Mercurial > repos > iuc > snpeff
comparison snpEff_macros.xml @ 25:5c7b70713fb5 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit a4c17efb8ec4b3a315766f5b5602effa275fade3
author | iuc |
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date | Wed, 03 Aug 2022 16:33:45 +0000 |
parents | cfcf33df7fc0 |
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24:cfcf33df7fc0 | 25:5c7b70713fb5 |
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16 </xml> | 16 </xml> |
17 <token name="@WRAPPER_VERSION@">4.3+T</token> | 17 <token name="@WRAPPER_VERSION@">4.3+T</token> |
18 <token name="@SNPEFF_VERSION@">SnpEff4.3</token> | 18 <token name="@SNPEFF_VERSION@">SnpEff4.3</token> |
19 <token name="@SNPEFF_DATABASE_URL@">https://sourceforge.net/projects/snpeff/files/databases/v4_3/</token> | 19 <token name="@SNPEFF_DATABASE_URL@">https://sourceforge.net/projects/snpeff/files/databases/v4_3/</token> |
20 <token name="@JAVA_OPTIONS@">-Xmx\${GALAXY_MEMORY_MB:-8192}m</token> | 20 <token name="@JAVA_OPTIONS@">-Xmx\${GALAXY_MEMORY_MB:-8192}m</token> |
21 <xml name="ref_select"> | |
22 <conditional name="reference_source"> | |
23 <param name="reference_source_selector" type="select" label="Choose the source for the reference genome"> | |
24 <option value="cached">Locally cached</option> | |
25 <option value="history">History</option> | |
26 </param> | |
27 <when value="cached"> | |
28 <param name="ref_file" type="select" label="Select reference genome"> | |
29 <options from_data_table="fasta_indexes"/> | |
30 </param> | |
31 </when> | |
32 <when value="history"> | |
33 <param name="input_fasta" type="data" format="fasta,fasta.gz" label="Genome in FASTA format" help="This dataset is required for generating SnpEff database. See help section below."/> | |
34 </when> | |
35 </conditional> | |
36 </xml> | |
21 <token name="@EXTERNAL_DOCUMENTATION@"> | 37 <token name="@EXTERNAL_DOCUMENTATION@"> |
22 | 38 |
23 | 39 |
24 ------- | 40 ------- |
25 | 41 |