Mercurial > repos > iuc > snpeff

comparison snpEff.xml @ 8:ce135864629c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 9d2052269bfbca81a5f9cd10c3153e611358a329
author iuc
date Tue, 24 Oct 2017 07:27:53 -0400
parents 7adfd0589f49
children 68693743661e
comparison
equal deleted inserted replaced
7:7adfd0589f49 8:ce135864629c
216 <option value="-noLof">Do not add LOF and NMD annotations</option> 216 <option value="-noLof">Do not add LOF and NMD annotations</option>
217 <option value="-noMotif">Disable motif annotations</option> 217 <option value="-noMotif">Disable motif annotations</option>
218 <option value="-noNextProt">Disable NextProt annotations</option> 218 <option value="-noNextProt">Disable NextProt annotations</option>
219 <option value="-noInteraction">Disable interaction annotations</option> 219 <option value="-noInteraction">Disable interaction annotations</option>
220 <option value="-cancer">Perform 'cancer' comparisons (somatic vs. germline)</option> 220 <option value="-cancer">Perform 'cancer' comparisons (somatic vs. germline)</option>
221 <!-- onlyReg option results in ifrequent exceptions with version 4.3k 221 <!-- onlyReg option results in frequent exceptions with version 4.3k
222 <option value="-onlyReg">Only use regulation tracks</option> 222 <option value="-onlyReg">Only use regulation tracks</option>
223 --> 223 -->
224 </param> 224 </param>
225 <!-- -cancerSamples <file> : Two column TXT file defining 'oringinal \t derived' samples. --> 225 <!-- -cancerSamples <file> : Two column TXT file defining 'oringinal \t derived' samples. -->
226 <param name="intervals" type="data" format="bed" optional="true" label="Use custom interval file for annotation"/> 226 <param name="intervals" type="data" format="bed" optional="true" label="Use custom interval file for annotation"/>