diff macros.xml @ 1:57bf9a0d49a5 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/slamdunk commit dbd131d3a162e9d70c305148d305680acb549e93

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Sun Jan 20 06:51:15 2019 -0500
@@ -0,0 +1,42 @@
+<?xml version="1.0"?>
+<macros>
+    <token name="@TOOL_VERSION@">0.3.3</token>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">slamdunk</requirement>
+        </requirements>
+    </xml>
+    <xml name="reference_files">
+        <conditional name="reference_source">
+            <param name="reference_source_selector" type="select" label="Reference genome FASTA file" help="Select a built-in FASTA file (if available) or one from the history">
+                <option value="cached">Use a built-in FASTA</option>
+                <option value="history">Use a FASTA from history</option>
+            </param>
+            <when value="cached">
+                <param name="ref_file" type="select" label="Use built-in FASTA" help="Select genome from the list">
+                    <options from_data_table="all_fasta">
+                        <filter type="sort_by" column="2" />
+                        <validator type="no_options" message="No reference genomes are available" />
+                    </options>
+                    <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/>
+                </param>
+            </when>
+            <when value="history">
+                <param name="ref_file" type="data" format="fasta" label="Use the following dataset as the FASTA" help="You can upload a FASTA sequence to the history and use it as reference" />
+            </when>
+        </conditional>
+        <param name="Reference" type="data" format="bed" label="Reference 3'UTRs BED file" />
+    </xml>
+    <xml name="citations">
+        <citation type="bibtex">
+ @misc{Neumann2018,
+  author = {Neumann, Tobias},
+  year = {2018},
+  title = Slamdunk},
+  publisher = {GitHub},
+  journal = {GitHub repository},
+  url = {https://github.com/t-neumann/slamdunk},
+}
+        </citation>
+    </xml>
+</macros>
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