Mercurial > repos > iuc > snpeff

diff snpEff_databases.xml @ 4:698ef30638a8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 00efb7078cfb3664ef048925d0a6b02d8578c27d
author iuc
date Fri, 16 Sep 2016 13:06:42 -0400
parents b24873564cf6
children 7adfd0589f49
line wrap: on
line diff
--- a/snpEff_databases.xml	Tue Jun 07 10:03:17 2016 -0400
+++ b/snpEff_databases.xml	Fri Sep 16 13:06:42 2016 -0400
@@ -8,6 +8,7 @@
     <expand macro="version_command" />
     <command>
 <![CDATA[
+    @CONDA_SNPEFF_JAR_PATH@ &&
     java -jar "\$SNPEFF_JAR_PATH/snpEff.jar" databases |  grep -v '^---' | sed 's/^Genome/#Genome/' | sed  's/  *//g' > "$snpeff_dbs"
 ]]>
     </command>