Mercurial > repos > iuc > snpeff

diff snpEff_create_db.xml @ 12:5a29ab10dba6 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit a69e15a4016b3088ec937d6f2349be091c6b1b71
author iuc
date Thu, 29 Mar 2018 20:39:49 -0400
parents bfa6c1b8a03c
children f0ee2b470481
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line diff
--- a/snpEff_create_db.xml	Tue Mar 27 14:56:29 2018 -0400
+++ b/snpEff_create_db.xml	Thu Mar 29 20:39:49 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="snpEff_build_gb" name="SnpEff build:" version="@wrapper_version@.1">
+<tool id="snpEff_build_gb" name="SnpEff build:" version="@wrapper_version@.galaxy1">
     <description> database from Genbank record</description>
     <macros>
         <import>snpEff_macros.xml</import>
@@ -23,11 +23,11 @@
         #end if
 
         mkdir -p '${snpeff_output.files_path}'/'${genome_version}' &&
-        
+
         ln -s '${input_gbk}' '${snpeff_output.files_path}'/'${genome_version}'/genes.gbk &&
 
-        snpEff @java_options@ build -v 
-        -configOption '${genome_version}'.genome='${genome_version}' 
+        snpEff @java_options@ build -v
+        -configOption '${genome_version}'.genome='${genome_version}'
         -configOption '${genome_version}'.codonTable='${codon_table}'
         -genbank -dataDir '$snpeff_output.files_path' '$genome_version'