diff snpEff_macros.xml @ 29:ca2b512e8d7c draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 4cc10cfe702828a91ecf8bb58d3f84a36b0578f7

--- a/snpEff_macros.xml	Sat Sep 28 16:27:56 2024 +0000
+++ b/snpEff_macros.xml	Mon Oct 21 13:56:15 2024 +0000
@@ -1,6 +1,6 @@
 <macros>
     <xml name="requirement">
-        <requirement type="package" version="4.3.1t">snpeff</requirement>
+        <requirement type="package" version="5.2">snpeff</requirement>
         <yield/>
     </xml>
   <xml name="stdio">
@@ -14,9 +14,8 @@
 snpEff -version
     ]]></version_command>
   </xml>
-  <token name="@WRAPPER_VERSION@">4.3+T</token>
-  <token name="@SNPEFF_VERSION@">SnpEff4.3</token>
-  <token name="@SNPEFF_DATABASE_URL@">https://sourceforge.net/projects/snpeff/files/databases/v4_3/</token>
+  <token name="@WRAPPER_VERSION@">0</token>
+  <token name="@SNPEFF_VERSION@">5.2</token>
   <token name="@JAVA_OPTIONS@">-Xmx\${GALAXY_MEMORY_MB:-8192}m</token>
   <xml name="ref_select">
     <conditional name="reference_source">
@@ -59,7 +58,7 @@
 
 **Download pre-built databases**
 
-SnpEff project generates large numbers of pre-build databases. These are available at @SNPEFF_DATABASE_URL@ and can downloaded. Follow these steps:
+SnpEff project generates large numbers of pre-build databases. To obtain and use them follow these steps:
 
   #. Use **SnpEff databases** tool to generate a list of existing databases. Note the name of the database you need.
   #. Use **SnpEff download** tool to download the database.