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comparison test-data/input.vcf @ 29:ca2b512e8d7c draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 4cc10cfe702828a91ecf8bb58d3f84a36b0578f7
author iuc
date Mon, 21 Oct 2024 13:56:15 +0000
parents 7adfd0589f49
children
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28:6322be79bd8e 29:ca2b512e8d7c
1 ##fileformat=VCFv4.1 1 ##fileformat=VCFv4.1
2 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> 2 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
3 ##contig=<ID="KJ660346",length=18959> 3 ##contig=<ID="KJ660346",length=18959>
4 ##reference=http://www.ncbi.nlm.nih.gov/nuccore/KJ660346.2 4 ##reference=http://www.ncbi.nlm.nih.gov/nuccore/KJ660346.2
5 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT EBOV_2014_EM095 EBOV_2014_G3676 EBOV_2014_G3680 EBOV_2014_G3686 EBOV_2014_G3687 EBOV_2014_G3683 EBOV_2014_EM096 EBOV_2014_EM098 EBOV_2014_EM104 EBOV_2014_EM106 EBOV_2014_EM112 EBOV_2014_EM113 EBOV_2014_EM124 EBOV_2014_G3677 EBOV_2014_G3682 EBOV_2014_G3707 EBOV_2014_G3713 EBOV_2014_G3724 EBOV_2014_G3734 EBOV_2014_G3735 EBOV_2014_G3750 EBOV_2014_G3758 EBOV_2014_G3764 EBOV_2014_G3769 EBOV_2014_G3782 EBOV_2014_G3786 EBOV_2014_G3788 EBOV_2014_G3796 EBOV_2014_G3798 EBOV_2014_G3799 EBOV_2014_G3800 EBOV_2014_G3805 EBOV_2014_G3807 EBOV_2014_G3810 EBOV_2014_G3820 EBOV_2014_G3838 EBOV_2014_G3840 EBOV_2014_G3841 EBOV_2014_G3848 EBOV_2014_NM042 EBOV_2014_G3850 EBOV_2014_EM110 EBOV_2014_EM111 EBOV_2014_EM119 EBOV_2014_G3729 EBOV_2014_G3765 EBOV_2014_G3770 EBOV_2014_G3789 EBOV_2014_G3825 EBOV_2014_G3845 EBOV_2014_G3851 EBOV_2014_G3857 EBOV_2014_EM115 EBOV_2014_EM120 EBOV_2014_G3752 EBOV_2014_G3795 EBOV_2014_G3808 EBOV_2014_G3823 EBOV_2014_EM121 EBOV_2014_G3771 EBOV_2014_G3816 EBOV_2014_G3829 EBOV_2014_G3846 EBOV_2014_G3856 EBOV_2014_G3826 EBOV_2014_G3827 EBOV_2014_G3809 EBOV_2014_G3814 EBOV_2014_G3821 EBOV_2014_G3822 EBOV_2014_G3679 EBOV_2014_G3819 EBOV_2014_G3817 EBOV_2014_G3834 EBOV_2014_G3818 EBOV_2014_G3787 EBOV_2014_G3831 EBOV_2014_G3670 EBOV_2014_KJ660346 EBOV_2014_KJ660347 EBOV_2014_KJ660348 5 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT EBOV_2014_EM095 EBOV_2014_G3676
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43 KJ660346 11811 . T C . . . GT 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
44 KJ660346 11943 . G A . . . GT 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0
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48 KJ660346 13923 . T C . . . GT 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
49 KJ660346 14019 . T C . . . GT 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
50 KJ660346 14232 . C T . . . GT 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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52 KJ660346 15660 . C T . . . GT 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1
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54 KJ660346 16054 . T A . . . GT 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0
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57 KJ660346 17142 . T C . . . GT 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0
58 KJ660346 17985 . T C . . . GT 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
59 KJ660346 18412 . T C . . . GT 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
60 KJ660346 18895 . C T . . . GT 0 0 0 0 0 0 0 . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 . 0 0 0 0 0 0 0 0 . 0 0 0 0 . 0 . 0 0 0 . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 . 0 0 0 0 0 0 0 0 0 0 0 1 1 1