Mercurial > repos > iuc > snpeff
comparison snpEff_databases.xml @ 22:268d162b9c49 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 02789207093cd84eaa6550149869c16b257d093b"
| author | iuc |
|---|---|
| date | Fri, 18 Oct 2019 06:12:18 -0400 |
| parents | 65ae79bddc69 |
| children |
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| 21:de67e5082c48 | 22:268d162b9c49 |
|---|---|
| 1 <tool id="snpEff_databases" name="SnpEff databases:" version="@WRAPPER_VERSION@.galaxy1"> | 1 <tool id="snpEff_databases" name="SnpEff databases:" version="@WRAPPER_VERSION@.galaxy2"> |
| 2 <description> list available databases</description> | 2 <description> list available databases</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>snpEff_macros.xml</import> | 4 <import>snpEff_macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <requirements> | 6 <requirements> |
| 10 <expand macro="version_command" /> | 10 <expand macro="version_command" /> |
| 11 <command><![CDATA[ | 11 <command><![CDATA[ |
| 12 snpEff databases | grep -v '^---' | sed 's/^Genome/#Genome/' | sed 's/ *//g' | 12 snpEff databases | grep -v '^---' | sed 's/^Genome/#Genome/' | sed 's/ *//g' |
| 13 | 13 |
| 14 #if $include_pattern: | 14 #if $include_pattern: |
| 15 | grep '${include_pattern}' | 15 | grep -e '^#' -e '${include_pattern}' |
| 16 #end if | 16 #end if |
| 17 | 17 |
| 18 #if $exclude_pattern: | 18 #if $exclude_pattern: |
| 19 | grep -v '${exclude_pattern}' | 19 | grep -v '${exclude_pattern}' |
| 20 #end if | 20 #end if |