Mercurial > repos > iuc > snpeff
annotate snpEff_macros.xml @ 8:ce135864629c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 9d2052269bfbca81a5f9cd10c3153e611358a329
author | iuc |
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date | Tue, 24 Oct 2017 07:27:53 -0400 |
parents | 7adfd0589f49 |
children | 68693743661e |
rev | line source |
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0 | 1 <macros> |
2 <xml name="requirements"> | |
3 <requirements> | |
8
ce135864629c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 9d2052269bfbca81a5f9cd10c3153e611358a329
iuc
parents:
7
diff
changeset
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4 <requirement type="package" version="4.3r">snpeff</requirement> |
0 | 5 </requirements> |
6 </xml> | |
7 <xml name="stdio"> | |
8 <stdio> | |
9 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> | |
10 <exit_code range="1:" level="fatal" description="Error" /> | |
11 </stdio> | |
12 </xml> | |
3
b24873564cf6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 21b46ae2c90ba7e569b2b3a9eaf938f8dedb2c31
iuc
parents:
1
diff
changeset
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13 <xml name="version_command"> |
4
698ef30638a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 00efb7078cfb3664ef048925d0a6b02d8578c27d
iuc
parents:
3
diff
changeset
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14 <version_command><![CDATA[ |
7
7adfd0589f49
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 5c6d595ecbf2e4e39c25662a165c9e475e01ecd1
iuc
parents:
4
diff
changeset
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15 snpEff -version |
4
698ef30638a8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 00efb7078cfb3664ef048925d0a6b02d8578c27d
iuc
parents:
3
diff
changeset
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16 ]]></version_command> |
3
b24873564cf6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 21b46ae2c90ba7e569b2b3a9eaf938f8dedb2c31
iuc
parents:
1
diff
changeset
|
17 </xml> |
8
ce135864629c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 9d2052269bfbca81a5f9cd10c3153e611358a329
iuc
parents:
7
diff
changeset
|
18 <token name="@WRAPPER_VERSION@">4.3r</token> |
7
7adfd0589f49
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 5c6d595ecbf2e4e39c25662a165c9e475e01ecd1
iuc
parents:
4
diff
changeset
|
19 <token name="@SNPEFF_VERSION@">SnpEff4.3</token> |
7adfd0589f49
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 5c6d595ecbf2e4e39c25662a165c9e475e01ecd1
iuc
parents:
4
diff
changeset
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20 <token name="@SNPEFF_DATABASE_URL@">https://sourceforge.net/projects/snpeff/files/databases/v4_3/</token> |
0 | 21 <token name="@EXTERNAL_DOCUMENTATION@"> |
7
7adfd0589f49
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 5c6d595ecbf2e4e39c25662a165c9e475e01ecd1
iuc
parents:
4
diff
changeset
|
22 For details about this tool, please go to: http://snpeff.sourceforge.net/SnpEff_manual.html |
0 | 23 </token> |
1 | 24 <xml name="citations"> |
25 <citations> | |
26 <citation type="doi">10.4161/fly.19695</citation> | |
27 <yield /> | |
28 </citations> | |
29 </xml> | |
0 | 30 </macros> |