Mercurial > repos > iuc > snpeff
comparison snpeff_get_chr_names.xml @ 28:6322be79bd8e draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 4bc3ef84687aa6a39f79c2497a5800a9718825cd
| author | iuc |
|---|---|
| date | Sat, 28 Sep 2024 16:27:56 +0000 |
| parents | 74aebe30fb52 |
| children |
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| 27:9473cd297a76 | 28:6322be79bd8e |
|---|---|
| 48 </param> | 48 </param> |
| 49 </when> | 49 </when> |
| 50 <when value="history"> | 50 <when value="history"> |
| 51 <param name="snpeff_db" type="data" format="snpeffdb" label="@SNPEFF_VERSION@ Genome Data"> | 51 <param name="snpeff_db" type="data" format="snpeffdb" label="@SNPEFF_VERSION@ Genome Data"> |
| 52 <help>This can only be used on databases in your history that were downloaded using the snpEff download tool.</help> | 52 <help>This can only be used on databases in your history that were downloaded using the snpEff download tool.</help> |
| 53 <options options_filter_attribute="metadata.snpeff_version" > | |
| 54 <filter type="add_value" value="@SNPEFF_VERSION@" /> | |
| 55 </options> | |
| 56 <validator type="expression" message="This version of SnpEff will only work with @SNPEFF_VERSION@ genome databases">value is not None and value.metadata.snpeff_version == "@SNPEFF_VERSION@"</validator> | 53 <validator type="expression" message="This version of SnpEff will only work with @SNPEFF_VERSION@ genome databases">value is not None and value.metadata.snpeff_version == "@SNPEFF_VERSION@"</validator> |
| 57 </param> | 54 </param> |
| 58 </when> | 55 </when> |
| 59 <when value="named"> | 56 <when value="named"> |
| 60 <param name="genome_version" type="text" value="" label="Snpff Genome Version Name (e.g. GRCh38.86)"> | 57 <param name="genome_version" type="text" value="" label="Snpff Genome Version Name (e.g. GRCh38.86)"> |
| 63 </param> | 60 </param> |
| 64 </when> | 61 </when> |
| 65 <when value="custom"> | 62 <when value="custom"> |
| 66 <param name="snpeff_db" type="data" format="snpeffdb" label="@SNPEFF_VERSION@ Genome Data"> | 63 <param name="snpeff_db" type="data" format="snpeffdb" label="@SNPEFF_VERSION@ Genome Data"> |
| 67 <help>This can only be used on databases in your history that were created using the snpEff build tool.</help> | 64 <help>This can only be used on databases in your history that were created using the snpEff build tool.</help> |
| 68 <options options_filter_attribute="metadata.snpeff_version" > | |
| 69 <filter type="add_value" value="@SNPEFF_VERSION@" /> | |
| 70 </options> | |
| 71 <validator type="expression" message="This version of SnpEff will only work with @SNPEFF_VERSION@ genome databases">value is not None and value.metadata.snpeff_version == "@SNPEFF_VERSION@"</validator> | 65 <validator type="expression" message="This version of SnpEff will only work with @SNPEFF_VERSION@ genome databases">value is not None and value.metadata.snpeff_version == "@SNPEFF_VERSION@"</validator> |
| 72 </param> | 66 </param> |
| 73 </when> | 67 </when> |
| 74 </conditional> | 68 </conditional> |
| 75 </inputs> | 69 </inputs> |