Mercurial > repos > iuc > snpeff

comparison snpEff_download.xml @ 4:698ef30638a8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 00efb7078cfb3664ef048925d0a6b02d8578c27d
author iuc
date Fri, 16 Sep 2016 13:06:42 -0400
parents b24873564cf6
children 7adfd0589f49
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3:b24873564cf6 4:698ef30638a8
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <expand macro="version_command" /> 8 <expand macro="version_command" />
9 <command> 9 <command>
10 <![CDATA[ 10 <![CDATA[
11 @CONDA_SNPEFF_JAR_PATH@ &&
11 java -jar "\$SNPEFF_JAR_PATH/snpEff.jar" download -c "\$SNPEFF_JAR_PATH/snpEff.config" -dataDir "$snpeff_db.files_path" -v "$genome_version" 12 java -jar "\$SNPEFF_JAR_PATH/snpEff.jar" download -c "\$SNPEFF_JAR_PATH/snpEff.config" -dataDir "$snpeff_db.files_path" -v "$genome_version"
12 ]]> 13 ]]>
13 </command> 14 </command>
14 <inputs> 15 <inputs>
15 <param name="genome_version" type="text" value="" label="Select the genome version you want to download (e.g. GRCh37.74)"> 16 <param name="genome_version" type="text" value="" label="Select the genome version you want to download (e.g. GRCh37.74)">