Mercurial > repos > iuc > sickle
view tool_dependencies.xml @ 2:013275060443 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sickle commit 9cf2e1454bf23a11ca0e7eeb26b4eaa446832bf8-dirty
author | iuc |
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date | Wed, 09 Nov 2016 05:54:27 -0500 |
parents | a5f56370e870 |
children | 89c9361b93da |
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<?xml version="1.0"?> <tool_dependency> <package name="zlib" version="1.2.8"> <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="sickle" version="1.33"> <install version="1.0"> <actions> <action target_filename="sickle-1.33.tar.gz" type="download_by_url">https://github.com/najoshi/sickle/archive/v1.33.tar.gz</action> <action type="set_environment_for_install"> <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="zlib" version="1.2.8" /> </repository> </action> <action type="shell_command">make</action> <action type="move_file"> <source>sickle</source> <destination>$INSTALL_DIR/bin</destination> </action> <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> </action> </actions> </install> <readme> Sickle is a windowed adaptive trimming tool for FASTQ files using quality. </readme> </package> </tool_dependency>