Mercurial > repos > iuc > snpeff
comparison data_manager_conf.xml @ 0:e8adfc4c0a6b draft
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author | iuc |
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date | Wed, 11 Dec 2013 08:53:32 -0500 |
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-1:000000000000 | 0:e8adfc4c0a6b |
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1 <?xml version="1.0"?> | |
2 <data_managers> | |
3 <data_manager tool_file="data_manager/data_manager_snpEff_databases.xml" id="data_manager_snpeff_databases" > | |
4 <data_table name="snpeff_databases"> <!-- Defines a Data Table to be modified. --> | |
5 <output> <!-- Handle the output of the Data Manager Tool --> | |
6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
8 </output> | |
9 </data_table> | |
10 </data_manager> | |
11 <data_manager tool_file="data_manager/data_manager_snpEff_download.xml" id="data_manager_snpeff_download" > | |
12 <data_table name="snpeff_genomedb"> <!-- Defines a Data Table to be modified. --> | |
13 <output> <!-- Handle the output of the Data Manager Tool --> | |
14 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
15 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
16 <column name="path" output_ref="out_file" > | |
17 <move type="directory" relativize_symlinks="True"> | |
18 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">snpEff/data</target> | |
19 </move> | |
20 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/snpEff/data</value_translation> | |
21 <value_translation type="function">abspath</value_translation> | |
22 </column> | |
23 </output> | |
24 </data_table> | |
25 <data_table name="snpeff_regulationdb"> <!-- Defines a Data Table to be modified. --> | |
26 <output> <!-- Handle the output of the Data Manager Tool --> | |
27 <column name="genome" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
28 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
29 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
30 </output> | |
31 </data_table> | |
32 <data_table name="snpeff_annotations"> <!-- Defines a Data Table to be modified. --> | |
33 <output> <!-- Handle the output of the Data Manager Tool --> | |
34 <column name="genome" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
35 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
36 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
37 </output> | |
38 </data_table> | |
39 </data_manager> | |
40 </data_managers> | |
41 | |
42 |