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view test-data/min_cov/snps.gff @ 5:0aa87d97847f draft

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"planemo upload commit 13d17dd18915767d3ca5bbd92ce3e5e80a287112"
author iuc
date Fri, 13 Sep 2019 05:45:21 -0400
parents 82f2b6f20fa2
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##gff-version 3
Wildtype	snippy:3.2-dev	variation	24388	24388	.	.	0	note=snp A=>G G:22 A:0 CDS + 1/702 1/233 initiator_codon_variant c.1A>G p.Met1? WILD_00022 walR Transcriptional regulatory protein WalR
Wildtype	snippy:3.2-dev	variation	29479	29479	.	.	0	note=snp T=>G G:21 T:0 CDS + 39/792 13/263 synonymous_variant c.39T>G p.Gly13Gly WILD_00026 yycJ Putative metallo-hydrolase YycJ
Wildtype	snippy:3.2-dev	variation	47299	47299	.	.	0	note=snp T=>A A:25 T:0 CDS + 54/1758 18/585 stop_gained c.54T>A p.Cys18* WILD_00043 mecR1 Methicillin resistance mecR1 protein
Wildtype	snippy:3.2-dev	variation	102969	102969	.	.	0	note=snp G=>C C:16 G:0 CDS - 87/1281 29/426 synonymous_variant c.87C>G p.Gly29Gly WILD_00093 spa Immunoglobulin G-binding protein A
Wildtype	snippy:3.2-dev	variation	103048	103048	.	.	0	note=snp T=>A A:21 T:0 CDS - 8/1281 3/426 missense_variant c.8A>T p.Lys3Met WILD_00093 spa Immunoglobulin G-binding protein A
Wildtype	snippy:3.2-dev	variation	106602	106602	.	.	0	note=snp T=>G G:22 T:0 CDS - 993/993 331/330 stop_lost&splice_region_variant c.993A>C p.Ter331Tyrext*? WILD_00097 yfiY putative siderophore-binding lipoprotein YfiY
Wildtype	snippy:3.2-dev	variation	109833	109833	.	.	0	note=snp T=>A A:17 T:0 CDS + 1/1755 1/584 initiator_codon_variant c.1T>A p.Leu1? WILD_00100 iucC_1 Aerobactin synthase
Wildtype	snippy:3.2-dev	variation	114540	114540	.	.	0	note=del ATTGTGA=>ATGTGA ATGTGA:26 ATTGTGA:0 CDS + 1717/1737 573/578 frameshift_variant c.1717delT p.Cys573fs WILD_00102 iucA N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase
Wildtype	snippy:3.2-dev	variation	129881	129881	.	.	0	note=mnp GT=>AA AA:19 GT:0 CDS + 55/708 19/235 missense_variant c.55_56delGTinsAA p.Val19Asn WILD_00117 deoD Purine nucleoside phosphorylase DeoD-type
Wildtype	snippy:3.2-dev	variation	160547	160547	.	.	0	note=del GTC=>GC GC:18 GTC:0
Wildtype	snippy:3.2-dev	variation	190866	190866	.	.	0	note=del GTTTTCTTTAA=>GTTTCTTTAA GTTTCTTTAA:17 GTTTTCTTTAA:0 CDS - 26/1356 9/451 frameshift_variant c.26delA p.Asn10fs WILD_00166 brnQ Branched-chain amino acid transport system 2 carrier protein