Mercurial > repos > iuc > snpeff

diff gbk2fa.py @ 15:479c4f2f4826 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 999eca8a05f17ae567f99b8ca3394f2105491173
author iuc
date Mon, 09 Jul 2018 13:22:58 -0400
parents 5b4ac70948d2
children cfcf33df7fc0
line wrap: on
line diff
--- a/gbk2fa.py	Tue Jun 12 17:31:21 2018 -0400
+++ b/gbk2fa.py	Mon Jul 09 13:22:58 2018 -0400
@@ -22,7 +22,7 @@
     f_type = magic.from_file(args.genbank_file, mime=True)
     if f_type == 'text/plain':
         input_handle = open(gbk_filename, "r")
-    elif f_type == 'application/gzip':
+    elif f_type == 'application/gzip' or f_type == 'application/x-gzip':
         input_handle = gzip.open(gbk_filename, "rt")
     elif f_type == 'application/x-bzip2':
         input_handle = bz2.open(gbk_filename, "rt")