Mercurial > repos > iuc > snippy
diff test-data/wildtype.gbk @ 2:776ebd1239da draft
planemo upload commit dcedcb76831fd639d1468a308a78ac359ecd2496
| author | iuc |
|---|---|
| date | Mon, 18 Mar 2019 10:59:29 -0400 |
| parents | c9a8ef2aa380 |
| children |
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--- a/test-data/wildtype.gbk Sat Jan 26 14:36:48 2019 -0500 +++ b/test-data/wildtype.gbk Mon Mar 18 10:59:29 2019 -0400 @@ -1,4 +1,4 @@ -LOCUS Wildtype 197394 bp DNA linear 13-JUN-2016 +LOCUS Wildtype 197394 bp DNA linear 18-JAN-2019 DEFINITION Staphylococcus aureus strain WT. ACCESSION VERSION @@ -6,7 +6,7 @@ SOURCE Staphylococcus aureus ORGANISM Staphylococcus aureus Unclassified. -COMMENT Annotated using prokka 1.12-beta from +COMMENT Annotated using prokka 1.13.3 from https://github.com/tseemann/prokka. FEATURES Location/Qualifiers source 1..197394 @@ -33,12 +33,11 @@ CDS 1640..2773 /gene="dnaN" /locus_tag="WILD_00002" - /EC_number="2.7.7.7" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P99103" /codon_start=1 /transl_table=11 - /product="DNA polymerase III subunit beta" + /product="Beta sliding clamp" /translation="MMEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVI LTGSDSEISIEITIPKTVDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNEQ FQTLITSGHSEFNLSGLDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETR @@ -62,6 +61,7 @@ /codon_start=1 /transl_table=11 /product="DNA replication and repair protein RecF" + /db_xref="COG:COG1195" /translation="MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIY TLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQS RLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK @@ -124,6 +124,7 @@ /codon_start=1 /transl_table=11 /product="ADP-dependent (S)-NAD(P)H-hydrate dehydratase" + /db_xref="COG:COG0063" /translation="METLNSINIPKRKEDSHKGDYGKILLIGGSANLGGAIMLAARAC VFSGSGLITVATHPTNHSALHSRCPEAMVIDINDTKMLTKMIEMTDSILIGPGLGVDF KGNNAITFLLQNIQPHQNLIVDGDAITIFSKLKPQLPTCRVIFTPHLKEWERLSGIPI @@ -147,13 +148,9 @@ AFALDHLKLGVSELANVSERRLERLVNPQLNGDLPAFLSPEPGLQSGAMIMQYAAASL VSENKTLAHPASVDSITSSANQEDHVSMGTTAARHGYQIIENARRVLAIECVIALQAA ELKGVEGLSPKTRRKYDEFRSIVPSITYDRQFHKDIEAVAQYLKQSIYQTTACH" - misc_RNA 11968..12177 - /locus_tag="WILD_00009" - /product="T-box" - /inference="COORDINATES:profile:Infernal:1.1" CDS 12267..13553 /gene="serS" - /locus_tag="WILD_00010" + /locus_tag="WILD_00009" /EC_number="6.1.1.11" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P99178" @@ -169,42 +166,35 @@ YDLEVWLPSYNDYKEISSCSNCTDFQARRANIRFKRDKAAKPELAHTLNGSGLAVGRT FAAIVENYQNEDGTVTIPEALVPFMGGKTQISKPVK" CDS 14197..14892 - /gene="ygaZ" - /locus_tag="WILD_00011" + /locus_tag="WILD_00010" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:P76630" /codon_start=1 /transl_table=11 - /product="Inner membrane protein YgaZ" + /product="hypothetical protein" /translation="MTTHLSFRQGVQECIPTLLGYAGVGISFGIVASSQNFSILEIIL LCLVIYAGAAQFIMCALFIAGTPISAIVLTVFIVNSRMFLLSMSLAPNFKTYGFWNRV GLGSLVTDETFGVAITPYLKGEAINDRWMHGLNITAYLFWVIPCVAGALFGEYISNPQ ALGLDFAITAMFIFLAIAQFESITKSRLRIYIVLIIAVIVMMLSLSMFMPSYLAILIA ATISAALGVMMER" CDS 14889..15218 - /locus_tag="WILD_00012" + /locus_tag="WILD_00011" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:PFAM:PF05437.6" /codon_start=1 /transl_table=11 - /product="Branched-chain amino acid transport protein - (AzlD)" + /product="hypothetical protein" /translation="MITHMNMLILILLCGIVTLLIRIIPFIMISKVQLPDVVVRWLSF IPITLFTALVIDSIIQQTPHGEGYTLNIPYIIALIPTVILSIITRSLTITIISGIVIM AALRFFF" - misc_RNA 15423..15521 - /locus_tag="WILD_00013" - /product="SAM" - /inference="COORDINATES:profile:Infernal:1.1" CDS 15580..16548 - /gene="metX" - /locus_tag="WILD_00014" + /gene="metXA" + /locus_tag="WILD_00012" /EC_number="2.3.1.31" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:Q8F4I0" + /inference="similar to AA sequence:UniProtKB:K4ICC9" /codon_start=1 /transl_table=11 /product="Homoserine O-acetyltransferase" + /db_xref="COG:COG2021" /translation="MTNYTVDTLNLGEFITGSGEVIDNLRLRYEHVGYHGQPLVVVCH ALTGNHLTYGTDDYPGWWREIIDGGYVPIHDYQFLTFDVIGSPFGSSSPLNDPHFPKK LTLRDIVRANERGIQALGYDKINILIGGSLGGMQAMELLYNRQFEVDKAIILAATSRT @@ -212,7 +202,7 @@ KFKERFDLNCYLTLLDVLDSHNIDRGRTDVTHVFKNLETKVLTMGFIDDLLYPDDQVR ALGERFKYHRHFFVPDNVGHDGFLLNFSTWAPNLYHFLNLKHFKRK" CDS 16856..17779 - /locus_tag="WILD_00015" + /locus_tag="WILD_00013" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -225,13 +215,14 @@ ILTPTTHIVGLLGVIDLSLNLKRIMKNNSKK" CDS 17794..19761 /gene="gdpP" - /locus_tag="WILD_00016" + /locus_tag="WILD_00014" /EC_number="3.1.4.-" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P37484" /codon_start=1 /transl_table=11 /product="Cyclic-di-AMP phosphodiesterase GdpP" + /db_xref="COG:COG3887" /translation="MNRQSTKKALLIPFVIMIITAIVLMGVWFIFNSLIALIASIVLV VMIIVSIVLFRQALMKMDSYVDGLSAQISTTNNKAIKHLPIGIIVLDENDHIEWVNQF MTDHMEANVISESVNEVFPNILKQLDRVKSVEIEYNQYHFQVRYSENDHCLYFFDITE @@ -246,7 +237,7 @@ AATQLKGVTVEEAIAQLQQAITEQLSRSEDA" CDS 19758..20204 /gene="rplI" - /locus_tag="WILD_00017" + /locus_tag="WILD_00015" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P66318" /codon_start=1 @@ -257,13 +248,14 @@ KAQHDIKIDKRKMDLPNGIHSLGYTNVPVKLDKEVEGTIRVHTVEQ" CDS 20236..21636 /gene="dnaC" - /locus_tag="WILD_00018" + /locus_tag="WILD_00016" /EC_number="3.6.4.12" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P37469" /codon_start=1 /transl_table=11 /product="Replicative DNA helicase" + /db_xref="COG:COG0305" /translation="MDRMYEQNQMPHNNEAEQSVLGSIIIDPELINTTQEVLLPESFY RGAHQHIFRAMMHLNEDNKEIDVVTLMDQLSTEGTLNEAGGPQYLAELSTNVPTTRNV QYYTDIVSKHALKRRLIQTADSIANDGYNDELELDAILSDAERRILELSSSRESDGFK @@ -275,7 +267,7 @@ QYNKFTDIDYAHADMM" CDS 21915..23198 /gene="purA" - /locus_tag="WILD_00019" + /locus_tag="WILD_00017" /EC_number="6.3.4.4" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P99099" @@ -291,23 +283,24 @@ TGLDTVKICTAYELDGKEITEYPANLDQLKRCKPIFEELPGWTEDVTSVRTLEELPEN ARKYLERISELCNVQISIFSVGPDREQTNLLKELW" tRNA 23628..23702 - /locus_tag="WILD_00020" + /locus_tag="WILD_00018" /product="tRNA-Glu" /inference="COORDINATES:profile:Aragorn:1.2" /note="tRNA-Glu(ttc)" tRNA 23710..23782 - /locus_tag="WILD_00021" + /locus_tag="WILD_00019" /product="tRNA-Asp" /inference="COORDINATES:profile:Aragorn:1.2" /note="tRNA-Asp(gtc)" CDS 24388..25089 /gene="walR" - /locus_tag="WILD_00022" + /locus_tag="WILD_00020" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:Q9RDT5" + /inference="similar to AA sequence:UniProtKB:Q2G2U6" /codon_start=1 /transl_table=11 /product="Transcriptional regulatory protein WalR" + /db_xref="COG:COG0745" /translation="MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYE EEPDIVLLDIMLPGRDGMEVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTK PFSTRELIARVKANLRRHYSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTH @@ -315,10 +308,10 @@ IVTRRGVGYFLQQHE" CDS 25102..26928 /gene="walK" - /locus_tag="WILD_00023" + /locus_tag="WILD_00021" /EC_number="2.7.13.3" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:Q7A8E0" + /inference="similar to AA sequence:UniProtKB:Q2G2U4" /codon_start=1 /transl_table=11 /product="Sensor protein kinase WalK" @@ -334,12 +327,11 @@ DKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGL AISKEIVEAHNGRIWANSVEGQGTSIFITLPCEVIEDGDWDE" CDS 26921..28255 - /locus_tag="WILD_00024" + /locus_tag="WILD_00022" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:PFAM:PF07435.5" /codon_start=1 /transl_table=11 - /product="YycH protein" + /product="hypothetical protein" /translation="MNNKEHIKSVILALLVLMSVVLTYMVWNFSPDIANVDNTDSKKS ETKPLTTPMTAKMDTTITPFQIIHSKNDHPEGTIATVSNVNKLTKPLKNKEVKSVEHV RRDHNLMIPDLSSDFTLFDFTYDLPLSTYLGQVLNMNAKVPNHFNFNRLVIDHDADDN @@ -350,12 +342,14 @@ NFEKVTNIAIGYEMQDNPDHNHIEVQINSELVPRWYVEYDGEWYVYNDGRLE" CDS 28256..29044 /gene="yycI" - /locus_tag="WILD_00025" + /locus_tag="WILD_00023" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:Q45612" /codon_start=1 /transl_table=11 - /product="Two-component system YycFG regulatory protein" + /product="Two-component system WalR/WalK regulatory + protein YycI" + /db_xref="COG:COG4853" /translation="MNWKLTKTLFIFVFILVNIVLVSIYVNKVNRSHINEVESNNEVN FQQEEIKVPASILNKSVKGIQLEQITGRSKDFSSKAKGDSDLTTSDGGKLLNANISQS VKVSDNNLKDLKDYVNKRVFKGSEYQLSEISSGSVKYEQTYDNFPILNNSKAMLNFNI @@ -363,27 +357,25 @@ SVVNETNVQLLQPNWEIKVKHDGKDKTNTYYVEATNNSPKIINH" CDS 29441..30232 /gene="yycJ" - /locus_tag="WILD_00026" + /locus_tag="WILD_00024" /EC_number="3.-.-.-" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:C0SP91" /codon_start=1 /transl_table=11 /product="Putative metallo-hydrolase YycJ" + /db_xref="COG:COG1235" /translation="MIRMSVLASGSTGNATFVENEKGSLLVDVGLTGKKMEELFSQID RNIQDLNGILVTHEHIDHIKGLGVLARKYQLPIYANEKTWQAIEKKDSRIPMDQKFIF NPYETKSIAGFDVESFNVSHDAIDPQFYIFHNNYKKFTILTDTGYVSDRMKGMIRGSD AFIFESNHDVDMLRMCRYPWKTKQRILGDMGHVSNEDAGHAMTDVITGNTKRIYLSHL SQDNNMKDLARMSVGQVLNEHDIDTEKEVLLCDTDKAIPTPIYTI" CDS 30459..32777 - /gene="mggB" - /locus_tag="WILD_00027" - /EC_number="3.1.3.-" + /locus_tag="WILD_00025" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:A9BJC1" /codon_start=1 /transl_table=11 - /product="Mannosylglucosyl-3-phosphoglycerate phosphatase" + /product="hypothetical protein" /translation="MKALLLKTSVWLVLLFSAMGLWQVSSAAEQHTPMKAHAVTTIDK ATTDKQQVPPTKEAAHHYGEEAATNVSASAQGTADDTNNKVTSNAPSNKPSTAVSTTV NETRDVDTQQASTQKPTRTATFKLSNAKTASLSPRMFATNVPQTTTHKILHTNDIHGR @@ -400,18 +392,19 @@ KTGTDQSSSPAAMFVLVAGIGLIATVRRRKAS" CDS 33145..33624 /gene="rlmH" - /locus_tag="WILD_00028" + /locus_tag="WILD_00026" /EC_number="2.1.1.177" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P0C1V0" /codon_start=1 /transl_table=11 /product="Ribosomal RNA large subunit methyltransferase H" + /db_xref="COG:COG1576" /translation="MKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAP ENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSD FVFVIGGSNGLHKDVLQRSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYHK" CDS 33844..35094 - /locus_tag="WILD_00029" + /locus_tag="WILD_00027" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -425,19 +418,19 @@ FIEIKTSTSSSIEEPFFMSLNEMFAMKEYKQKYLILRIFNVSGKEPQFYFIDPYANYS KFKDVDDLIDKVFNVEGSVAKLNL" CDS 35124..35798 - /locus_tag="WILD_00030" + /locus_tag="WILD_00028" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:PFAM:PF00665.20" + /inference="similar to AA sequence:ISfinder:IS431mec" /codon_start=1 /transl_table=11 - /product="Integrase core domain protein" + /product="IS6 family transposase IS431mec" /translation="MNYFRYKQFNKDVITVAVGYYLRYTLSYRDISEILRERGVNVHH STVYRWVQEYAPILYQIWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDAEGHTLDI WLRKQRDNHSAYAFIKRLIKQFGKPQKVITDQAPSTKVAMAKVIKAFKLKPDCHCTSK YLNNLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEI SIMLAS" CDS complement(35830..36069) - /locus_tag="WILD_00031" + /locus_tag="WILD_00029" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -445,46 +438,42 @@ /translation="MSDNLSLFIDYINDNIIYGSEIKREKLENLFNQFAIKNVEKNIV YDELKSLDITIIESQDSYKNKLKRLFSVLLQSKKI" CDS complement(36584..37258) - /locus_tag="WILD_00032" + /locus_tag="WILD_00030" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:PFAM:PF00665.20" + /inference="similar to AA sequence:ISfinder:IS431mec" /codon_start=1 /transl_table=11 - /product="Integrase core domain protein" + /product="IS6 family transposase IS431mec" /translation="MNYFRYKQFNKDVITVAVGYYLRYTLSYRDISEILRERGVNVHH STVYRWVQEYAPILYQIWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDAEGHTLDI WLRKQRDNHSAYAFIKRLIKQFGKPQKVITDQAPSTKVAMAKVIKAFKLKPDCHCTSK YLNNLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEI SIMLAS" CDS complement(37349..37555) - /locus_tag="WILD_00033" + /locus_tag="WILD_00031" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:PFAM:PF01446.11" /codon_start=1 /transl_table=11 - /product="Replication protein" + /product="hypothetical protein" /translation="MSDLEEGLHRKRLISYGGLLKEIHKKLNLDDTEEGDLIHTDDDE KADEDGFSIIAMWNWERKNYFIKE" CDS complement(37559..38332) - /locus_tag="WILD_00034" + /locus_tag="WILD_00032" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:PFAM:PF01446.11" /codon_start=1 /transl_table=11 - /product="Replication protein" + /product="hypothetical protein" /translation="MCPNSSIYSDEKSRVLVDKTKSGKVRPWREKKIANVDYFELLHI LEFKKAERVKDCAEILEYKQNRETGERKLYRVWFCKSRLCPMCNWRRAMKHGIQSQKV VAEVIKQKPTVRWLFLTITVKNVYDGEELNKSLSDMAQGFRRMMQYKKINKNLVGFMR ATEVTINNKDNSYNQHMHVLVCVEPTYFKNTENYVNQKQWIQFWKKAMKLDYDPNVKV QMIRPKNKYKSDIQSAIDETAKYPVKDTDFMTDDEEKNL" CDS complement(38577..39839) - /gene="pre" - /locus_tag="WILD_00035" + /locus_tag="WILD_00033" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:P13925" /codon_start=1 /transl_table=11 - /product="Plasmid recombination enzyme" + /product="hypothetical protein" /translation="MSYAVCRMQKVKSAGLKGMQFHNQRERKSRTNDDIDHERTRENY DLKNDKNIDYNERVKEIIESQKTGTRKTRKDAVLVNELLVTSDRDFFEQLDPGEQKRF FEESYKLFSERYGKQNIAYATVHNDEQTPHMHLGVVPMRDGKLQGKNVFNRQELLWLQ @@ -495,9 +484,9 @@ LEPKKNEFELTHNREVKKERSRDQGMSL" CDS complement(40346..40750) /gene="ble" - /locus_tag="WILD_00036" + /locus_tag="WILD_00034" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:Q7DJ53" + /inference="similar to AA sequence:UniProtKB:Q7A8D1" /codon_start=1 /transl_table=11 /product="Bleomycin resistance protein" @@ -506,7 +495,7 @@ NTSLKDQWWDERDFAVIDPDNNLISFFQQIKS" CDS complement(40967..41710) /gene="knt" - /locus_tag="WILD_00037" + /locus_tag="WILD_00035" /EC_number="2.7.7.-" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P05057" @@ -519,19 +508,19 @@ VQVAMAGAMLIGLHHRICYTTSASVLTEAVKQSDLPSGYDHLCQFVMSGQLSDSEKLL ESLENFWNGIQEWTERHGYIVDVSKRIPF" CDS complement(41930..42604) - /locus_tag="WILD_00038" + /locus_tag="WILD_00036" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:PFAM:PF00665.20" + /inference="similar to AA sequence:ISfinder:IS431mec" /codon_start=1 /transl_table=11 - /product="Integrase core domain protein" + /product="IS6 family transposase IS431mec" /translation="MNYFRYKQFNKDVITVAVGYYLRYTLSYRDISEILRERGVNVHH STVYRWVQEYAPILYQIWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDAEGHTLDI WLRKQRDNHSAYAFIKRLIKQFGKPQKVITDQAPSTKVAMAKVIKAFKLKPDCHCTSK YLNNLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEI SIMLAS" CDS 42862..43029 - /locus_tag="WILD_00039" + /locus_tag="WILD_00037" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -540,38 +529,38 @@ EDHIRTYKIEK" CDS 43826..44569 /gene="ugpQ" - /locus_tag="WILD_00040" + /locus_tag="WILD_00038" /EC_number="3.1.4.46" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P10908" /codon_start=1 /transl_table=11 - /product="Glycerophosphoryl diester phosphodiesterase" + /product="Glycerophosphodiester phosphodiesterase, + cytoplasmic" + /db_xref="COG:COG0584" /translation="MLTVYGHRGLPSKAPENTIASFKAASEVEGINWLELDVAITKDE QLIIIHDDYLERTTNMSGEITELNYDEIKDASAGSWFGEKFKDEHLPTFDDVVKIANE YNMNLNVELKGITGPNGLALSKSMVKQVEEQLTNLNQNQEVLISSFNVVLVKLAEEIM PQYNRAVIFHTTSFREDWRTLLDYCNAKIVNTEDAKLTKAKVKMVKEAGYELNVWTVN KPARANQLANWGVDGIFTDNADKMVHLSQ" CDS 44666..45094 - /gene="paaZ" - /locus_tag="WILD_00041" + /locus_tag="WILD_00039" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:P77455" /codon_start=1 /transl_table=11 - /product="Bifunctional protein PaaZ" + /product="hypothetical protein" /translation="MKYDDFIVGETFKTKSLHITEEEIIQFATTFDPQYMHIDKEKAE QSRFKGIIASGMHTLSISFKLWVEEGKYGEEVVAGTQMNNVKFIKPVYPGNTLYVIAE ITNKKSIKKENGLVTVSLSTYNENEEIVFKGEVTALINNS" CDS complement(45140..47146) - /gene="pbp" - /locus_tag="WILD_00042" + /gene="mecA" + /locus_tag="WILD_00040" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:P07944" + /inference="similar to AA sequence:BARRGD:A7J11_00528" /codon_start=1 /transl_table=11 - /product="Beta-lactam-inducible penicillin-binding - protein" + /product="PBP2a family beta-lactam-resistant peptidoglycan + transpeptidase MecA" /translation="MKKIKIVPLILIVVVVGFGIYFYASKDKEINNTIDAIEDKNFKQ VYKDSSYISKSDNGEVEMTERPIKIYNSLGVKDINIQDRKIKKVSKNKKRVDAQYKIK TNYGNIDRNVQFNFVKEDGMWKLDWDHSVIIPGMQKDQSIHIENLKSERGKILDRNNV @@ -586,12 +575,12 @@ PNMMMAINVKDVQDKGMASYNAKISGKVYDELYENGNKKYDIDE" CDS 47246..49003 /gene="mecR1" - /locus_tag="WILD_00043" + /locus_tag="WILD_00041" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:P0A0B0" + /inference="similar to AA sequence:BARRGD:A7J11_03757" /codon_start=1 /transl_table=11 - /product="Methicillin resistance mecR1 protein" + /product="beta-lactam sensor/signal transducer MecR1" /translation="MLSSFLMLSIISSLLTICVIFLVRMLYIKYTQNIMSHKIWLLVL VSTLIPLIPFYKISNFTFSKDMMNRNVSDTTSSVSHMLDGQQSSVTKDLAINVNQFET SNITYMILLIWVFGSLLCLFYMIKAFRQIDVIKSSSLESSYLNERLKVCQSKMQFYKK @@ -605,7 +594,7 @@ NGEKAQQISERILKEMELI" CDS 49003..49374 /gene="mecI" - /locus_tag="WILD_00044" + /locus_tag="WILD_00042" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P68261" /codon_start=1 @@ -616,12 +605,13 @@ VEKEDLSQDEIEELRNILNKK" CDS 49882..50991 /gene="nagC" - /locus_tag="WILD_00045" + /locus_tag="WILD_00043" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P0AF20" /codon_start=1 /transl_table=11 /product="N-acetylglucosamine repressor" + /db_xref="COG:COG1940" /translation="MLREIYNHHNISRTQISKNLEINKATISSILNKLKYKSLVNEVG EGDSTKSGGRKPILLKVNHLYGYFISLDLTYSSVEVMYNYFDGNVIKHESYDLPDEKV SSILSIIKKHIDIQEKLDTYNGLLGVSVSIHGVVDNEQHVTYLPFHETEGISIAKKIK @@ -630,26 +620,25 @@ VVEEMEQFINKIAVLIHNLNTQFNPNAIYINCPLFNEMPEILEAIKNQFKQYSRNEIQ IKLTSNVKFATLLGGTLAIIQKVLQINDIYLDIKA" CDS complement(51105..51410) - /gene="pspE_1" - /locus_tag="WILD_00046" + /gene="glpE_1" + /locus_tag="WILD_00044" /EC_number="2.8.1.1" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:P23857" + /inference="protein motif:HAMAP:MF_01009" /codon_start=1 /transl_table=11 - /product="Thiosulfate sulfurtransferase PspE" + /product="Thiosulfate sulfurtransferase GlpE" /translation="MPQTNIVTSSIHSSEMTGEEHNVLDVRNDDEWRKGHLKQAIHIP HGKLLNEDIPFDKNDLIYVHCQSGVRSSIAVGILEYKGFTNIVNVRGGYQHLPAFLK" CDS complement(51501..52439) - /gene="pksB" - /locus_tag="WILD_00047" - /EC_number="3.-.-.-" + /gene="gloB" + /locus_tag="WILD_00045" + /EC_number="3.1.2.6" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:O34769" + /inference="protein motif:HAMAP:MF_01374" /codon_start=1 /transl_table=11 - /product="putative polyketide biosynthesis zinc-dependent - hydrolase PksB" + /product="Hydroxyacylglutathione hydrolase" /translation="MFFKQFYEDNFSQASYLIGCQRTGEAMIIDPIRDLTKYLKVADK EGFTITKAAETHIHADFASGIRDVANKLNASIYVSDEGKDEFNYKNMPKQTHFVKHQD IIYLGKIKLEVLHTPGHPPESISFLLTDEGGGSSIPMGLFSGDFIFVGDVGRPDLLEK @@ -657,14 +646,14 @@ NNWAFNVKDETSFIETLTLNQPAPPHHFSQMKKINQFGMQMYQPYNVYPSSSNTQTAF DLRSKEAFHGGHMHGTINIPFNKTFINQIGWYLDYD" CDS complement(52472..53536) - /gene="pspE_2" - /locus_tag="WILD_00048" + /gene="glpE_2" + /locus_tag="WILD_00046" /EC_number="2.8.1.1" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:P23857" + /inference="protein motif:HAMAP:MF_01009" /codon_start=1 /transl_table=11 - /product="Thiosulfate sulfurtransferase PspE" + /product="Thiosulfate sulfurtransferase GlpE" /translation="MEQYKEVHINSLNKEELEKLAKMGQLIDVRTKEEYELGHINGST LHPVEEIKSFNKNSNKTYYIHCKSGNRSTKACDYLAKQGYDVVNLKGGYKDYEAKNFN SAPLIEKDIEIKENRKQFDFRGLQCPGPIVNISKEINNISTGEQIEVTVTDPGFNSDI @@ -673,33 +662,29 @@ NMFGLGNIMMRYVMNKKNVDSLYSLIDQAIDQDIKLIACTMSMDVMGISKEELRDEVD YGGVGTYIGHTEQANHNLFI" CDS 53672..53932 - /gene="csoR" - /locus_tag="WILD_00049" + /locus_tag="WILD_00047" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:P9WP49" /codon_start=1 /transl_table=11 - /product="Copper-sensing transcriptional repressor CsoR" + /product="hypothetical protein" /translation="MTYDKKMINRINRIQGQLNGVVKMMEEEKDCKDIITQLSASKGS IQRLMGIIISENLIECVKTAEENNESSQELINEAVNLLVKSK" CDS 53947..54576 - /locus_tag="WILD_00050" + /locus_tag="WILD_00048" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:PFAM:PF01925.13" /codon_start=1 /transl_table=11 - /product="Sulfite exporter TauE/SafE" + /product="hypothetical protein" /translation="MTIMLLIGVLGGFISGLIGIGGAIIIYPAILILPPLIGIPAYSA YIASGLTSSQVFFSTLSGSLNARKQPAFSPKLVIYMGGGMLIGSMLGAILASLFNATF VNTVYVIIAILALILMFIKVKPTTQETKSKPLLFIIVGFGIGVISGIVGAGGAFIIIP VLLALFKLPMNTVVNNSIAIAFISSVGAFFIKLMQGYIPVESAIFLIIE" CDS complement(54844..55503) - /locus_tag="WILD_00051" + /locus_tag="WILD_00049" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:PFAM:PF03596.7" /codon_start=1 /transl_table=11 - /product="Cadmium resistance transporter" + /product="hypothetical protein" /translation="MKKSPIPKIFGDDKMIATILTATAVYVATGIDYLVILILLFSQV KKGQVKHIWIGQYIGTAIVIGASLLVAQGVVNLIPQQWVIGLLGLLPLYLGVKIWIKG EEDEDESSILSLFSSGKFNQLFLTMIFIVLASSADDFSIYIPYFTTLSMSEIFIVTIV @@ -707,13 +692,13 @@ L" CDS complement(55542..57956) /gene="cadA" - /locus_tag="WILD_00052" + /locus_tag="WILD_00050" /EC_number="3.6.3.3" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:Q60048" + /inference="similar to AA sequence:UniProtKB:P20021" /codon_start=1 /transl_table=11 - /product="putative cadmium-transporting ATPase" + /product="Cadmium-transporting ATPase" /translation="MDSSTKTLTEDKQVYRVEGFSCANCAGKFEKNVKELSGVHDAKV NFGASKIDVFGSATVEDLEKAGAFENLKVAPEKARRRVEPVVTEDKNVYRVEGFSCAN CAGKFEKNVKQLAGVQDAKVNFGASKIDVYGNTSVEELEKAGAFENLKVIPEKLANPS @@ -731,7 +716,7 @@ MRVKDK" CDS complement(57949..58314) /gene="cadC" - /locus_tag="WILD_00053" + /locus_tag="WILD_00051" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P20047" /codon_start=1 @@ -742,7 +727,7 @@ KIAYVLSLEGELCVCDVANIIESSTATASHHLRLLKNLGIAKYRKEGKLVYYSLDDEH VKQLVEKAFLHQREVASIG" CDS complement(58552..58929) - /locus_tag="WILD_00054" + /locus_tag="WILD_00052" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -751,13 +736,13 @@ IAKEANVSKSWLYKEHDIRQRIESLRERQITSNVVSKPKKSSRSEEILIKTLKRRVME LEKENKKLQNQIQKLYGDLYNKE" CDS complement(58936..60828) - /gene="xerD" - /locus_tag="WILD_00055" + /gene="xerC" + /locus_tag="WILD_00053" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:O31206" + /inference="protein motif:HAMAP:MF_01808" /codon_start=1 /transl_table=11 - /product="Tyrosine recombinase XerD" + /product="Tyrosine recombinase XerC" /translation="MNASSKRKIISQSEISKKIAVMNEEMQGFWANNSWDIRKCPHPS AIELSKNPALRNRWVRFERVKNLWLRTELKYFYFYHLNNGIWNAKTVWIRKGTVINKM LDFLDLKYPSITSITEVPIDKAMTEYRTYLTKQGVRITTTNYKITANQEKTPVKANSY @@ -771,9 +756,8 @@ PHANACLDCTHFCTSKQFLPQHEEQLERTEELLTIAKDKQWQRQIETNSRVKERLEQI IGSLTG" CDS complement(61023..61346) - /locus_tag="WILD_00056" + /locus_tag="WILD_00054" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:CDD:PRK00024" /codon_start=1 /transl_table=11 /product="hypothetical protein" @@ -781,7 +765,7 @@ REHFILICLNSKNEPTHIETVSIGTINFAVIHPREIFKTAILSNATGMIIGHNHPSGD ILTIV" CDS complement(61339..61545) - /locus_tag="WILD_00057" + /locus_tag="WILD_00055" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -789,7 +773,7 @@ /translation="MNQTWKEVYQYLMHQPHIDVIKGIIAFSSNKKNNSELDELYSIY MNDDSITSIVHPDLIESIELIHNE" CDS complement(61547..62068) - /locus_tag="WILD_00058" + /locus_tag="WILD_00056" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -799,7 +783,7 @@ AVKEADSVLLAWGSYGKKPLVENRVNEVLDMLKPHSKKISILTNPQTNEIMHPLNPYA RKAWTIKPLKETK" CDS complement(62087..62398) - /locus_tag="WILD_00059" + /locus_tag="WILD_00057" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -808,14 +792,14 @@ FQFNMHNSQLYIKHKQERPEYVKIHKANYSKAININKVYIIREDDVDLSYYVMLLPEE Y" CDS complement(62401..62490) - /locus_tag="WILD_00060" + /locus_tag="WILD_00058" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 /product="hypothetical protein" /translation="MNKWIHIAQISVTVITEVITIMKDIEKEK" CDS complement(62483..62833) - /locus_tag="WILD_00061" + /locus_tag="WILD_00059" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -824,13 +808,11 @@ PLTNKILHTYTYYSDTLHERHIYPFILYYQKQLIAIGYIDETNDMDFLYLHNTVMPLL DQRHLLEKENYNNE" CDS complement(63304..64932) - /gene="hin" - /locus_tag="WILD_00062" + /locus_tag="WILD_00060" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:P03013" /codon_start=1 /transl_table=11 - /product="DNA-invertase hin" + /product="hypothetical protein" /translation="MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFV VVDVYADRGISGKSMNRPELQRLLKDANEGQIDSVMVYKTNRLARNTSDLLKIVEDLH RQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN @@ -842,13 +824,11 @@ EKLSYDTKQIAALLQRIFQNIESMDKAQLKALYLTVIDRIDIRKDGNHKKQFYVTLKL NNEIIKQLFNNTPLDEVLLSTSSLFLPQTLFLQI" CDS complement(64953..66299) - /gene="tnpR" - /locus_tag="WILD_00063" + /locus_tag="WILD_00061" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:P03012" /codon_start=1 /transl_table=11 - /product="Transposon gamma-delta resolvase" + /product="hypothetical protein" /translation="MKRAIGYLRQSTTKQQSLPAQKQAIELLAPKHNIQNIQYISDKQ SGRTDNRTGYQQVTERIQQRQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVH DGYFDMDKAFDRLKLNIFMSLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYQ @@ -858,7 +838,7 @@ NAIHQRLKKQRVIEAKSTLTQEQLIDKLAKGMIDAESFRKQTHLMNQKHKTISSISDN QLQTSLQKVIQKSFTLNMLHPYIDEIRITKNKALVGIYFKNEPLNIVNQTSQSSIA" CDS complement(66492..66767) - /locus_tag="WILD_00064" + /locus_tag="WILD_00062" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -866,7 +846,7 @@ /translation="MNTVALAHEIEDERFEYLESTPLDTVKECCKQEGRQISNTYTEE YKLINDILEKVIKPTSIVAYGEYEDYIHLKKFAQRRISNSLLLLRCN" CDS complement(66857..68644) - /locus_tag="WILD_00065" + /locus_tag="WILD_00063" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -883,7 +863,7 @@ ALRDKDYIQSDANRKTTKRSVKDKEGKPKTIVFYHLKLDKSYAPIFGLSEKSKFNIPL SFISEHQHPILRDMISKAREWDKNGDIDF" CDS complement(68644..68931) - /locus_tag="WILD_00066" + /locus_tag="WILD_00064" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -891,7 +871,7 @@ /translation="MMKEKEFYTLKRAVTSIAFNLPVGTMFMYHDLNVRANVLCSTEI QQDVGRWFAHFVKYTPNLPFIVVGKKGSSLLYLKTAPNPMNHQNNWKGGNN" CDS 69065..70096 - /locus_tag="WILD_00067" + /locus_tag="WILD_00065" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -904,25 +884,21 @@ SIKKYRYVKEQIERFGNALKEELSIATLSIEQNMLEAKIDYYKNYYYPRKKQSITILS TTYQCFLKL" CDS 70166..70738 - /locus_tag="WILD_00068" + /locus_tag="WILD_00066" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:PFAM:PF03496.8" /codon_start=1 /transl_table=11 - /product="ADP-ribosyltransferase exoenzyme" + /product="hypothetical protein" /translation="MFRLKKWYLKQKGYFCRVGEKWDNSNLSHENIHSYVDRVLEYET ETRRNGQPTEEYILASSGEKINEDLRSGTNDHKEILEVFDKYKVKEDITTYRTVSPRI YKLMEKNAKNLNGVDLFELGILHTSLIKGYESREEGYKLRVKVKKGTPAFYVGNLTGE ESHYYEVIVVNNLKLKIISIEDYYINCEVV" CDS 71093..72793 - /gene="mcrB" - /locus_tag="WILD_00069" - /EC_number="3.1.21.-" + /locus_tag="WILD_00067" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:P15005" /codon_start=1 /transl_table=11 - /product="5-methylcytosine-specific restriction enzyme B" + /product="hypothetical protein" /translation="MKCIDKTWVSYYKELADKLTDYQNKRYELIEIVKEVYKKTGIKF PTLASDNVLMDIDPFTIFALFNKNSMRETNKVKILTELASELNIKSKIPSVFDSIPTV NNLNATYYNFKDYGKDNDIETLWTLFTAALNFANYPSEDNKLKFIHSFDKNITKTGNG @@ -935,13 +911,14 @@ NGFVIGHSYFSNIECIDKDELSNIIEFEIIPMLEEYWFDEPSKINVWSEKLRNSINND " CDS 72786..73826 - /locus_tag="WILD_00070" + /gene="mcrC" + /locus_tag="WILD_00068" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:CDD:PRK09736" + /inference="similar to AA sequence:UniProtKB:P15006" /codon_start=1 /transl_table=11 - /product="5-methylcytosine-specific restriction enzyme - subunit McrC" + /product="Protein McrC" + /db_xref="COG:COG4268" /translation="MINIKNIYYMLSYAFTVLNKKGYQKLATEQFENIFDLYSAILIK GISSQLNSGLHHEYIEQTDSLKVIRGKVDVKNSIQGLGVLSQRINCIYDEFSLNTYMN KILKTTMKCLIKTDISRKNKIKLRKLLVHFNNVDTLDYRNIQWYHSFDRNNQTYKMLI @@ -950,7 +927,7 @@ VKNQQLNLKKKAIQVSGMLLYAKTDENIVLNDKFHMSGSQIIIKTLDLNCNFTIIKKQ LNGIVNDIFLLK" CDS 74257..74415 - /locus_tag="WILD_00071" + /locus_tag="WILD_00069" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -958,12 +935,11 @@ /translation="MITIDSKINKQIAKNLSLEGMYVTREQQIQILHAINNEKEITNE LIRKIAFK" CDS complement(75254..76225) - /locus_tag="WILD_00072" + /locus_tag="WILD_00070" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:PFAM:PF04909.8" /codon_start=1 /transl_table=11 - /product="Amidohydrolase" + /product="hypothetical protein" /translation="MTETKAIDTHAHLWNEDYLDKLGKLGSQGTEVAKGINQSASKED LEKRFKMMDDAGVDLQIISATPQSPQWGTKEEAHQSAQEINDLYERLVQQYPDRFLAY GAVSLPYVDQAIEEAQALLKKDEFVGIAIPTIVKDKVSVADKQFEPFFAAMNELNATI @@ -971,7 +947,7 @@ LPFFMTRIKDNYEDWNAFNIDPYEVLNRQFWYDTANFHEPSLINSIETFGKDKFMMGS DFPYFQDEKYTRGVDYIKNSNIDPDTINGILRGNAIEFYQIEENHNH" CDS complement(76278..76649) - /locus_tag="WILD_00073" + /locus_tag="WILD_00071" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -981,7 +957,7 @@ SKFFFLNVLSLLEVLSLTRNK" CDS complement(76669..78060) /gene="emrY" - /locus_tag="WILD_00074" + /locus_tag="WILD_00072" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P52600" /codon_start=1 @@ -997,7 +973,7 @@ YIAHGTAMNNTIRQVSAAIGTGILVTLMTGLGKTSSLSGSQGLIHGLDITFYVVALIA FIGTIIAFFIRKH" CDS 78174..78377 - /locus_tag="WILD_00075" + /locus_tag="WILD_00073" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -1005,39 +981,36 @@ /translation="MKNAIMKEVVYINFEGLEQYLNGDNTRYNTLSLETLNYYLKQYV LTVPFKNMDVQNGMKVSAEVKDI" CDS 78387..78752 - /locus_tag="WILD_00076" + /locus_tag="WILD_00074" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:PFAM:PF00797.1" /codon_start=1 /transl_table=11 - /product="N-acetyltransferase" + /product="hypothetical protein" /translation="MNHQHGDFYYEMNNFFNVYFEYKGFTVNIVSSTIHTHGDGKSLK GSHVSLIIPIDGVDYVTGADFGDLPFSVMPIVPKDNSPVIHDMNGDFHAIYVNDYLFY VRKMGKDNDNNLDHTMKWN" CDS 79027..79602 - /locus_tag="WILD_00077" + /locus_tag="WILD_00075" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:CDD:PRK09480" /codon_start=1 /transl_table=11 - /product="division inhibitor protein" + /product="hypothetical protein" /translation="MEKNQRKKRSDAEYNQQIILTTMEDLLEQGEDISTKKMSDIAKI SGVGVGTLYRHFESKTLLCQAIMDKKVDQMFIEIEDILAENTQWPVRDKINVILTKYL DLKEANFTTLNFIEKSSSHSSSVINIPFFERLKNLLIQQFENVHSIADLDFKLNLMLN AFSSDFYYFVKHNQKLTKQQFLDKLLDLYLR" CDS 80072..80545 - /locus_tag="WILD_00078" + /locus_tag="WILD_00076" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:PFAM:PF00583.18" /codon_start=1 /transl_table=11 - /product="Acetyltransferase (GNAT) family protein" + /product="hypothetical protein" /translation="MEYKSYNKMSNNILSILLSEKNFDNKMVVSTGSYILSELPCIVA YKNNDIVGLLTYKVYDEYIEIISLDSFVENKGIGSHLLNYAEIIASDMSKRSISVITT NENIKALYFYQKNKYRITDVIFDAVTEARKIKPSIPEMGENGIEIRDEIVLKKCL" CDS complement(80652..81638) /gene="dus" - /locus_tag="WILD_00079" + /locus_tag="WILD_00077" /EC_number="1.3.1.-" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P67717" @@ -1051,17 +1024,15 @@ ELAEKYGIDGVMIGRGIFHNPFAFEKEPREHTCKELLDLLRLHLSLFNKYEKDEIRQF KSLRRFFKIYVRGIRGASELRHQLMNTQSIAEARALLDEFEAQMDEDVKLEL" CDS 82198..82494 - /locus_tag="WILD_00080" + /locus_tag="WILD_00078" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:PFAM:PF04993.7" - /note="TfoX N-terminal domain" /codon_start=1 /transl_table=11 /product="hypothetical protein" /translation="MATEKDVNDLFLNHVNSNAVKTRKMMGEYIVYYDGVVIGGLYDN RLLVKATKSARHQFQDNALVSPYPGAKEMILIPDFAEATNITNLFECIKNDLKN" CDS 82702..83304 - /locus_tag="WILD_00081" + /locus_tag="WILD_00079" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -1071,14 +1042,11 @@ LPLYKQKKKKQTFKKYMAYTTIGLSIYLGLSLVLVHTTKIYMDEGGVRYYYGSFVMKQ AGGYAYLALAVLSTLLIVAKKATNKNKKIETVDNTNITER" CDS 83572..86724 - /gene="recD" - /locus_tag="WILD_00082" - /EC_number="3.1.11.5" + /locus_tag="WILD_00080" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:HAMAP:MF_01487" /codon_start=1 /transl_table=11 - /product="RecBCD enzyme subunit RecD" + /product="hypothetical protein" /translation="MSQLLNDTLSAWLLIESLSPGEVNFTAEDILSAENFKNGAKQAQ LQSFDEYFEIWNDERFIISEEKSEIGEIIFKFYRHCFRYNEINLKIQDIFDDYSDIHN PNGTHCYGYTFNIDKHGQVIVDSIHIPMIMSALKEIEKNKNANIEEKFNDSVEKFVQK @@ -1099,7 +1067,7 @@ DKSIGTVHTFQGKEAQKVYFVIGTDNTQDGAVNWSCEKPNLLNVAVTRAKKEFYVIGD MQRIQSKPFYETIFKERNVK" CDS 86807..87289 - /locus_tag="WILD_00083" + /locus_tag="WILD_00081" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -1110,7 +1078,7 @@ " CDS 87494..88480 /gene="plc" - /locus_tag="WILD_00084" + /locus_tag="WILD_00082" /EC_number="4.6.1.13" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:Q2G1Q2" @@ -1124,7 +1092,7 @@ TKINNGSLNLQVQDEYKDYYDKKVEAVKNLLAKAKTDSNKDNVYVNFLSVASGGSAFN STYNYASHINPEIAKTIKANGKARTGWLIVDYAGYPWPGYDDIVSEIIDSNK" CDS 88704..89471 - /locus_tag="WILD_00085" + /locus_tag="WILD_00083" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:Q2G1Q0" /codon_start=1 @@ -1136,13 +1104,13 @@ FKDLSKYKDGDISYNPEVPSYSAKYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGN LKGSSVGYKDIEFTFVEKKGENIYFSDSLHLEPSEDK" CDS 89565..91802 - /gene="btr" - /locus_tag="WILD_00086" + /gene="rhaS" + /locus_tag="WILD_00084" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:P40408" + /inference="protein motif:HAMAP:MF_01534" /codon_start=1 /transl_table=11 - /product="HTH-type transcriptional activator Btr" + /product="HTH-type transcriptional activator RhaS" /translation="MQRDYLIRVETESMLDFKRLNGLMIGFVIKGEAHIYDENNMTQC NSGDIFIINHRDLYRFQLQQDGIICYIQFQMKYLADKFDDVHCLYFHLTDATTTKNIH QLRNIMARLVSTHIRHNELSKLTEQQLVIQLLMHMIHYVPRTYHSNQSILNDDKVNQV @@ -1159,13 +1127,14 @@ RYPSS" CDS 91953..93131 /gene="yxeP" - /locus_tag="WILD_00087" + /locus_tag="WILD_00085" /EC_number="3.-.-.-" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P54955" /codon_start=1 /transl_table=11 /product="putative hydrolase YxeP" + /db_xref="COG:COG1473" /translation="MNQQLIEALKSKEDKMIEIRRYLHQHPELSFHEDETAKYIAEFY KGKDVEVETNVGPRGIKVTIDSGKPGKTLAIRADFDALPITEDTGLSFASQNKGVMHA CGHDAHTAYMLVLAETLAEMKDSFTGKVVVIHQPAEEVPPGGAKAMIENGVLDGVDHV @@ -1175,13 +1144,14 @@ FAYYAKERPSAFIYTGAAVEDGEIYPHHHPKFKISEKSLLISAEAVGTVVLDYLKGDN " CDS 93133..94521 - /gene="norB_1" - /locus_tag="WILD_00088" + /gene="norB" + /locus_tag="WILD_00086" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:A6QGY6" + /inference="similar to AA sequence:UniProtKB:Q2FYJ5" /codon_start=1 /transl_table=11 /product="Quinolone resistance protein NorB" + /db_xref="COG:COG0477" /translation="MNETYRGGNKLILGIVLGVITFWLFAQSLVNVVPNLQQSFGADM GTISIAVSLTALFSGMFVVGAGGLADKIGRVKMTNIGLLLSIIGSALIIITNLPALLI LGRIIQGVSAACIMPSTLAIMKTYYEGAERQRALSYWSIGSWGGSGICSLFGGAVATT @@ -1192,12 +1162,11 @@ ASGIYKMASSLGGAFGVAISGAVYAGAVAATSIHTGAMIALWVNVLMGIMAFIAILFA IPNDDKRVKDAK" CDS complement(95007..96674) - /locus_tag="WILD_00089" + /locus_tag="WILD_00087" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:PFAM:PF02690.9" /codon_start=1 /transl_table=11 - /product="Na+/Pi-cotransporter" + /product="hypothetical protein" /translation="MEMSVTEVIFSFLGGLGIFLYGLKIMGDGLQASAGDRLRDILNK FTSNPVLGVIAGIVVTILIQSSSGTTVITIGLVTAGFMTLKQAIGVIMGANIGTTVTA FIIGIDLGEYAMPILALGAFLIFFFKRSKINNIGRILFGFGSLFFGLEFMGDAVKPLA @@ -1209,13 +1178,14 @@ GMDKLFNHVAESFDKAIDMLDVYDKTKKDEIVERSRESFNIEHKLRKGHIKRLNRGEC TTKGGLLYIDMIGVLERIGYHSRNVSEALVGLNDDVPTDEEIATTEI" CDS complement(96993..98768) - /locus_tag="WILD_00090" + /locus_tag="WILD_00088" /EC_number="4.2.1.53" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:B9E972" /codon_start=1 /transl_table=11 /product="Oleate hydratase" + /db_xref="COG:COG4716" /translation="MYYSYGNYEAFARPKKPENVENKSAYLIGSGLASLAAACFLIRD GQMEGSKIHILEELPKAGGSLDGENMPLKGYVVRGGREMENHFECLWDLFRSIPSLEI DHASVLDEFYWLNKEDPNYSRCRVIEKQGQRLVTDGDFTLTKTAIKEILDLCLTNEED @@ -1228,7 +1198,7 @@ EYSVRTAMEAVYQLLNIDRGIPEVINSTFDLRVLMDAVYELNDHQDLREITKDSKMQK LALAGFLKKIKGTYIESLLKEHKLL" CDS 99119..99592 - /locus_tag="WILD_00091" + /locus_tag="WILD_00089" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -1238,12 +1208,13 @@ IMSYMSIFTVLEIWQIQHHHQFNLLWFNMIFIIIIGLTLVIFCLLPTIHKMRDSQ" CDS 99854..101446 /gene="lctP" - /locus_tag="WILD_00092" + /locus_tag="WILD_00090" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P55910" /codon_start=1 /transl_table=11 /product="L-lactate permease" + /db_xref="COG:COG1620" /translation="MTLLTVNPFDNVGLSALVAAVPIILFLLCLTVFKMKGIYAALTT LVVTLIVALFVFELPARVSAGAITEGVVAGIFPIGYIVLMAVWLYKVSIKTGQFSIIQ DSIASISEDQRIQLLLIGFCFNAFLEGAAGFGVPIAICAVLLIQLGFEPLKAAMLCLI @@ -1256,9 +1227,9 @@ LKYSIIFVAFICVWTFILTLIF" CDS complement(101775..103055) /gene="spa" - /locus_tag="WILD_00093" + /locus_tag="WILD_00091" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:P99134" + /inference="similar to AA sequence:UniProtKB:P0A015" /codon_start=1 /transl_table=11 /product="Immunoglobulin G-binding protein A" @@ -1272,9 +1243,9 @@ PETGEENPFIGTTVFGGLSLALGAALLAGRRREL" CDS complement(103475..104227) /gene="sarS" - /locus_tag="WILD_00094" + /locus_tag="WILD_00092" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:Q7A872" + /inference="similar to AA sequence:UniProtKB:P0C0R2" /codon_start=1 /transl_table=11 /product="HTH-type transcriptional regulator SarS" @@ -1285,13 +1256,14 @@ HMNDAQQDHAEQLLAQVNQLLADKNHLHLVFE" CDS complement(104596..105594) /gene="yfhA" - /locus_tag="WILD_00095" + /locus_tag="WILD_00093" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:O31569" /codon_start=1 /transl_table=11 /product="putative siderophore transport system permease protein YfhA" + /db_xref="COG:COG0609" /translation="MTEKINKKDNYHLIFALIFLAIVSVVSMMVGSSFIPLQRVLMYF INPNDSIDQFTLEVLRLPRITLAILAGAALGMSGLMLQNVLKNPIASPDIIGITGGAS LSAVVFIAFFSHLTIHLLPLFAVLGGAIAMVILLVFQTKGHIRPTTLIIIGISMQTLF @@ -1300,13 +1272,14 @@ YAKKLLMSAMIGAISIVIADLIGRTLFLPKEVPAGVFIAAFGAPFFIYLLLTVKKL" CDS complement(105591..106586) /gene="yfiZ" - /locus_tag="WILD_00096" + /locus_tag="WILD_00094" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:O31568" /codon_start=1 /transl_table=11 /product="putative siderophore transport system permease protein YfiZ" + /db_xref="COG:COG0609" /translation="MLLKPKYQIVIAGLCLAIVAILSLMIGNTLVSPGTVIQALFNFD SENDLHDVVTGARASRTIIALLTGAALAVSGLLMQALTRNPIASPGLFGVNAGAVFFV IFSITFIQIQSFKMIVVIAFLGAIVVTVLVVALGMFRQTLFSPHRVILAGAAIAMLFT @@ -1315,12 +1288,13 @@ YLIPFTALTGAILMIISDIVARIIIKPLELPIGVVTAVIGAIVLIYLMKKGRQRL" CDS complement(106602..107594) /gene="yfiY" - /locus_tag="WILD_00097" + /locus_tag="WILD_00095" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:O31567" /codon_start=1 /transl_table=11 /product="putative siderophore-binding lipoprotein YfiY" + /db_xref="COG:COG0614" /translation="MNKVIKMLVVTLAFLLVLAGCSGNSNKQSSDSKDKETTSIKHAM GTTEIKGKPKRVVTLYQGATDVAVSLGVKPVGAVESWTQKPKFEYIKNDLKDTKIVGQ EPAPNLEEISKLKPDLIVASKVRNEKVYDQLSKIAPTVSTDTVFKFKDTTKLMGKALG @@ -1329,12 +1303,13 @@ WTSSKEWKNLDAVKNNQVSDDLDEITWNLAGGYKSSLKLIDDLYEKLNIEKQSK" CDS 107825..108805 /gene="sbnA" - /locus_tag="WILD_00098" + /locus_tag="WILD_00096" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:A6QDA0" + /inference="similar to AA sequence:UniProtKB:Q2G1N3" /codon_start=1 /transl_table=11 /product="putative siderophore biosynthesis protein SbnA" + /db_xref="COG:COG0031" /translation="MIEKSQACHDSLLDSVGQTPMVQLHQLFPKHEVFAKLEYMNPGG SMKDRPAKYIIEHGIKHGLITENTHLIESTSGNLGIALAMIAKIKGLKLTCVVDPKIS PTNLKIIKSYGANVEMVEEPDEHGGYLMTRIAKVQELLATIDDAYWINQYANELNWQS @@ -1343,7 +1318,7 @@ IAAIEQLITSIEEGATIVTILPDRGDRYLDLVYSDTWLEKMKSRQGVKSE" CDS 108802..109812 /gene="arcB" - /locus_tag="WILD_00099" + /locus_tag="WILD_00097" /EC_number="1.5.1.49" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:Q6HMS8" @@ -1358,14 +1333,11 @@ KEALHAELGQLVTGDTPGREDDDEIILLNPMGMAIEDISSAYFIYQQAQQQNIGTTLN LY" CDS 109833..111587 - /gene="iucC_1" - /locus_tag="WILD_00100" - /EC_number="6.3.2.39" + /locus_tag="WILD_00098" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:Q47318" /codon_start=1 /transl_table=11 - /product="Aerobactin synthase" + /product="hypothetical protein" /translation="MQNHTAVNTAQTIILRDLVDALLFEDIAGIVSNSEITKENGQTI LIYKRETQQIKIPVYFSALNMFRYESSQPITIEGRASKQPLTAAEFWQTIANMNCDLS HEWEVARVEEGLTTAATQLAKQLSELDLASHPFVMSEQFASLKDRPFHPLAKEKRGLR @@ -1378,13 +1350,13 @@ VSEHELMSLLKQILKNEVATISWVTTDQLAVRHILFDKQTWPFKQILLPLLYQRDSGG GSMPSGLTTVPNPMVTYD" CDS 111580..112836 - /gene="tetA" - /locus_tag="WILD_00101" + /gene="mdtG" + /locus_tag="WILD_00099" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:P02980" + /inference="protein motif:HAMAP:MF_01528" /codon_start=1 /transl_table=11 - /product="Tetracycline resistance protein, class B" + /product="Multidrug resistance protein MdtG" /translation="MINQSIWRSNFRILWLSQFIAIAGLTVLVPLLPIYMASLQNLSV VEIQLWSGIAIAAPAVTTMIASPIWGKLGDKISRKWMVLRALLGLAVCLFLMALCTTP LQFVLVRLLQGLFGGVVDASSAFASAEAPAEDRGKVLGRLQSSVSAGSLVGPLIGGVT @@ -1395,7 +1367,7 @@ ICSTITNQINDHTLMKLWELKQKSAK" CDS 112826..114562 /gene="iucA" - /locus_tag="WILD_00102" + /locus_tag="WILD_00100" /EC_number="6.3.2.38" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:Q76BS7" @@ -1403,6 +1375,7 @@ /transl_table=11 /product="N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase" + /db_xref="COG:COG4264" /translation="MQNKELIQHAAYAAIERILNEYFREENLYQVPPQNHQWSIQLSE LETLTGQFAYWSAMGHHMYHPEVWLIDGKSKKLTTYKEAIARILQHMAQSADNQTAVQ QHMAQIMSDIDNSIHRTARYLQSNTIDYAEDRYIVSEQSLYLGHPFHPTPKSASGFSE @@ -1415,14 +1388,15 @@ AHRLMTWKKEYANNAVFIDCVEDLYQTPTIAAKANLMSKLNDCGANPIYTHIPNPICH NKEVSYCESNNS" CDS 114543..116321 - /gene="iucC_2" - /locus_tag="WILD_00103" + /gene="iucC" + /locus_tag="WILD_00101" /EC_number="6.3.2.39" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:Q47318" /codon_start=1 /transl_table=11 /product="Aerobactin synthase" + /db_xref="COG:COG4264" /translation="MNQTILNRVKTRVMYQLVSSLIYENIVVYKASYQDGVGYFTIEG NDSEYRFTAEKTHSFDRIRITSPIERVVGDEADTTTDYTQLLREVVFTFPKNDEKLEQ FIVELLQTELKDTQSMQYRESNPPATPETFNDYEFYAMEGHQYHPSYKSRLGFTLSDN @@ -1436,13 +1410,14 @@ SELRIHHVTNPLGVGGITDATTISET" CDS 116296..117072 /gene="garL" - /locus_tag="WILD_00104" + /locus_tag="WILD_00102" /EC_number="4.1.2.20" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P23522" /codon_start=1 /transl_table=11 /product="5-keto-4-deoxy-D-glucarate aldolase" + /db_xref="COG:COG3836" /translation="MQQLSLKHRLNNGDSVYGIFNSIPDPLMIEVIAASGYDFVVIDT EHVAINDETLAHLIRAAEAAHIIPIVRVTAVIDRDIIKVLDMGARGIIVPHVKDRETV EHIVKLSRYYPQGLRSLNGGRMARFGRTPLLDAMEMANEHIMVIAMIEDVEGVMAIDD @@ -1450,7 +1425,7 @@ DIAKWQAQGVQTFILGDDRGKIYRHLSASLATSKQKGDED" CDS 117072..118274 /gene="btrK" - /locus_tag="WILD_00105" + /locus_tag="WILD_00103" /EC_number="4.1.1.95" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:Q2L4H3" @@ -1467,19 +1442,18 @@ QDTTLVGQLCTPKDVFAREIQIEAISTGDVIVFKYAGAYGWSISHHDFLSHPHPEFIY LTQTKEDE" CDS 118278..119042 - /locus_tag="WILD_00106" + /locus_tag="WILD_00104" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:PFAM:PF02195.12" /codon_start=1 /transl_table=11 - /product="ParB-like nuclease domain protein" + /product="hypothetical protein" /translation="MNHIHEHLKLVPVDKIDLHETFEPLRLEKTKSSIEADDFIRHPI LVTAMQHGRYMVIDGVHRYTSLKALGCKKVPVQEIHETQYSISTWQHKVPFGVWWETL QQEHRLPWTTETRQEAPFITMCHGDTEQYLYTKDLGEAHFQVWEKVVASYSGCCSVER IAQGTYPCLSQQDVLMKYQPLSYKEIEAVVHKGETVPAGVTRFNISGRCLNLQVPLAL LKQDDDVEQLRNWKQFLADKFANMRCYTEKVYLVEQ" CDS 119238..119864 - /locus_tag="WILD_00107" + /locus_tag="WILD_00105" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -1490,7 +1464,7 @@ EHPEFKNPTTKNLEGLNEEVHKDEATTKVDSDNTEPPIESKDHVSKKD" CDS 120075..120851 /gene="butA" - /locus_tag="WILD_00108" + /locus_tag="WILD_00106" /EC_number="1.1.1.304" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P99120" @@ -1504,7 +1478,7 @@ ALGRVSQPEDVSNVVSFLAGKDSDYITGQTIIVDGGMRFR" CDS 121195..122166 /gene="wbgU" - /locus_tag="WILD_00109" + /locus_tag="WILD_00107" /EC_number="5.1.3.7" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:Q7BJX9" @@ -1518,15 +1492,11 @@ YDVVQSVRLIMEHKDAVGHGYNIGTGTFTNLLEVYRIIGELYGKSVEHDFKEARKGDI KHSYADISNLKALGFVPKYTVETGLKDYFNFEVDNIEEVTAKEVEMS" CDS 122129..122818 - /gene="tuaA" - /locus_tag="WILD_00110" - /EC_number="2.7.8.40" + /locus_tag="WILD_00108" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:O32274" /codon_start=1 /transl_table=11 - /product="Putative undecaprenyl-phosphate - N-acetylgalactosaminyl 1-phosphate transferase" + /product="hypothetical protein" /translation="MKKLQRKKWKCREIGIEAVHNKGYAYQRKLDTLEEVKKGYFPIK RAIDLVLSIVLLFLTFPIMFIFAIAIVIDSPGNPIYSQVRVGKMGKLIKIYKLRSMCK NAEKNGAQWADKDDDRITNVGKFIRKTRIDELPQLINVVKGEMSFIGPRPERPEFVEL @@ -1534,7 +1504,7 @@ LMVVITGEGSR" CDS 123028..124194 /gene="wbnH" - /locus_tag="WILD_00111" + /locus_tag="WILD_00109" /EC_number="2.4.1.306" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P0DMP6" @@ -1549,12 +1519,11 @@ NVINASHLLSQYDTFILISKHEGLPISIIEAMATGLPVIASHVGGISELVTDNGICIV NNQPETIAKVLEKYLIDSDYIKMSNQSRKRYLECFTEEKMIKEVEDVYNGKSTQ" CDS 124175..125413 - /locus_tag="WILD_00112" + /locus_tag="WILD_00110" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:PFAM:PF04932.9" /codon_start=1 /transl_table=11 - /product="O-Antigen ligase" + /product="hypothetical protein" /translation="MENQHNSKYLTLLLIGLAVFIQQSSVIAGVNVSIADFITLLILV YLLFFANHLLKANHFLQFFIILYTYRMIITLCLLFFDDLIFITVKEVLASTVKYAFVV IYFYLGMIIFKLGNSKKVIVTSYIISSVTIGLFCIIAGLNKSPLLMKLLYFDEIRSKG @@ -1564,13 +1533,11 @@ EWGILFGALFIIFMIYLLFELFRFNISGKNVTAIVVMLTMLIYFLTVSFNNSRYVAFI LGIIVFIVQYEKMERDRNEE" CDS 125403..126833 - /gene="rfbX" - /locus_tag="WILD_00113" + /locus_tag="WILD_00111" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:P37746" /codon_start=1 /transl_table=11 - /product="Putative O-antigen transporter" + /product="hypothetical protein" /translation="MKSDSLKENIIYQGLYQLIRTMTPLITIPIISRAFGPSGVGIVS FSFNIVQYFLMIASVGVQLYFNRVIAKSVNDKRQLSQQFWDIFVSKLFLALTVFAMYM VVITIFIDDYYLIFLLQGIYIIGAALDISWFYAGTEKFKIPSLSNIVASVIVLSVVVI @@ -1582,19 +1549,20 @@ VYLLLMMTMKNQYVWQILRHLRHKTI" CDS 127101..127700 /gene="sodM" - /locus_tag="WILD_00114" + /locus_tag="WILD_00112" /EC_number="1.15.1.1" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:P66831" + /inference="similar to AA sequence:UniProtKB:Q2G261" /codon_start=1 /transl_table=11 /product="Superoxide dismutase [Mn/Fe] 2" + /db_xref="COG:COG0605" /translation="MAFKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVE GTELEHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDDI KAQWGTLDEFKNEFANKATTLFGSGWTWLVVNDGKLEIVTTPNQDNPLTEGKTPILLF DVWEHAYYLKYQNKRPDYMTAFWNIVNWKKVDELYQAAK" CDS 128069..128734 - /locus_tag="WILD_00115" + /locus_tag="WILD_00113" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -1605,13 +1573,11 @@ QQPHMQQGHMQSSNHQMNQSNKKVLPAAGESMTSSILTASIAALLLVSGLFLAFRQRS TNK" CDS complement(128836..129576) - /gene="treR" - /locus_tag="WILD_00116" + /locus_tag="WILD_00114" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:P39796" /codon_start=1 /transl_table=11 - /product="Trehalose operon transcriptional repressor" + /product="hypothetical protein" /translation="MTQTQPKFLTIYNTLYKEIQIGKYPSGHALPTEKELCARFDVSR MTLRQAIKLLAEDGIVESTRGKGHFVIPQTNAQHASSMDQFKHPLDQILLDRVSMSSI NYRVDLESEYTNHLFANHPSAVIAMERYYQKKDNHSKQADAFCFTFIPLNVIDTFKVN @@ -1619,26 +1585,27 @@ PYPIMINKWYIPQEISELTLTRIRQSDY" CDS 129827..130534 /gene="deoD" - /locus_tag="WILD_00117" + /locus_tag="WILD_00115" /EC_number="2.4.2.1" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:Q5EEL8" + /inference="similar to AA sequence:UniProtKB:Q81T09" /codon_start=1 /transl_table=11 /product="Purine nucleoside phosphorylase DeoD-type" + /db_xref="COG:COG0813" /translation="MKSTPHIKPMNDVEIAETVLLPGDPLRAKFIAETYLDDVEQFNT VRNMFGFTGTYKGKKVSVMGSGMGMPSIGIYSYELIHTFGCKKLIRVGSCGAMQENID LYDVIVAQGASTDSNYVQQYQLPGHFAPIASYQLLEKAVETARDKGVRHHVGNVLSSD IFYNADTTASERWMRMGILGVEMESAALYMNAIYAGVEALGVFTVSDHLIHETSTTPE ERERAFTDMIEIALSLV" CDS 130535..131893 - /gene="norB_2" - /locus_tag="WILD_00118" + /gene="tet(38)" + /locus_tag="WILD_00116" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:A6QGY6" + /inference="similar to AA sequence:BARRGD:A7J11_02299" /codon_start=1 /transl_table=11 - /product="Quinolone resistance protein NorB" + /product="tetracycline efflux MFS transporter Tet(38)" /translation="MIMNVEYSKIKKAVPILLFLFVFSLVIDNSFKLISVAIADDLNI SVTTVSWQATLAGLVIGIGAVVYASLSDAISIRTLFIYGVILIIIGSIIGYIFQHQFA LLLVGRIIQTAGLAAAETLYVIYVAKYLSKEDQKTYLGLSTSSYSLSLVIGTLSGGFI @@ -1650,7 +1617,7 @@ EK" CDS 131974..132636 /gene="deoC1" - /locus_tag="WILD_00119" + /locus_tag="WILD_00117" /EC_number="4.1.2.4" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P99102" @@ -1664,7 +1631,7 @@ DY" CDS 132664..133842 /gene="deoB" - /locus_tag="WILD_00120" + /locus_tag="WILD_00118" /EC_number="5.4.2.7" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P99100" @@ -1681,12 +1648,13 @@ " CDS complement(133973..134788) /gene="phnE_1" - /locus_tag="WILD_00121" + /locus_tag="WILD_00119" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:A0QQ68" /codon_start=1 /transl_table=11 /product="Phosphate-import permease protein PhnE" + /db_xref="COG:COG3639" /translation="MTQEIEKYNVHTKAHKRKLIKRWLIAIVVLAIIIWAFAGVPSLE LKSKSLEILKSIFSGLFHPDISYIYIPDGEDLLRGLLETFAIAVVGTFIAAIICIPLA FLGANNMVKLRPVSGVSKFILSVIRVFPEIVMALIFIKAVGPGSFSGVLALGIHSVGM @@ -1694,12 +1662,13 @@ SILGLIGAGGIGTPLIFAIQTRSWDRVGIILIGLVLMVAIVDLISGSIRKRIL" CDS complement(134785..135585) /gene="phnE_2" - /locus_tag="WILD_00122" + /locus_tag="WILD_00120" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:A0QQ68" /codon_start=1 /transl_table=11 /product="Phosphate-import permease protein PhnE" + /db_xref="COG:COG3639" /translation="MPLETPTKYDSLLKKKVSLKTSFTFMLIIVLIIWSFIYTGFNFG DLMIGIPQIGDLFKQMIPPDFEYLQQITTPMLDTIRMAIVSTVLGSIVSIPIALLCAS NIVHQKWTSIPSRFILNIVRTIPDLLLAAIFVAVFGIGQIPGILALFILTICIIGKLL @@ -1707,7 +1676,7 @@ VGAGGIGLFYDQTLGLFQYPKTATIILFTLVIVVVIDYISTKVRAHLA" CDS complement(135587..136360) /gene="glnQ" - /locus_tag="WILD_00123" + /locus_tag="WILD_00121" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P27675" /codon_start=1 @@ -1719,13 +1688,15 @@ ALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRI IGLRDGEVVYDGPASEATDDVFSKIYGRTIKEDEKLGVN" CDS complement(136574..137530) - /gene="phnD" - /locus_tag="WILD_00124" + /gene="phnD2" + /locus_tag="WILD_00122" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:A0QQ71" + /inference="similar to AA sequence:UniProtKB:A3PDP9" /codon_start=1 /transl_table=11 - /product="Phosphate-import protein PhnD" + /product="putative ABC transporter phosphonate/phosphite + binding protein PhnD2" + /db_xref="COG:COG3221" /translation="MKNFKCLFVLMLAVIVFAAACGNSSSLDNQKNASNDSDSKSGGY KPKELTVQFVPSQNAGTLEAKAKPLEKLLSKELGIPVKVSVSTNYNTIVEAMKSKKVD VGFLPPTAYTLAHDQKAADLLLQAQRFGVKEDGSASKELVDSYKSEILVKKDSKIKSL @@ -1733,7 +1704,7 @@ DAAAVFNDARNTVKKDQPNVFKDTRILKLTQAIPNDTISVRPDMDKDFQEKLKKAFID IAKSKEGHKIISEVYSHEGYTETKDSNFDIVREYEKLVKDMK" CDS 137759..139303 - /locus_tag="WILD_00125" + /locus_tag="WILD_00123" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -1750,13 +1721,14 @@ ITTDFK" CDS 139354..140889 /gene="yfkN" - /locus_tag="WILD_00126" + /locus_tag="WILD_00124" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:O34313" /codon_start=1 /transl_table=11 /product="Trifunctional nucleotide phosphoesterase protein YfkN" + /db_xref="COG:COG0737" /translation="MSNIAFYVVSDVHGYIFPTDFTSRNQYQPMGLLLANHVIEQDRR QYDQSFKIDNGDFLQGSPFCNYLIAHSGSSQPLVDFYNRMAFDFGTLGNHEFNYGLPY LKDTLRRLNYPVLCANIYENDSTLTDNGVQYFQVGDQTVGVIGLTTQFIPHWEQPEHI @@ -1768,7 +1740,7 @@ KQTYTICVNNYRAVGGGQYDMYIDAPVVKDIQVEGAQLLIDFLSNNKLMRIPQVVDFK VEK" CDS 141037..141813 - /locus_tag="WILD_00127" + /locus_tag="WILD_00125" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -1779,7 +1751,7 @@ SNRDINSYFLIITYRIDKESKQLAAIKQWLPNPETNSAIMVDDLTPLLDKVIVEREDY HIDEEELEVLKNDGELEFIDVEHAFGISIDEDNDMIESER" CDS 141819..142994 - /locus_tag="WILD_00128" + /locus_tag="WILD_00126" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -1793,12 +1765,13 @@ NSLLKLYFDRNILTPQKLLNYLKVDETFLNHLAGINLKLFKDYVNENREYNITNLYK" CDS 143380..145989 /gene="adhE" - /locus_tag="WILD_00129" + /locus_tag="WILD_00127" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P0A9Q7" /codon_start=1 /transl_table=11 /product="Aldehyde-alcohol dehydrogenase" + /db_xref="COG:COG1012" /translation="MLTIPEKENRGSKEQEVAIMIDALADKGKKALEALSKKSQEEIN HIVHQMSLAAVDQHMVLAKLAHEETGRGIYEDKAIKNLYASEYIWNSIKDNKTVGIIG EDKEKGLTYVAEPIGVICGVTPTTNPTSTTIFKAMIAIKTGNPIIFAFHPSAQESSKR @@ -1817,13 +1790,14 @@ IKDIIQTSYDYKQ" CDS 146334..147002 /gene="cap8A" - /locus_tag="WILD_00130" + /locus_tag="WILD_00128" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P72367" /codon_start=1 /transl_table=11 /product="Capsular polysaccharide type 8 biosynthesis protein cap8A" + /db_xref="COG:COG3944" /translation="MESTLELTKIKEVLQKNLKILIILPLLFLIISAIVTFFVLSPKY QANTQILVNQTKGDNPQFMAQEVQSNIQLVNTYKEIVKSPRILDEVSKDLNDKYSPSK LSSMLTITNQENTQLINIQVKSGHKQDSEKIANSFAKVTSKQIPKIMSVDNVSILSKA @@ -1831,13 +1805,14 @@ QKFN" CDS 147018..147704 /gene="ywqD" - /locus_tag="WILD_00131" + /locus_tag="WILD_00129" /EC_number="2.7.10.2" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P96716" /codon_start=1 /transl_table=11 /product="Tyrosine-protein kinase YwqD" + /db_xref="COG:COG0489" /translation="MSKKENTTTTLFVYEKPKSTISEKFRGIRSNIMFSKANGEVKRL LVTSEKPGAGKSTVVSNVAITYAQAGYKTLIIDGDMRKPTQNYIFNEQNNNGLSNLII GRTTMSEAITTTEIDNLDLLTAGPVPPNPTELIGSERFKELVNLFNERYDIIIVDTPP @@ -1845,13 +1820,14 @@ SSYYHYYGDE" CDS 147707..148471 /gene="ywqE" - /locus_tag="WILD_00132" + /locus_tag="WILD_00130" /EC_number="3.1.3.48" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P96717" /codon_start=1 /transl_table=11 /product="Tyrosine-protein phosphatase YwqE" + /db_xref="COG:COG4464" /translation="MIDIHNHILPNIDDGPTNETEMLDLLRQATTQGVTEIIVTSHHL HPRYTTPIEKVKSCLNHIESLEEVQALNLKFYYGQEIRITDQILNDIDRKVITGINDS RYLLIEFPSNEVPHYTDQLFFELQSKGFVPIIAHPERNKAISQNLDILYDLINKGALS @@ -1859,13 +1835,14 @@ EDMNGFISNAKLVVDDKKIPKRMPQQDYKQKRWFGL" CDS 148491..150314 /gene="pglF" - /locus_tag="WILD_00133" + /locus_tag="WILD_00131" /EC_number="4.2.1.135" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:Q0P9D4" /codon_start=1 /transl_table=11 /product="UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase" + /db_xref="COG:COG1086" /translation="MAHLSVKLRLLILALIDSLIVTFSVFVSYYILEPYFKTYSVKLL ILAAISLFISHHISAFIFNMYHRAWEYASVSELILIVKAVTTSIVITMVFVTIVTGNR PFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNKKPTLVVGAGQAGSMLIRQML @@ -1879,13 +1856,14 @@ GKVQHMKCNEVEAIIQDIVNDFSKEKIINYANGKKGDNYVR" CDS 150304..151332 /gene="capD" - /locus_tag="WILD_00134" + /locus_tag="WILD_00132" /EC_number="5.1.3.2" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:Q9ZDJ5" /codon_start=1 /transl_table=11 /product="UDP-glucose 4-epimerase" + /db_xref="COG:COG1086" /translation="MFDDKILLITGGTGSFGNAVMKWFLDSNIKEIRIFSRDEKKQDD IRKKYNNSKLKFYIGDVRDSQSVETAMRDVDYVFHAAALKQVPSCEFFPVEAVKTNII GTENVLQSAIHQNVKKVICLSTDKAAYPINAMGISKAMMEKVFVAKSRNIRSEQTLIC @@ -1895,7 +1873,7 @@ NDYKASMR" CDS 151345..152454 /gene="wbjC" - /locus_tag="WILD_00135" + /locus_tag="WILD_00133" /EC_number="1.1.1.367" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:Q9XC60" @@ -1912,7 +1890,7 @@ YTHNIENLGDTDMVTIMWVNEMFDPNQPDTYFLEV" CDS 152458..153582 /gene="wbpI" - /locus_tag="WILD_00136" + /locus_tag="WILD_00134" /EC_number="5.1.3.23" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:G3XD61" @@ -1920,6 +1898,7 @@ /transl_table=11 /product="UDP-2,3-diacetamido-2,3-dideoxy-D-glucuronate 2-epimerase" + /db_xref="COG:COG0381" /translation="MEKLKLMTIVGTRPEIIRLSSTIKACDQYFNQILVHTGQNYDYT LNQIFFDDLELRQPDHYLEAVGSNLGETMGNIIAKTYDVLLREQPDALLILGDTNSCL AAVSAKRLKIPVFHMEAGNRCFDQNVPEEINRKIVDHVSDVNLPYTEHSRRYLLDEGF @@ -1928,7 +1907,7 @@ VVLSDSGTLSEESSILKFPGVLIRTSTERPEVLDKGTVIIGGITYNNLIQSVELAREM QNNNEPMIDAIDYKDTNVSTKVVKIIQSYKDIINRNTWRK" CDS 153585..154664 - /locus_tag="WILD_00137" + /locus_tag="WILD_00135" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -1941,7 +1920,7 @@ YYALFLNKPIITTDDTFTATEANKFGLGFSVNPENLKGIGDELMDWYNNLNVMDINHK REAYRNDVIENNKQFYQEIGRIFNE" CDS 154657..156051 - /locus_tag="WILD_00138" + /locus_tag="WILD_00136" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -1956,25 +1935,25 @@ IFFAFLSEYIIRKSHSLEVIFIGTYIYMRLITSIFSHPTPLITLISMILVVYVIAIIP GIIIKKFTKKVGIE" CDS 156048..156605 - /gene="maa" - /locus_tag="WILD_00139" - /EC_number="2.3.1.79" + /gene="dapH" + /locus_tag="WILD_00137" + /EC_number="2.3.1.89" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:P77791" + /inference="protein motif:HAMAP:MF_01691" /codon_start=1 /transl_table=11 - /product="Maltose O-acetyltransferase" + /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate + N-acetyltransferase" /translation="MIVKTFMKSKIFRLMNTPLLLFYKKEYLTGYYFENKVAGWLWAW KAVPFKLLGINTSLPFPADITVRMHNPNNIVFDKNDIHIFQSPGTYFNNFSAVIYIGR GVYIAPNVGIITANHNIKNLKSHAPGEDVKIGNYSWIGMNSVILPGVELGEHTIVGAG SVVTKSFPEGNVVIGGNPAKVIKKI" CDS 156614..157852 - /locus_tag="WILD_00140" + /locus_tag="WILD_00138" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:PFAM:PF01943.11" /codon_start=1 /transl_table=11 - /product="Polysaccharide biosynthesis protein" + /product="hypothetical protein" /translation="MRLNKFIGDSFLMILSSGIAQVILIITTPIITRLYSPTEFGEFT IFSNIAMILIPIINARYDLLIVNTKNDRSANILSQISFLISLLILLILIPIFAISAWL YPNFILDFIFIIIMLFLVSLTNIFTNYLNKERKYKVLSLINVFRAGSMALLQIIFGLL @@ -1984,12 +1963,11 @@ LIVSTVSLSVIVLQKQQLELILQALFLIGTTATFVISKMLNLTFLNFVSINTVVLIVS YMIFFIALYYFAKNKQFKNS" CDS 157886..159091 - /locus_tag="WILD_00141" + /locus_tag="WILD_00139" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:CDD:PRK10307" /codon_start=1 /transl_table=11 - /product="putative glycosyl transferase" + /product="hypothetical protein" /translation="MSEKKILILCQYFYPEYVSSATLPTQLAEDLIANHINVDVMCGW PYEYSNHKQVSKTEMHRGIRIRRLKYSRFNNKSKVGRIINFFSLFSKFVINIPKMLKY DQILVYSNPPILPLIPDVLHRLLKKKYSFVVYDIAPDNAIKTGATRPGSMIDKLMRYI @@ -2000,27 +1978,27 @@ TMKYYNLLK" CDS 159102..159659 /gene="epsL" - /locus_tag="WILD_00142" + /locus_tag="WILD_00140" /EC_number="2.-.-.-" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P71062" /codon_start=1 /transl_table=11 /product="putative sugar transferase EpsL" + /db_xref="COG:COG2148" /translation="MKRLFDVVSSIYGLVVLSPILLITALLIKMESPGPAIFKQKRPT INNELFNIYKFRSMKIDTPNVATDLMDSTAYITKTGKVIRKTSIDELPQLLNVLKGEM SIVGPRPALYNQYELIEKRTKANVHTIRPGVTGLAQVMGRDDITDDQKVAYDHYYLTH QSMMLDMYIIYKTIKNIVTSEGVHH" CDS 159659..160546 - /gene="gnu" - /locus_tag="WILD_00143" - /EC_number="5.1.3.26" + /gene="fcl" + /locus_tag="WILD_00141" + /EC_number="1.1.1.271" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:Q8X7P7" + /inference="protein motif:HAMAP:MF_00956" /codon_start=1 /transl_table=11 - /product="N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans, - octacis-undecaprenol 4-epimerase" + /product="GDP-L-fucose synthase" /translation="MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSF KGYDVLIHTAALVHNNSPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYG KEGQVGKSDQIDTQTPMNPTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCP @@ -2029,13 +2007,14 @@ KMSLVIADIMDETTTKDKA" CDS 160600..161862 /gene="wecC" - /locus_tag="WILD_00144" + /locus_tag="WILD_00142" /EC_number="1.1.1.336" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P27829" /codon_start=1 /transl_table=11 /product="UDP-N-acetyl-D-mannosamine dehydrogenase" + /db_xref="COG:COG0677" /translation="MKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQSGQI SIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALD SILPFLEKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILE @@ -2046,13 +2025,14 @@ FDTKNVVKSSFEDVSYYNYGNIFNFIDK" CDS 161909..163084 /gene="mnaA" - /locus_tag="WILD_00145" + /locus_tag="WILD_00143" /EC_number="5.1.3.14" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P39131" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine 2-epimerase" + /db_xref="COG:COG0381" /translation="MCLNFREDNVMKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANI VITAQHRDMLDSVLSIFDIQADHDLNIMQDQQTLAGITANALAKLDSIINEEQPDMIL VHGDTTTTFVGSLAAFYHQIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPT @@ -2062,30 +2042,32 @@ VRNVKQLIEDDEAYQRMSQANNPYGDGQASRRICEAIEYYFGLRSDKPDEFVPLRRK" CDS complement(163149..163475) /gene="isdI" - /locus_tag="WILD_00146" + /locus_tag="WILD_00144" /EC_number="1.14.99.48" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:Q7A827" + /inference="similar to AA sequence:UniProtKB:Q2G1J2" /codon_start=1 /transl_table=11 /product="Heme oxygenase (staphylobilin-producing) 2" + /db_xref="COG:COG2329" /translation="MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLN TKDTDEVKILTIWESEDSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKYDI GYHYQK" CDS complement(163482..163865) /gene="ybaN" - /locus_tag="WILD_00147" + /locus_tag="WILD_00145" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P0AAR5" /codon_start=1 /transl_table=11 /product="Inner membrane protein YbaN" + /db_xref="COG:COG2832" /translation="MRLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDR FYNWLINQKIYKEYVENFYLHRGYTLQQKIKILISLYIVIGFSIYMVDVLAVRIGLII MVIIQTAVLFTFVKTLPKSNNKIEE" CDS 164292..165779 /gene="aldA" - /locus_tag="WILD_00148" + /locus_tag="WILD_00146" /EC_number="1.2.1.3" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:Q7A825" @@ -2103,12 +2085,13 @@ VPEGAPFGGYKKSGIGRETYKGALSNYQQVKNIYIDTSNALKGLY" CDS 166426..167385 /gene="czcD" - /locus_tag="WILD_00149" + /locus_tag="WILD_00147" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:O07084" /codon_start=1 /transl_table=11 /product="Cadmium, cobalt and zinc/H(+)-K(+) antiporter" + /db_xref="COG:COG1230" /translation="MNGKKANTINRYKYFHHVDHQKIQQSSKKTLWASLIITLLFTVI EFVGGLVSNSLALLSDSFHMLSDVLALGLSMLAIYFASKKPTARYTFGYLRFEILAAF LNGLALIVISIWILYEAIVRIIYPQPIESGIMFMIASIGLLVNIILTVILVRSLKQED @@ -2116,7 +2099,7 @@ AWLILMESVPQHLDTDQIIADIKNIDGILDVHEFHLWSITTEHYSLSAHVVLDKKYEG DDYQAIDQVSSLLKEKYGIAHSTLQIENLQLNPLDEPYFDKLT" CDS complement(167447..167650) - /locus_tag="WILD_00150" + /locus_tag="WILD_00148" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -2124,7 +2107,7 @@ /translation="MDKESVVASLARNKKIAVETMTGQRYIIERILHTNDEKHIHILK PKDVVLDVDTIKDIDENHLDDAT" CDS 167830..168342 - /locus_tag="WILD_00151" + /locus_tag="WILD_00149" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -2135,7 +2118,7 @@ DTPIDGIEKL" CDS 168684..169424 /gene="cmpD" - /locus_tag="WILD_00152" + /locus_tag="WILD_00150" /EC_number="3.6.3.-" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:Q55463" @@ -2148,14 +2131,11 @@ KLQDQLVQLKHKTESTIILVTHDIDEAIYLSDRIVLLGEGCNIISQYEITASHPRSRN DSHLLKIRNEIMETFALNHHQVEPEYYL" CDS 169438..170412 - /gene="cmpC" - /locus_tag="WILD_00153" - /EC_number="3.6.3.-" + /locus_tag="WILD_00151" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:Q55462" /codon_start=1 /transl_table=11 - /product="Bicarbonate transport ATP-binding protein CmpC" + /product="hypothetical protein" /translation="MKRLSIIVIIGIFIITGCDWQRASKEPSNNAQHQQVIKIGYLPI THSVNLMMTKKLLSQHNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQ KGSNIKAVALGHHEGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLLEALREQL @@ -2164,20 +2144,21 @@ AWTSYGDLTIKPSGYQEITTLVKQHHLFNPPAYDDFVEPSLYKEASRS" CDS 170409..171170 /gene="ssuC" - /locus_tag="WILD_00154" + /locus_tag="WILD_00152" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P75851" /codon_start=1 /transl_table=11 /product="Putative aliphatic sulfonates transport permease protein SsuC" + /db_xref="COG:COG0600" /translation="MTRLTINKIILPIITFIIFLGIWEMVIIIGHYQPVLLPGPALVG KSIWTFIVTGEIFQHLAISLWRFVAGFVVALLVAIPLGFLLGRNRWLYNAIEPLFQLI RPISPIAWAPFVVLWFGIGSLPAIAIIFIAAFFPIVFNTIKGVRDIEPQYLKIAANLN LTGWSLYRNILFPGAFKQIMAGIHMAVGTSWIFLVSGEMIGAQSGLGFLIVDARNMLN LEDVLAAIFFIGLFGFIIDRFISYIEQFILRRFGE" CDS 171180..172214 - /locus_tag="WILD_00155" + /locus_tag="WILD_00153" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -2190,7 +2171,7 @@ SHLNELISLKKDIGYLLLDVNQASVVNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRH LGKLEAELKG" CDS 172428..172787 - /locus_tag="WILD_00156" + /locus_tag="WILD_00154" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -2199,8 +2180,8 @@ MTGVLSKVESFYLNDKRNESMLHYTRTEKIKQMYKEIDVNEMESVVGAKFVKLFTDID LNDDEVISIFVFDKSIE" CDS 172811..173986 - /locus_tag="WILD_00157" - /EC_number="1.2.1.2" + /locus_tag="WILD_00155" + /EC_number="1.17.1.9" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P33160" /codon_start=1 @@ -2214,12 +2195,11 @@ KDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAGDVWYPQPAPADHPWRTM PRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDIIVASGRIASKSYTAK" CDS 174537..175622 - /locus_tag="WILD_00158" + /locus_tag="WILD_00156" /inference="ab initio prediction:Prodigal:2.6" - /inference="protein motif:CDD:PRK10054" /codon_start=1 /transl_table=11 - /product="putative transporter" + /product="hypothetical protein" /translation="MSIISGYLIEIFPKKLLVLIYQATMVIMLVFMGIFGSHQLWQII GFCVAYAIFTIVWGLQFPVMDTLIMDAITEDVEHYIYKISYWMTNLSVAIGALLGGLM YGYSMLLLFLIAACIFLIVLFILYIWLPQDRNQVKQSDDKKHASRYQKLQIMNIFRSY @@ -2228,13 +2208,15 @@ VGEIIYSPIVSEQRFKIIPKAKRGTYSAVNALGIHFSETLARLGIVLGAFLTTLQMGL YMFIVLTIGASMLVAGVFGGQKQVNTN" CDS 176069..183244 - /gene="srfAB" - /locus_tag="WILD_00159" + /gene="dltA" + /locus_tag="WILD_00157" + /EC_number="6.1.1.13" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:Q04747" + /inference="protein motif:HAMAP:MF_00593" /codon_start=1 /transl_table=11 - /product="Surfactin synthase subunit 2" + /product="D-alanine--poly(phosphoribitol) ligase subunit + 1" /translation="MIMGNLRFQQEYFRIYKNNTESTTHRNAYWVKLAKNIEATKMMY ALSTIVQQHASIRHFFDVTTDDNLTMILHEFLPFIEIKQVPSSSANYDLEAFFKQELS TYHFNDSPLFKFKLFQFADAAYILLDFHVSIFDDSQIDIFLDDLCNAYRGNTVINNTR @@ -2278,39 +2260,38 @@ VKSLLECVKCKEIELVSDESFNEILQKQDMYETIGLTSVDREQQLAMIDTKLTLKIMD HISEKWPTITNNWLYHWAQYIKTIFNK" CDS 183257..183901 - /gene="sfp" - /locus_tag="WILD_00160" - /EC_number="2.7.8.-" + /locus_tag="WILD_00158" /inference="ab initio prediction:Prodigal:2.6" - /inference="similar to AA sequence:UniProtKB:P39135" /codon_start=1 /transl_table=11 - /product="4'-phosphopantetheinyl transferase sfp" + /product="hypothetical protein" /translation="MTVFVMQLQSNLKSIEELISQSRWSYKKPRTVNYRYNQDKLMHR LGDILVQYGIQHDTGLLPHEWHYHISPRGKADIVQHNRDGQPIYVSLSYSYPYIVCVV DKEPVGIDIEKISQRLDWRTLVTCFSTNEAHQICSLNDFYQIWTQKESFTKLIGEGLI KGLDIYDMTQSHFYQSREVKFKQFIFDQFMVQVCFLGQAPWGYKKVSVFQLLSS" CDS complement(184230..184724) /gene="yagU" - /locus_tag="WILD_00161" + /locus_tag="WILD_00159" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P0AAA1" /codon_start=1 /transl_table=11 /product="Inner membrane protein YagU" + /db_xref="COG:COG3477" /translation="MTKRQMGIFIYAGIIGGLLSGIVKLGWEVMFPPRTPERNATNPP QELLQQLGFSSEFTHQTYTFSNMQLPWVSFIVHFSFSIVIAIIYCILVKKYAYLAMGQ GAVFGIAIWVLFHLIIMPIMHTVPAVWDQPFQEHLSEFFGHIVWMMTIELVRQHFVYR YKLN" CDS complement(184994..185764) /gene="argB" - /locus_tag="WILD_00162" + /locus_tag="WILD_00160" /EC_number="2.7.2.8" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:Q9HTN2" /codon_start=1 /transl_table=11 /product="Acetylglutamate kinase" + /db_xref="COG:COG0548" /translation="MKFIVIKIGGSTLSDMHPSIINNIKHLRSNNIYPIIVHGGGPFI NEALSNQQIEPHFVNGLRVTDKATMTITKHTLIADVNTALVAQFNQQQCSAIGLCGLD AQLFEIKRFDQQYGYVGVPTTLNIDSLSYLCTKFVPIINSIGFNNHDGEFYNINADTL @@ -2318,7 +2299,7 @@ AIKNGCPKVIIASGNKPNIIEAIYNNDFVGTTILKSSV" CDS complement(185780..187021) /gene="argJ" - /locus_tag="WILD_00163" + /locus_tag="WILD_00161" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:Q07908" /codon_start=1 @@ -2334,7 +2315,7 @@ ATAYGCDLSYDYVRINASYRT" CDS complement(187033..188067) /gene="argC" - /locus_tag="WILD_00164" + /locus_tag="WILD_00162" /EC_number="1.2.1.38" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:Q07906" @@ -2350,7 +2331,7 @@ TGLKQSPVYP" CDS complement(188103..189287) /gene="rocD2" - /locus_tag="WILD_00165" + /locus_tag="WILD_00163" /EC_number="2.6.1.13" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P60298" @@ -2367,13 +2348,14 @@ KN" CDS complement(189540..190895) /gene="brnQ" - /locus_tag="WILD_00166" + /locus_tag="WILD_00164" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P0AD99" /codon_start=1 /transl_table=11 /product="Branched-chain amino acid transport system 2 carrier protein" + /db_xref="COG:COG1114" /translation="MKKKLTFKENMFIGSMLFGLFFGAGNLIFPIHLGQAAGSNVFIA NLGFLITAIGLPFLGIIAIGISKTSGLFEIASRVNKTYAYIFTIALYLVIGPFFALPR LATTSFEIAFSPFLSPKQITLYLFIFSFVFFVIAWFFARKPSRILEYIGKFLNPVFLV @@ -2385,26 +2367,28 @@ A" CDS complement(191173..191730) /gene="yecD" - /locus_tag="WILD_00167" + /locus_tag="WILD_00165" /EC_number="3.-.-.-" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P0ADI7" /codon_start=1 /transl_table=11 /product="Isochorismatase family protein YecD" + /db_xref="COG:COG1335" /translation="MINFDKTALVLIDLQQGILKMDYAPHTAENVVQNANKLIEAFRK NNGFIAFVRVNFYDGKDALQPNAMISLPPKEGDDYSHFHYLLDKRDDDFVIDKRQFSA FVGTDLDLQLRRRGIDTIVLGGVATHVGVDTTARDAYQLNYDQYFVTDMMSAQNETLH QFPIDNVFPLMGQTITTNDLLNILN" CDS complement(191797..193437) /gene="ipdC" - /locus_tag="WILD_00168" + /locus_tag="WILD_00166" /EC_number="4.1.1.74" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P23234" /codon_start=1 /transl_table=11 /product="Indole-3-pyruvate decarboxylase" + /db_xref="COG:COG3961" /translation="MKQRIGAYLIDAIHRAGVDKIFGVPGDFNLAFLDDIISNPNVDW VGNTNELNASYAADGYARLNGLAALVTTFGVGELSAVNGIAGSYAERIPVIAITGAPT RAVEQAGKYVHHSLGEGTFDDYRKMFAHITVAQGYITPENAATEIPRLINTAIAERRP @@ -2416,7 +2400,7 @@ VLFVINNDGYTVERLIHGMYEPYNEIHMWDYKALPAVFGGKNVEIHDVESSKDLQEVF NTINGHPDVMYFVEVKMSVEDAPKKLIDIAKAFSQQNK" CDS 193568..193702 - /locus_tag="WILD_00169" + /locus_tag="WILD_00167" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 @@ -2425,7 +2409,8 @@ " CDS complement(193709..195754) /gene="ptsG" - /locus_tag="WILD_00170" + /locus_tag="WILD_00168" + /EC_number="2.7.1.199" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:Q7A807" /codon_start=1 @@ -2444,7 +2429,7 @@ PSQGEVRAPFNGKVQMIFPTKHAIGLVSDSGLELLIHIGLDTVKLNGEGFTLHVEEGQ EVKQGDLLINFDLDYIRNHAKSDITPIIVTQGNITNLDFKQGEHGNISFGDQLFEAK" CDS 196339..197394 - /locus_tag="WILD_00171" + /locus_tag="WILD_00169" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11