Mercurial > repos > iuc > snapatac2_preprocessing
comparison macros.xml @ 3:4ecdea4cbea1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snapatac2 commit b37248ea9b492c096b143272aebc79d8f04c2984
author | iuc |
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date | Wed, 17 Jul 2024 05:54:44 +0000 |
parents | 48d9421bf176 |
children | fef8f61cb34c |
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2:48d9421bf176 | 3:4ecdea4cbea1 |
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1 <macros> | 1 <macros> |
2 <token name="@TOOL_VERSION@">2.5.3</token> | 2 <token name="@TOOL_VERSION@">2.6.4</token> |
3 <token name="@VERSION_SUFFIX@">2</token> | 3 <token name="@VERSION_SUFFIX@">0</token> |
4 <token name="@PROFILE@">23.0</token> | 4 <token name="@PROFILE@">23.0</token> |
5 <xml name="requirements"> | 5 <xml name="requirements"> |
6 <requirement type="package" version="@TOOL_VERSION@">snapatac2</requirement> | 6 <requirement type="package" version="@TOOL_VERSION@">snapatac2</requirement> |
7 <requirement type="package" version="5.18.0">plotly</requirement> | 7 <requirement type="package" version="5.22.0">plotly</requirement> |
8 <requirement type="package" version="0.2.1">python-kaleido</requirement> | 8 <requirement type="package" version="0.2.1">python-kaleido</requirement> |
9 <requirement type="package" version="0.19.19">polars</requirement> | 9 <requirement type="package" version="1.1.0">polars</requirement> |
10 <requirement type="package" version="14.0.1">pyarrow</requirement> | 10 <requirement type="package" version="16.1.0">pyarrow</requirement> |
11 <requirement type="package" version="0.11.3">python-igraph</requirement> | 11 <requirement type="package" version="0.11.6">python-igraph</requirement> |
12 <requirement type="package" version="0.8.33">hdbscan</requirement> | 12 <requirement type="package" version="0.8.37">hdbscan</requirement> |
13 <requirement type="package" version="0.0.9">harmonypy</requirement> | 13 <requirement type="package" version="0.0.10">harmonypy</requirement> |
14 <requirement type="package" version="1.7.4">scanorama</requirement> | 14 <requirement type="package" version="1.7.4">scanorama</requirement> |
15 <requirement type="package" version="3.0.1">macs3</requirement> | 15 <requirement type="package" version="3.0.1">macs3</requirement> |
16 <requirement type="package" version="0.70.16">multiprocess</requirement> | 16 <requirement type="package" version="0.70.16">multiprocess</requirement> |
17 <requirement type="package" version="0.10.2">leidenalg</requirement> | 17 <requirement type="package" version="0.10.2">leidenalg</requirement> |
18 <yield /> | 18 <yield /> |
156 <xml name="render_plot_matching_text"> | 156 <xml name="render_plot_matching_text"> |
157 <has_text_matching expression="width = 650"/> | 157 <has_text_matching expression="width = 650"/> |
158 <has_text_matching expression="height = 450"/> | 158 <has_text_matching expression="height = 450"/> |
159 </xml> | 159 </xml> |
160 <xml name="param_counting_strategy"> | 160 <xml name="param_counting_strategy"> |
161 <param argument="counting_strategy" type="select" label="he strategy to compute feature counts"> | 161 <param argument="counting_strategy" type="select" label="The strategy to compute feature counts"> |
162 <option value="fragment">fragment</option> | 162 <option value="fragment">"fragment": based on the number of fragments that overlap with a region of interest</option> |
163 <option value="insertion" selected="true">insertion</option> | 163 <option value="insertion" selected="true">"insertion": based on the number of insertions that overlap with a region of interest</option> |
164 <option value="paired-insertion">paired-insertion</option> | 164 <option value="paired-insertion">"paired-insertion": similar to "insertion", but it only counts the insertions once if the pair of insertions of a fragment are both within the same region of interest</option> |
165 </param> | 165 </param> |
166 </xml> | 166 </xml> |
167 | 167 |
168 <token name="@CMD_params_data_integration@"><![CDATA[ | 168 <token name="@CMD_params_data_integration@"><![CDATA[ |
169 use_rep = '$method.use_rep', | 169 use_rep = '$method.use_rep', |