# HG changeset patch
# User iuc
# Date 1720177561 0
# Node ID 48d9421bf1763f5d442248652b0a995a24af8478
# Parent  cec3e76eaf05ea2555fe0855ab75a0b00165b100
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snapatac2 commit df9c285dddde7d901823c608c8d7dab971224b5b

diff -r cec3e76eaf05 -r 48d9421bf176 macros.xml
--- a/macros.xml	Thu May 23 15:20:02 2024 +0000
+++ b/macros.xml	Fri Jul 05 11:06:01 2024 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">2.5.3</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@VERSION_SUFFIX@">2</token>
     <token name="@PROFILE@">23.0</token>
     <xml name="requirements">
         <requirement type="package" version="@TOOL_VERSION@">snapatac2</requirement>
diff -r cec3e76eaf05 -r 48d9421bf176 preprocessing.xml
--- a/preprocessing.xml	Thu May 23 15:20:02 2024 +0000
+++ b/preprocessing.xml	Fri Jul 05 11:06:01 2024 +0000
@@ -91,7 +91,7 @@
 )
 
 #else if $method.method == 'pp.make_gene_matrix'
-sa.pp.make_gene_matrix(
+adata = sa.pp.make_gene_matrix(
     adata,
     gene_anno = '$method.gene_anno',
     chunk_size = $method.chunk_size,
@@ -464,7 +464,7 @@
                     <has_text_matching expression="count_frag_as_reads = True"/>
                 </assert_contents>
             </output>
-            <output name="anndata_out" location="https://zenodo.org/records/11260316/files/pp.make_gene_matrix.pbmc_500_chr21.h5ad" ftype="h5ad" compare="sim_size" delta_frac="0.1" />
+            <output name="anndata_out" location="https://zenodo.org/records/12548681/files/pp.make_gene_matrix.pbmc_500_chr21.h5ad" ftype="h5ad" compare="sim_size" delta_frac="0.1" />
         </test>
         <test expect_num_outputs="2">
             <!-- metrics.tsse -->