# HG changeset patch
# User iuc
# Date 1626184872 0
# Node ID 141f65f7c7c802f3ac5785bc5b8bb016e9b34d5b
# Parent  8b62f89924a7aa30d5da4d58a1bac92a3276b077
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/slamdunk commit 0502309b17c070efd9c8ab28e538279055835a45"

diff -r 8b62f89924a7 -r 141f65f7c7c8 alleyoop.xml
--- a/alleyoop.xml	Sat Jan 18 12:59:37 2020 -0500
+++ b/alleyoop.xml	Tue Jul 13 14:01:12 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="alleyoop" name="Alleyoop" version="@TOOL_VERSION@">
+<tool id="alleyoop" name="Alleyoop" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
     <description>- post-processing and QC of Slamdunk analyses</description>
     <macros>
         <import>macros.xml</import>
@@ -118,10 +118,10 @@
             <param name="mq" value="27" />
             <param name="bams" value="True" />
             <output_collection name="outputTCReads" count="2">
-                <element name="reads1" ftype="bam" file="reads1_TCReads.bam" />
+                <element name="reads1" ftype="bam" file="reads1_TCReads.bam" lines_diff="8"/>
             </output_collection>
             <output_collection name="outputbkgdReads" count="2">
-                <element name="reads1" ftype="bam" file="reads1_backgroundReads.bam" />
+                <element name="reads1" ftype="bam" file="reads1_backgroundReads.bam" lines_diff="8"/><!-- allow for diff in RG and PG lines -->
             </output_collection>
         </test>
     </tests>
diff -r 8b62f89924a7 -r 141f65f7c7c8 macros.xml
--- a/macros.xml	Sat Jan 18 12:59:37 2020 -0500
+++ b/macros.xml	Tue Jul 13 14:01:12 2021 +0000
@@ -1,6 +1,7 @@
 <?xml version="1.0"?>
 <macros>
     <token name="@TOOL_VERSION@">0.4.1</token>
+    <token name="@PROFILE@">20.05</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">slamdunk</requirement>
diff -r 8b62f89924a7 -r 141f65f7c7c8 slamdunk.xml
--- a/slamdunk.xml	Sat Jan 18 12:59:37 2020 -0500
+++ b/slamdunk.xml	Tue Jul 13 14:01:12 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="slamdunk" name="Slamdunk" version="@TOOL_VERSION@+galaxy2">
+<tool id="slamdunk" name="Slamdunk" version="@TOOL_VERSION@+galaxy3" profile="@PROFILE@">
     <description>- streamlining SLAM-seq analysis with ultra-high sensitivity</description>
     <macros>
         <import>macros.xml</import>