view snpEff_databases.xml @ 7:7adfd0589f49 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 5c6d595ecbf2e4e39c25662a165c9e475e01ecd1

<tool id="snpEff_databases" name="SnpEff available databases" version="@WRAPPER_VERSION@.0">
    <description></description>
    <macros>
        <import>snpEff_macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <expand macro="version_command" />
    <command><![CDATA[
snpEff databases | grep -v '^---' | sed 's/^Genome/#Genome/' | sed 's/  *//g' > '$snpeff_dbs'
    ]]></command>
    <inputs>
    </inputs>
    <outputs>
        <data format="tabular" name="snpeff_dbs" label="${tool.name} @SNPEFF_VERSION@ available databases" />
    </outputs>
    <tests>
        <test>
            <output name="snpeff_dbs">
                <assert_contents>
                    <has_text text="ebola_zaire" />
                </assert_contents>
            </output>
        </test>
    </tests>
    <help><![CDATA[
@EXTERNAL_DOCUMENTATION@
    ]]></help>
    <expand macro="citations" />
</tool>