Mercurial > repos > iuc > slamdunk

diff alleyoop.xml @ 6:141f65f7c7c8 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/slamdunk commit 0502309b17c070efd9c8ab28e538279055835a45"
author iuc
date Tue, 13 Jul 2021 14:01:12 +0000
parents 57bf9a0d49a5
children 5a26589d95ad
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--- a/alleyoop.xml	Sat Jan 18 12:59:37 2020 -0500
+++ b/alleyoop.xml	Tue Jul 13 14:01:12 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="alleyoop" name="Alleyoop" version="@TOOL_VERSION@">
+<tool id="alleyoop" name="Alleyoop" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
     <description>- post-processing and QC of Slamdunk analyses</description>
     <macros>
         <import>macros.xml</import>
@@ -118,10 +118,10 @@
             <param name="mq" value="27" />
             <param name="bams" value="True" />
             <output_collection name="outputTCReads" count="2">
-                <element name="reads1" ftype="bam" file="reads1_TCReads.bam" />
+                <element name="reads1" ftype="bam" file="reads1_TCReads.bam" lines_diff="8"/>
             </output_collection>
             <output_collection name="outputbkgdReads" count="2">
-                <element name="reads1" ftype="bam" file="reads1_backgroundReads.bam" />
+                <element name="reads1" ftype="bam" file="reads1_backgroundReads.bam" lines_diff="8"/><!-- allow for diff in RG and PG lines -->
             </output_collection>
         </test>
     </tests>