@@ -114,8 +114,8 @@
             </output>
             <output name="shovill_std_log" ftype="txt" >
                 <assert_contents>
-                    <has_text text="[mash]"/>
-                    <has_text text="[lighter] Processed 1714 reads"/>
+                    <has_text text="Read stats: total_bp = 300000"/>
+                    <has_text text="[lighter] Processed 820 reads"/>
                     <has_text text="[FLASH] FLASH v1.2.11 complete!"/>
                     <has_text text="[spades] ======= SPAdes pipeline finished."/>
                 </assert_contents>
@@ -140,9 +140,8 @@
             </output>
             <output name="shovill_std_log" ftype="txt" >
                 <assert_contents>
-                    <has_text text="[mash] Writing to"/>
                     <has_text text="[trimmomatic] TrimmomaticPE: Completed successfully"/>
-                    <has_text text="[lighter] Processed 2000 reads:"/>
+                    <has_text text="[lighter] Processed"/>
                     <has_text text="[FLASH] FLASH v1.2.11 complete!"/>
                     <has_text text="[spades] ======= SPAdes pipeline finished."/>
                     <has_text text="[bwa+samtools-sort] [samclip] Done."/>
@@ -163,10 +162,10 @@
             </output>
             <output name="shovill_std_log" ftype="txt" >
                 <assert_contents>
-                    <has_text text="[mash]"/>
-                    <has_text text="[lighter] Processed 1714 reads"/>
+                    <has_text text="[lighter] Processed"/>
                     <has_text text="[FLASH] FLASH v1.2.11 complete!"/>
                     <has_text_matching expression="\[megahit\] .* ALL DONE"/>
+                    <has_text text="[shovill] Done."/>
                 </assert_contents>
             </output>
         </test>
@@ -182,10 +181,10 @@
             </output>
             <output name="shovill_std_log" ftype="txt" >
                 <assert_contents>
-                    <has_text text="[mash]"/>
-                    <has_text text="[lighter] Processed 1714 reads"/>
+                    <has_text text="[lighter] Processed"/>
                     <has_text text="[FLASH] FLASH v1.2.11 complete!"/>
                     <has_text text="[skesa] DONE"/>
+                    <has_text text="[shovill] Done."/>
                 </assert_contents>
             </output>
         </test>
@@ -201,10 +200,10 @@
             </output>
             <output name="shovill_std_log" ftype="txt" >
                 <assert_contents>
-                    <has_text text="[mash]"/>
-                    <has_text text="[lighter] Processed 1714 reads"/>
+                    <has_text text="[lighter] Processed"/>
                     <has_text text="[FLASH] FLASH v1.2.11 complete!"/>
                     <has_text text="[velvetg] Final graph has"/>
+                    <has_text text="[shovill] Done."/>
                 </assert_contents>
             </output>
         </test>
@@ -220,10 +219,10 @@
             </output>
             <output name="shovill_std_log" ftype="txt" >
                 <assert_contents>
-                    <has_text text="[mash]"/>
-                    <has_text text="[lighter] Processed 1714 reads"/>
+                    <has_text text="[lighter] Processed"/>
                     <has_text text="[FLASH] FLASH v1.2.11 complete!"/>
                     <has_text text="[spades] ======= SPAdes pipeline finished."/>
+                    <has_text text="[shovill] Done."/>
                 </assert_contents>
             </output>
         </test>