Mercurial > repos > iuc > smgu_frameshift_deletions_checks
view test-data/frameshift_deletions_check_no_english.tsv @ 1:029d90b0c4f6 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/smallgenomeutilities commit e702dcdbc7c3235ef3c4ee8998c7247d1af49465
| author | iuc |
|---|---|
| date | Fri, 14 Jul 2023 22:07:22 +0000 |
| parents | |
| children |
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ref_id start_position length VARIANT gene_region aa_position stop_mismatches stoploss_nt reads_all reads_fwd reads_rev deletions freq_del freq_del_fwd freq_del_rev deletions_fwd deletions_rev insertions freq_insert freq_insert_fwd freq_insert_rev insertions_fwd insertions_rev stops freq_stop freq_stop_fwd freq_stop_rev stops_fwd stops_rev matches_ref pos_critical_inserts pos_critical_dels homopolymeric ref_base cons_id NC_045512.2 5600 2 deletion ORF1ab . 0 . 40 40 0 23 0.575 0.575 0 23 0 0 0.0 0.0 0 0 0 0 0 0 0 0 0 17 21101 8740,18800 1 T NC_045512.2 NC_045512.2 5602 3 stopgain ORF1ab 1779 0 . 40 40 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 40 1.0 1.0 0 40 0 40 . . 0 T NC_045512.2 NC_045512.2 5635 3 stopgain ORF1ab 1790 0 . 40 40 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 40 1.0 1.0 0 40 0 40 . . 0 T NC_045512.2 NC_045512.2 5707 3 stopgain ORF1ab 1814 0 . 63 39 24 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 63 1.0 1.0 1.0 39 24 63 . . 0 T NC_045512.2 NC_045512.2 5713 3 stopgain ORF1ab 1816 0 . 72 39 33 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 72 1.0 1.0 1.0 39 33 72 . . 0 T NC_045512.2 NC_045512.2 5737 3 stopgain ORF1ab 1824 0 . 79 39 40 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 79 1.0 1.0 1.0 39 40 79 . . 0 T NC_045512.2 NC_045512.2 5740 3 stopgain ORF1ab 1825 0 . 79 39 40 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 79 1.0 1.0 1.0 39 40 79 . . 0 T NC_045512.2 NC_045512.2 5752 3 stopgain ORF1ab 1829 0 . 79 39 40 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 79 1.0 1.0 1.0 39 40 79 . . 0 T NC_045512.2 NC_045512.2 5773 3 stopgain ORF1ab 1836 0 . 78 38 40 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 78 1.0 1.0 1.0 38 40 78 . . 0 T NC_045512.2 NC_045512.2 5788 3 stopgain ORF1ab 1841 0 . 74 34 40 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 74 1.0 1.0 1.0 34 40 74 . . 0 T NC_045512.2 NC_045512.2 5911 3 stopgain ORF1ab 1882 0 . 45 5 40 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 45 1.0 1.0 1.0 5 40 45 . . 0 T NC_045512.2 NC_045512.2 6043 3 stopgain ORF1ab 1926 0 . 10 5 5 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 10 1.0 1.0 1.0 5 5 10 . . 0 T NC_045512.2 NC_045512.2 6049 3 stopgain ORF1ab 1928 0 . 10 5 5 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 10 1.0 1.0 1.0 5 5 10 . . 0 T NC_045512.2 NC_045512.2 6061 3 stopgain ORF1ab 1932 0 . 10 5 5 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 10 1.0 1.0 1.0 5 5 10 . . 0 T NC_045512.2 NC_045512.2 6064 3 stopgain ORF1ab 1933 0 . 10 5 5 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 10 1.0 1.0 1.0 5 5 10 . . 0 T NC_045512.2 NC_045512.2 6079 3 stopgain ORF1ab 1938 0 . 10 5 5 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 10 1.0 1.0 1.0 5 5 10 . . 0 T NC_045512.2 NC_045512.2 6082 3 stopgain ORF1ab 1939 0 . 10 5 5 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 10 1.0 1.0 1.0 5 5 10 . . 0 T NC_045512.2 NC_045512.2 6106 3 stopgain ORF1ab 1947 0 . 10 5 5 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 10 1.0 1.0 1.0 5 5 10 . . 0 T NC_045512.2 NC_045512.2 6202 3 stopgain ORF1ab 1979 0 . 86 81 5 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 86 1.0 1.0 1.0 81 5 86 . . 0 T NC_045512.2 NC_045512.2 6214 3 stopgain ORF1ab 1983 0 . 86 81 5 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 86 1.0 1.0 1.0 81 5 86 . . 0 T NC_045512.2 NC_045512.2 6226 3 stopgain ORF1ab 1987 0 . 86 81 5 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 86 1.0 1.0 1.0 81 5 86 . . 0 T NC_045512.2 NC_045512.2 6247 3 stopgain ORF1ab 1994 0 . 86 81 5 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 86 1.0 1.0 1.0 81 5 86 . . 0 T NC_045512.2 NC_045512.2 6259 3 stopgain ORF1ab 1998 0 . 81 81 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 81 1.0 1.0 0 81 0 81 . . 0 T NC_045512.2 NC_045512.2 6262 3 stopgain ORF1ab 1999 0 . 81 81 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 81 1.0 1.0 0 81 0 81 . . 0 T NC_045512.2 NC_045512.2 6274 3 stopgain ORF1ab 2003 0 . 80 80 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 80 1.0 1.0 0 80 0 80 . . 0 T NC_045512.2 NC_045512.2 6322 3 stopgain ORF1ab 2019 0 . 153 80 73 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 153 1.0 1.0 1.0 80 73 153 . . 0 T NC_045512.2 NC_045512.2 6340 3 stopgain ORF1ab 2025 0 . 157 80 77 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 157 1.0 1.0 1.0 80 77 157 . . 0 T NC_045512.2 NC_045512.2 6376 3 stopgain ORF1ab 2037 0 . 157 78 79 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 157 1.0 1.0 1.0 78 79 157 . . 0 T NC_045512.2 NC_045512.2 6409 3 stopgain ORF1ab 2048 0 . 152 71 81 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 152 1.0 1.0 1.0 71 81 152 . . 0 T NC_045512.2 NC_045512.2 6451 3 stopgain ORF1ab 2062 0 . 81 0 81 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 81 1.0 0 1.0 0 81 81 . . 0 T NC_045512.2 NC_045512.2 6457 3 stopgain ORF1ab 2064 0 . 81 0 81 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 81 1.0 0 1.0 0 81 81 . . 0 T NC_045512.2 NC_045512.2 6496 3 stopgain ORF1ab 2077 0 . 86 5 81 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 86 1.0 1.0 1.0 5 81 86 . . 0 T NC_045512.2 NC_045512.2 6508 3 stopgain ORF1ab 2081 0 . 86 5 81 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 86 1.0 1.0 1.0 5 81 86 . . 0 T NC_045512.2 NC_045512.2 6511 3 stopgain ORF1ab 2082 0 . 86 5 81 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 86 1.0 1.0 1.0 5 81 86 . . 0 T NC_045512.2 NC_045512.2 6655 3 stopgain ORF1ab 2130 0 . 10 5 5 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 10 1.0 1.0 1.0 5 5 10 . . 0 T NC_045512.2 NC_045512.2 6658 3 stopgain ORF1ab 2131 0 . 10 5 5 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 10 1.0 1.0 1.0 5 5 10 . . 0 T NC_045512.2 NC_045512.2 6682 3 stopgain ORF1ab 2139 0 . 10 5 5 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 10 1.0 1.0 1.0 5 5 10 . . 0 T NC_045512.2 NC_045512.2 6691 3 stopgain ORF1ab 2142 0 . 10 5 5 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 10 1.0 1.0 1.0 5 5 10 . . 0 T NC_045512.2 NC_045512.2 7342 3 stopgain ORF1ab 2359 0 . 173 169 4 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 173 1.0 1.0 1.0 169 4 173 . . 0 T NC_045512.2 NC_045512.2 7345 3 stopgain ORF1ab 2360 0 . 173 169 4 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 173 1.0 1.0 1.0 169 4 173 . . 0 T NC_045512.2 NC_045512.2 7372 3 stopgain ORF1ab 2369 0 . 173 169 4 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 173 1.0 1.0 1.0 169 4 173 . . 0 T NC_045512.2 NC_045512.2 7408 3 stopgain ORF1ab 2381 0 . 168 168 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 168 1.0 1.0 0 168 0 168 . . 0 T NC_045512.2 NC_045512.2 7477 3 stopgain ORF1ab 2404 0 . 330 167 163 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 330 1.0 1.0 1.0 167 163 330 . . 0 T NC_045512.2 NC_045512.2 7510 3 stopgain ORF1ab 2415 0 . 334 166 168 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 334 1.0 1.0 1.0 166 168 334 . . 0 T NC_045512.2 NC_045512.2 7513 3 stopgain ORF1ab 2416 0 . 333 165 168 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 333 1.0 1.0 1.0 165 168 333 . . 0 T NC_045512.2 NC_045512.2 7546 3 stopgain ORF1ab 2427 0 . 309 141 168 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 309 1.0 1.0 1.0 141 168 309 . . 0 T NC_045512.2 NC_045512.2 7555 3 stopgain ORF1ab 2430 0 . 289 121 168 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 289 1.0 1.0 1.0 121 168 289 . . 0 T NC_045512.2 NC_045512.2 7579 3 stopgain ORF1ab 2438 0 . 169 0 169 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 169 1.0 0 1.0 0 169 169 . . 0 T NC_045512.2 NC_045512.2 7588 3 stopgain ORF1ab 2441 0 . 169 0 169 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 169 1.0 0 1.0 0 169 169 . . 0 T NC_045512.2 NC_045512.2 7624 3 stopgain ORF1ab 2453 0 . 170 0 170 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 170 1.0 0 1.0 0 170 170 . . 0 T NC_045512.2 NC_045512.2 7630 3 stopgain ORF1ab 2455 0 . 170 0 170 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 170 1.0 0 1.0 0 170 170 . . 0 T NC_045512.2 NC_045512.2 7648 3 stopgain ORF1ab 2461 0 . 170 0 170 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 170 1.0 0 1.0 0 170 170 . . 0 T NC_045512.2 NC_045512.2 7660 3 stopgain ORF1ab 2465 0 . 176 6 170 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 176 1.0 1.0 1.0 6 170 176 . . 0 T NC_045512.2 NC_045512.2 7663 3 stopgain ORF1ab 2466 0 . 176 6 170 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 173 0.9829545454545454 1.0 0.9823529411764705 6 167 173 . . 0 T NC_045512.2 NC_045512.2 7666 3 stopgain ORF1ab 2467 0 . 176 6 170 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 176 1.0 1.0 1.0 6 170 176 . . 0 T NC_045512.2 NC_045512.2 7780 3 stopgain ORF1ab 2505 0 . 11 6 5 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 11 1.0 1.0 1.0 6 5 11 . . 0 T NC_045512.2 NC_045512.2 7783 3 stopgain ORF1ab 2506 0 . 11 6 5 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 11 1.0 1.0 1.0 6 5 11 . . 0 T NC_045512.2 NC_045512.2 7804 3 stopgain ORF1ab 2513 0 . 12 6 6 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 12 1.0 1.0 1.0 6 6 12 . . 0 T NC_045512.2 NC_045512.2 7831 3 stopgain ORF1ab 2522 0 . 12 6 6 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 12 1.0 1.0 1.0 6 6 12 . . 0 T NC_045512.2 NC_045512.2 7852 3 stopgain ORF1ab 2529 0 . 12 6 6 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 12 1.0 1.0 1.0 6 6 12 . . 0 T NC_045512.2 NC_045512.2 7855 3 stopgain ORF1ab 2530 0 . 12 6 6 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 12 1.0 1.0 1.0 6 6 12 . . 0 T NC_045512.2 NC_045512.2 7861 3 stopgain ORF1ab 2532 0 . 11 5 6 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 11 1.0 1.0 1.0 5 6 11 . . 0 T NC_045512.2 NC_045512.2 7999 3 stopgain ORF1ab 2578 0 . 23 23 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 23 1.0 1.0 0 23 0 23 . . 0 T NC_045512.2 NC_045512.2 8008 3 stopgain ORF1ab 2581 0 . 23 23 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 23 1.0 1.0 0 23 0 23 . . 0 T NC_045512.2 NC_045512.2 8011 3 stopgain ORF1ab 2582 0 . 23 23 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 23 1.0 1.0 0 23 0 23 . . 0 T NC_045512.2 NC_045512.2 8029 3 stopgain ORF1ab 2588 0 . 23 23 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 23 1.0 1.0 0 23 0 23 . . 0 T NC_045512.2 NC_045512.2 8038 3 stopgain ORF1ab 2591 0 . 23 23 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 23 1.0 1.0 0 23 0 23 . . 0 T NC_045512.2 NC_045512.2 8050 3 stopgain ORF1ab 2595 0 . 23 23 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 23 1.0 1.0 0 23 0 23 . . 0 T NC_045512.2 NC_045512.2 8071 3 stopgain ORF1ab 2602 0 . 23 23 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 23 1.0 1.0 0 23 0 23 . . 0 T NC_045512.2 NC_045512.2 8119 3 stopgain ORF1ab 2618 0 . 46 23 23 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 46 1.0 1.0 1.0 23 23 46 . . 0 T NC_045512.2 NC_045512.2 8191 3 stopgain ORF1ab 2642 0 . 42 19 23 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 42 1.0 1.0 1.0 19 23 42 . . 0 T NC_045512.2 NC_045512.2 8209 3 stopgain ORF1ab 2648 0 . 23 0 23 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 23 1.0 0 1.0 0 23 23 . . 0 T NC_045512.2 NC_045512.2 8221 3 stopgain ORF1ab 2652 0 . 23 0 23 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 23 1.0 0 1.0 0 23 23 . . 0 T NC_045512.2 NC_045512.2 8230 3 stopgain ORF1ab 2655 0 . 23 0 23 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 23 1.0 0 1.0 0 23 23 . . 0 T NC_045512.2 NC_045512.2 8248 3 stopgain ORF1ab 2661 0 . 23 0 23 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 23 1.0 0 1.0 0 23 23 . . 0 T NC_045512.2 NC_045512.2 8269 3 stopgain ORF1ab 2668 0 . 23 0 23 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 23 1.0 0 1.0 0 23 23 . . 0 T NC_045512.2 NC_045512.2 8275 3 stopgain ORF1ab 2670 0 . 23 0 23 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 23 1.0 0 1.0 0 23 23 . . 0 T NC_045512.2 NC_045512.2 8278 3 stopgain ORF1ab 2671 0 . 23 0 23 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 23 1.0 0 1.0 0 23 23 . . 0 T NC_045512.2 NC_045512.2 8296 3 stopgain ORF1ab 2677 0 . 23 0 23 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 23 1.0 0 1.0 0 23 23 . . 0 T NC_045512.2 NC_045512.2 8305 3 stopgain ORF1ab 2680 0 . 23 0 23 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 23 1.0 0 1.0 0 23 23 . . 0 T NC_045512.2 NC_045512.2 8656 3 stopgain ORF1ab 2797 0 . 10 10 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 10 1.0 1.0 0 10 0 10 . . 0 T NC_045512.2 NC_045512.2 8665 3 stopgain ORF1ab 2800 0 . 10 10 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 10 1.0 1.0 0 10 0 10 . . 0 T NC_045512.2 NC_045512.2 8677 3 stopgain ORF1ab 2804 0 . 10 10 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 10 1.0 1.0 0 10 0 10 . . 0 T NC_045512.2 NC_045512.2 8701 3 stopgain ORF1ab 2812 0 . 10 10 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 10 1.0 1.0 0 10 0 10 . . 0 T NC_045512.2 NC_045512.2 8719 3 stopgain ORF1ab 2818 0 . 10 10 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 10 1.0 1.0 0 10 0 10 . . 0 T NC_045512.2 NC_045512.2 8740 1 deletion ORF1ab . 0 . 20 10 10 10 0.5 0.5 0.5 5 5 0 0.0 0.0 0.0 0 0 0 0 0 0 0 0 10 21101 5600,5601,18800 1 T NC_045512.2 NC_045512.2 9791 3 stopgain ORF1ab 3175 1 . 23 0 23 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 23 1.0 0 1.0 0 23 0 . . 0 G NC_045512.2 NC_045512.2 18800 1 deletion ORF1ab . 0 . 111 54 57 66 0.5945945945945946 0.5925925925925926 0.5964912280701754 32 34 0 0.0 0.0 0.0 0 0 0 0 0 0 0 0 45 21101 5600,5601,8740 1 A NC_045512.2 NC_045512.2 18845 3 stopgain ORF1ab 6193 0 . 104 47 57 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 104 1.0 1.0 1.0 47 57 104 . . 0 T NC_045512.2 NC_045512.2 18866 3 stopgain ORF1ab 6200 0 . 57 0 57 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 57 1.0 0 1.0 0 57 57 . . 0 T NC_045512.2 NC_045512.2 18878 3 stopgain ORF1ab 6204 0 . 57 0 57 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 57 1.0 0 1.0 0 57 57 . . 0 T NC_045512.2 NC_045512.2 18932 3 stopgain ORF1ab 6222 0 . 65 8 57 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 65 1.0 1.0 1.0 8 57 65 . . 0 T NC_045512.2 NC_045512.2 18947 3 stopgain ORF1ab 6227 0 . 65 8 57 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 65 1.0 1.0 1.0 8 57 65 . . 0 T NC_045512.2 NC_045512.2 19076 3 stopgain ORF1ab 6270 0 . 16 8 8 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 16 1.0 1.0 1.0 8 8 16 . . 0 T NC_045512.2 NC_045512.2 19127 3 stopgain ORF1ab 6287 0 . 16 8 8 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 16 1.0 1.0 1.0 8 8 16 . . 0 T NC_045512.2 NC_045512.2 19301 3 stopgain ORF1ab 6345 0 . 104 104 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 104 1.0 1.0 0 104 0 104 . . 0 T NC_045512.2 NC_045512.2 19355 3 stopgain ORF1ab 6363 0 . 104 104 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 104 1.0 1.0 0 104 0 104 . . 0 T NC_045512.2 NC_045512.2 19415 3 stopgain ORF1ab 6383 0 . 201 101 100 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 201 1.0 1.0 1.0 101 100 201 . . 0 T NC_045512.2 NC_045512.2 19427 3 stopgain ORF1ab 6387 0 . 200 100 100 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 200 1.0 1.0 1.0 100 100 200 . . 0 T NC_045512.2 NC_045512.2 19442 3 stopgain ORF1ab 6392 0 . 197 96 101 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 197 1.0 1.0 1.0 96 101 197 . . 0 T NC_045512.2 NC_045512.2 19460 3 stopgain ORF1ab 6398 0 . 108 7 101 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 108 1.0 1.0 1.0 7 101 108 . . 0 T NC_045512.2 NC_045512.2 19475 3 stopgain ORF1ab 6403 0 . 103 0 103 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 103 1.0 0 1.0 0 103 103 . . 0 T NC_045512.2 NC_045512.2 19538 3 stopgain ORF1ab 6424 0 . 103 0 103 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 103 1.0 0 1.0 0 103 103 . . 0 T NC_045512.2 NC_045512.2 19541 3 stopgain ORF1ab 6425 0 . 103 0 103 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 103 1.0 0 1.0 0 103 103 . . 0 T NC_045512.2 NC_045512.2 19625 3 stopgain ORF1ab 6453 0 . 39 39 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 39 1.0 1.0 0 39 0 39 . . 0 T NC_045512.2 NC_045512.2 19649 3 stopgain ORF1ab 6461 0 . 40 39 1 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 40 1.0 1.0 1.0 39 1 40 . . 0 T NC_045512.2 NC_045512.2 19739 3 stopgain ORF1ab 6491 0 . 78 39 39 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 78 1.0 1.0 1.0 39 39 78 . . 0 T NC_045512.2 NC_045512.2 19778 3 stopgain ORF1ab 6504 0 . 77 38 39 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 77 1.0 1.0 1.0 38 39 77 . . 0 T NC_045512.2 NC_045512.2 19826 3 stopgain ORF1ab 6520 0 . 39 0 39 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 39 1.0 0 1.0 0 39 39 . . 0 T NC_045512.2 NC_045512.2 19871 3 stopgain ORF1ab 6535 0 . 108 69 39 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 108 1.0 1.0 1.0 69 39 108 . . 0 T NC_045512.2 NC_045512.2 19931 3 stopgain ORF1ab 6555 0 . 69 69 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 69 1.0 1.0 0 69 0 69 . . 0 T NC_045512.2 NC_045512.2 19940 3 stopgain ORF1ab 6558 0 . 69 69 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 68 0.9855072463768116 0.9855072463768116 0 68 0 68 . . 0 T NC_045512.2 NC_045512.2 20012 3 stopgain ORF1ab 6582 0 . 131 69 62 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 131 1.0 1.0 1.0 69 62 131 . . 0 T NC_045512.2 NC_045512.2 20084 3 stopgain ORF1ab 6606 0 . 133 64 69 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 133 1.0 1.0 1.0 64 69 133 . . 0 T NC_045512.2 NC_045512.2 20120 3 stopgain ORF1ab 6618 0 . 69 0 69 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 69 1.0 0 1.0 0 69 69 . . 0 T NC_045512.2 NC_045512.2 20135 3 stopgain ORF1ab 6623 0 . 69 0 69 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 69 1.0 0 1.0 0 69 69 . . 0 T NC_045512.2 NC_045512.2 20534 3 stopgain ORF1ab 6756 0 . 251 251 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 251 1.0 1.0 0 251 0 251 . . 0 T NC_045512.2 NC_045512.2 20537 3 stopgain ORF1ab 6757 0 . 251 251 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 251 1.0 1.0 0 251 0 251 . . 0 T NC_045512.2 NC_045512.2 20558 3 stopgain ORF1ab 6764 0 . 250 250 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 250 1.0 1.0 0 250 0 250 . . 0 T NC_045512.2 NC_045512.2 20579 3 stopgain ORF1ab 6771 0 . 250 250 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 250 1.0 1.0 0 250 0 250 . . 0 T NC_045512.2 NC_045512.2 20633 3 stopgain ORF1ab 6789 0 . 250 249 1 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 250 1.0 1.0 1.0 249 1 250 . . 0 T NC_045512.2 NC_045512.2 20723 3 stopgain ORF1ab 6819 0 . 442 194 248 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 442 1.0 1.0 1.0 194 248 442 . . 0 T NC_045512.2 NC_045512.2 20777 3 stopgain ORF1ab 6837 0 . 250 0 250 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 250 1.0 0 1.0 0 250 250 . . 0 T NC_045512.2 NC_045512.2 20780 3 stopgain ORF1ab 6838 0 . 250 0 250 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 250 1.0 0 1.0 0 250 250 . . 0 T NC_045512.2 NC_045512.2 20783 3 stopgain ORF1ab 6839 0 . 250 0 250 0 0.0 0 0.0 0 0 0 0.0 0 0.0 0 0 250 1.0 0 1.0 0 250 250 . . 0 T NC_045512.2 NC_045512.2 20819 3 stopgain ORF1ab 6851 0 . 275 24 251 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 275 1.0 1.0 1.0 24 251 275 . . 0 T NC_045512.2 NC_045512.2 20828 3 stopgain ORF1ab 6854 0 . 275 24 251 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 274 0.9963636363636363 1.0 0.9960159362549801 24 250 274 . . 0 T NC_045512.2 NC_045512.2 20834 3 stopgain ORF1ab 6856 0 . 275 24 251 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 275 1.0 1.0 1.0 24 251 275 . . 0 T NC_045512.2 NC_045512.2 20852 3 stopgain ORF1ab 6862 0 . 275 24 251 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 275 1.0 1.0 1.0 24 251 275 . . 0 T NC_045512.2 NC_045512.2 20912 3 stopgain ORF1ab 6882 0 . 24 24 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 24 1.0 1.0 0 24 0 24 . . 0 T NC_045512.2 NC_045512.2 20990 3 stopgain ORF1ab 6908 0 . 48 24 24 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 48 1.0 1.0 1.0 24 24 48 . . 0 T NC_045512.2 NC_045512.2 21140 3 stopgain ORF1ab 6958 0 . 41 17 24 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 41 1.0 1.0 1.0 17 24 41 . . 0 T NC_045512.2 NC_045512.2 21164 3 stopgain ORF1ab 6966 0 . 17 17 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 17 1.0 1.0 0 17 0 17 . . 0 T NC_045512.2 NC_045512.2 21170 3 stopgain ORF1ab 6968 0 . 17 17 0 0 0.0 0.0 0 0 0 0 0.0 0.0 0 0 0 17 1.0 1.0 0 17 0 17 . . 0 T NC_045512.2 NC_045512.2 21248 3 stopgain ORF1ab 6994 0 . 34 17 17 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 34 1.0 1.0 1.0 17 17 34 . . 0 T NC_045512.2 NC_045512.2 21275 3 stopgain ORF1ab 7003 0 . 34 17 17 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 34 1.0 1.0 1.0 17 17 34 . . 0 T NC_045512.2 NC_045512.2 21314 3 stopgain ORF1ab 7016 0 . 31 14 17 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 31 1.0 1.0 1.0 14 17 31 . . 0 T NC_045512.2 NC_045512.2 21398 3 stopgain ORF1ab 7044 0 . 21 4 17 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 21 1.0 1.0 1.0 4 17 21 . . 0 T NC_045512.2 NC_045512.2 21419 3 stopgain ORF1ab 7051 0 . 21 4 17 0 0.0 0.0 0.0 0 0 0 0.0 0.0 0.0 0 0 21 1.0 1.0 1.0 4 17 21 . . 0 T NC_045512.2