comparison snpEff_macros.xml @ 30:c7275bd8b4d6 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 280d5247becaa9a70db9c5c4a2f1fc50d302838a

29:ca2b512e8d7c

<macros>
    <xml name="requirement">
        <requirement type="package" version="5.2">snpeff</requirement>
        <yield/>
    </xml>
  <xml name="stdio">
    <stdio>
        <exit_code range=":-1"  level="fatal" description="Error: Cannot open file" />
        <exit_code range="1:"  level="fatal" description="Error" />
    </stdio>

  <xml name="version_command">
    <version_command><![CDATA[
snpEff -version
    ]]></version_command>
  </xml>
  <token name="@WRAPPER_VERSION@">0</token>
  <token name="@SNPEFF_VERSION@">5.2</token>
  <token name="@JAVA_OPTIONS@">-Xmx\${GALAXY_MEMORY_MB:-8192}m</token>
  <xml name="ref_select">
    <conditional name="reference_source">
        <param name="reference_source_selector" type="select" label="Choose the source for the reference genome">
            <option value="cached">Locally cached</option>

30:c7275bd8b4d6

<macros>
  <token name="@TOOL_VERSION@">5.2</token>
  <token name="@VERSION_SUFFIX@">0</token>
  <token name="@SNPEFF_VERSION@">SnpEff5.2</token>
  <xml name="requirement">
      <requirement type="package" version="@TOOL_VERSION@">snpeff</requirement>
      <yield/>
  </xml>
  <xml name="stdio">
    <stdio>
        <exit_code range=":-1"  level="fatal" description="Error: Cannot open file" />
        <exit_code range="1:"  level="fatal" description="Error" />
    </stdio>

  <xml name="version_command">
    <version_command><![CDATA[
snpEff -version
    ]]></version_command>
  </xml>
  <token name="@JAVA_OPTIONS@">-Xmx\${GALAXY_MEMORY_MB:-8192}m</token>
  <xml name="ref_select">
    <conditional name="reference_source">
        <param name="reference_source_selector" type="select" label="Choose the source for the reference genome">
            <option value="cached">Locally cached</option>