# HG changeset patch
# User iuc
# Date 1577293768 18000
# Node ID 49b937f12aa465922e9465d9693672bb8972139a
# Parent fd62f1b940f6a32132ba0125de02e5e1bba1f4fe
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sina commit e94aa6daf5746ddd3798b8b3d8bc92094b03be90"
diff -r fd62f1b940f6 -r 49b937f12aa4 macros.xml
--- a/macros.xml Wed Oct 23 18:55:29 2019 -0400
+++ b/macros.xml Wed Dec 25 12:09:28 2019 -0500
@@ -1,10 +1,10 @@
1.5.0
- galaxy0
+ galaxy1
sina
-
\ No newline at end of file
+
diff -r fd62f1b940f6 -r 49b937f12aa4 sina.xml
--- a/sina.xml Wed Oct 23 18:55:29 2019 -0400
+++ b/sina.xml Wed Dec 25 12:09:28 2019 -0500
@@ -1,4 +1,4 @@
-
+
reference based multiple sequence alignment
macros.xml
@@ -11,18 +11,18 @@
#if $db.select == 'custom'
#if $db.custom.ext == 'fasta'
- sina -i '$db.custom' --prealigned -o ./reference.arb &&
+ sina -i '$db.custom' --prealigned -o reference.arb &&
#else
- ln -s '$db.custom' ./reference.arb &&
+ ln -s '$db.custom' reference.arb &&
#end if
#elif $db.select == 'local'
- ln -s '$db.arb_databases.fields.path' ./reference.arb &&
+ ln -s '$db.arb_databases.fields.path' reference.arb &&
#end if
## run
sina
--in='$in'
- --db=./reference.arb
+ --db=reference.arb
-p \${GALAXY_SLOTS:-4}
--num-pts=\${GALAXY_SLOTS:-4}
@@ -327,7 +327,7 @@
-
+