Mercurial > repos > iuc > snpeff
diff snpeff_get_chr_names.xml @ 23:74aebe30fb52 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 67da1a478db26ad45f36a673218d526f8962d72f"
author | iuc |
---|---|
date | Sun, 19 Jan 2020 09:43:43 -0500 |
parents | 8f92c2b26e6d |
children | 6322be79bd8e |
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--- a/snpeff_get_chr_names.xml Fri Oct 18 06:12:18 2019 -0400 +++ b/snpeff_get_chr_names.xml Sun Jan 19 09:43:43 2020 -0500 @@ -1,14 +1,16 @@ -<tool id="snpEff_get_chr_names" name="SnpEff chromosome-info:" version="@WRAPPER_VERSION@.galaxy1"> +<tool id="snpEff_get_chr_names" name="SnpEff chromosome-info:" version="@WRAPPER_VERSION@.galaxy2"> <description>list chromosome names/lengths</description> <macros> <import>snpEff_macros.xml</import> </macros> <requirements> - <expand macro="requirement" /> + <expand macro="requirement"> + <requirement type="package" version="5.0.1">gawk</requirement> + </expand> </requirements> <expand macro="stdio" /> <expand macro="version_command" /> - <command><![CDATA[ + <command detect_errors="exit_code"><![CDATA[ snpEff @JAVA_OPTIONS@ dump #if $snpDb.genomeSrc == 'cached': -dataDir ${snpDb.genomeVersion.fields.path}