Mercurial > repos > iuc > snpeff
view snpEff_download.xml @ 1:500832f27cbc draft
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author | iuc |
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date | Thu, 22 Jan 2015 08:28:37 -0500 |
parents | e8adfc4c0a6b |
children | b24873564cf6 |
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<tool id="snpEff_download" name="SnpEff Download" version="@WRAPPER_VERSION@.0"> <description>Download a new database</description> <expand macro="requirements" /> <macros> <import>snpEff_macros.xml</import> </macros> <command> <![CDATA[ java -jar \$SNPEFF_JAR_PATH/snpEff.jar download -c \$SNPEFF_JAR_PATH/snpEff.config -dataDir $snpeff_db.files_path -v $genome_version ]]> </command> <inputs> <param name="genome_version" type="text" size="40" value="" label="Select the genome version you want to download (e.g. GRCh37.74)"> <help>@SNPEFF_DATABASE_URL@</help> <validator type="regex" message="A genome version name is required">\S+</validator> </param> </inputs> <outputs> <data format="snpeffdb" name="snpeff_db" label="${tool.name} @SNPEFF_VERSION@ ${genome_version}" /> </outputs> <expand macro="stdio" /> <help> @EXTERNAL_DOCUMENTATION@ @CITATION_SECTION@ </help> <expand macro="citations" /> </tool>