comparison snpEff_macros.xml @ 3:b24873564cf6 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 21b46ae2c90ba7e569b2b3a9eaf938f8dedb2c31

2:e09ce114d240

<macros>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="4.0">snpEff</requirement>
        </requirements>
    </xml>
  <xml name="stdio">
    <stdio>
        <exit_code range=":-1"  level="fatal" description="Error: Cannot open file" />
        <exit_code range="1:"  level="fatal" description="Error" />
    </stdio>
  </xml>
  <token name="@WRAPPER_VERSION@">4.0</token>
  <token name="@SNPEFF_VERSION@">SnpEff4.0</token>
  <token name="@SNPEFF_DATABASE_URL@">https://snpeff-data.galaxyproject.org/databases/v4_0/</token>
  <token name="@EXTERNAL_DOCUMENTATION@">

For details about this tool, please go to:
	http://snpeff.sourceforge.net/SnpEff_manual.html

3:b24873564cf6

<macros>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="4.1">snpEff</requirement>
        </requirements>
    </xml>
  <xml name="stdio">
    <stdio>
        <exit_code range=":-1"  level="fatal" description="Error: Cannot open file" />
        <exit_code range="1:"  level="fatal" description="Error" />
    </stdio>
  </xml>
  <xml name="version_command">
    <version_command>java -jar "$SNPEFF_JAR_PATH/snpEff.jar" -version</version_command>
  </xml>
  <token name="@WRAPPER_VERSION@">4.1</token>
  <token name="@SNPEFF_VERSION@">SnpEff4.1</token>
  <token name="@SNPEFF_DATABASE_URL@">https://snpeff-data.galaxyproject.org/databases/v4_1/</token>
  <token name="@EXTERNAL_DOCUMENTATION@">

For details about this tool, please go to:
	http://snpeff.sourceforge.net/SnpEff_manual.html