Mercurial > repos > iuc > slamdunk
diff slamdunk.xml @ 5:8b62f89924a7 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/slamdunk commit 64bbe6ec9a3f3cd6241fa4cf0e0548e0e67629a0"
author | iuc |
---|---|
date | Sat, 18 Jan 2020 12:59:37 -0500 |
parents | 24657d5edede |
children | 141f65f7c7c8 |
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--- a/slamdunk.xml Fri May 24 13:30:30 2019 -0400 +++ b/slamdunk.xml Sat Jan 18 12:59:37 2020 -0500 @@ -125,7 +125,7 @@ </output_collection> <output_collection name="outputTsv"> <element name="reads_slamdunk_mapped_filtered" ftype="tabular" file="reads_slamdunk_mapped_filtered_tcount.tsv" - lines_diff="2" /> + compare="re_match" /> </output_collection> <output_collection name="outputVcf"> <element name="reads_slamdunk_mapped_filtered" ftype="vcf" file="reads1_snp.vcf" compare="sim_size" /> @@ -134,6 +134,7 @@ <test> <!--Ensure built-in fasta works --> <param name="reference_source_selector" value="cached" /> + <param name="ref_file" value="hg38full" /> <param name="Reference" value="actb.bed" /> <param name="reads" ftype="fastqsanger" dbkey="hg38" value="reads.fq" /> <param name="readLength" value="100" /> @@ -148,7 +149,7 @@ </output_collection> <output_collection name="outputTsv"> <element name="reads_slamdunk_mapped_filtered" ftype="tabular" file="reads_slamdunk_mapped_filtered_tcount.tsv" - lines_diff="2" /> + compare="re_match" /> </output_collection> <output_collection name="outputVcf"> <element name="reads_slamdunk_mapped_filtered" ftype="vcf" file="reads1_snp.vcf" compare="sim_size" />