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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 280d5247becaa9a70db9c5c4a2f1fc50d302838a
| author | iuc |
|---|---|
| date | Mon, 18 Nov 2024 22:15:34 +0000 |
| parents | 5b4ac70948d2 |
| children |
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LOCUS LC129268 2808 bp DNA linear SYN 19-MAR-2016 DEFINITION Synthetic construct DNA, plasmid vector pUC18 including artificial sequence. ACCESSION LC129268 VERSION LC129268.1 KEYWORDS . SOURCE synthetic construct ORGANISM synthetic construct other sequences; artificial sequences. REFERENCE 1 AUTHORS Takahashi,M., Kita,Y., Mizuno,A. and Goto-Yamamoto,N. TITLE Evaluation of method bias in bacterial community analysis JOURNAL Unpublished REFERENCE 2 (bases 1 to 2808) AUTHORS Takahashi,M. and Goto-Yamamoto,N. TITLE Direct Submission JOURNAL Submitted (03-MAR-2016) Contact:Masayuki Takahashi National Research Institute of Brewing, Technology Development Research Division; 3-7-1 Kagamiyama, Higashi-hiroshima, Hiroshima 739-0046, Japan URL :http://www.nrib.go.jp/index.html FEATURES Location/Qualifiers source 1..2808 /organism="synthetic construct" /mol_type="other DNA" /db_xref="taxon:32630" /note="plasmid vector pUC18 including artificial sequence" misc_feature 439..560 /note="internal standard DNA for quantification of microbial rDNA using quantitative PCR" ORIGIN 1 tcgcgcgttt cggtgatgac ggtgaaaacc tctgacacat gcagctcccg gagacggtca 61 cagcttgtct gtaagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtg 121 ttggcgggtg tcggggctgg cttaactatg cggcatcaga gcagattgta ctgagagtgc 181 accatatgcg gtgtgaaata ccgcacagat gcgtaaggag aaaataccgc atcaggcgcc 241 attcgccatt caggctgcgc aactgttggg aagggcgatc ggtgcgggcc tcttcgctat 301 tacgccagct ggcgaaaggg ggatgtgctg caaggcgatt aagttgggta acgccagggt 361 tttcccagtc acgacgttgt aaaacgacgg ccagtgccaa gcttgcatgc ctgcaggtcg 421 actctagagg atccccggaa ctaatacgac tcactatagg gtccgatctt ccgaggtctc 481 atatcgatcg gtagggcatc taatggcttc ggagttcaag ggctatattc gccatgtcag 541 atttgtatgc caaaggccgg gtaccgagct cgaattcgta atcatggtca tagctgtttc 601 ctgtgtgaaa ttgttatccg ctcacaattc cacacaacat acgagccgga agcataaagt 661 gtaaagcctg gggtgcctaa tgagtgagct aactcacatt aattgcgttg cgctcactgc 721 ccgctttcca gtcgggaaac ctgtcgtgcc agctgcatta atgaatcggc caacgcgcgg 781 ggagaggcgg tttgcgtatt gggcgctctt ccgcttcctc gctcactgac tcgctgcgct 841 cggtcgttcg gctgcggcga gcggtatcag ctcactcaaa ggcggtaata cggttatcca 901 cagaatcagg ggataacgca ggaaagaaca tgtgagcaaa aggccagcaa aaggccagga 961 accgtaaaaa ggccgcgttg ctggcgtttt tccataggct ccgcccccct gacgagcatc 1021 acaaaaatcg acgctcaagt cagaggtggc gaaacccgac aggactataa agataccagg 1081 cgtttccccc tggaagctcc ctcgtgcgct ctcctgttcc gaccctgccg cttaccggat 1141 acctgtccgc ctttctccct tcgggaagcg tggcgctttc tcatagctca cgctgtaggt 1201 atctcagttc ggtgtaggtc gttcgctcca agctgggctg tgtgcacgaa ccccccgttc 1261 agcccgaccg ctgcgcctta tccggtaact atcgtcttga gtccaacccg gtaagacacg 1321 acttatcgcc actggcagca gccactggta acaggattag cagagcgagg tatgtaggcg 1381 gtgctacaga gttcttgaag tggtggccta actacggcta cactagaagg acagtatttg 1441 gtatctgcgc tctgctgaag ccagttacct tcggaaaaag agttggtagc tcttgatccg 1501 gcaaacaaac caccgctggt agcggtggtt tttttgtttg caagcagcag attacgcgca 1561 gaaaaaaagg atctcaagaa gatcctttga tcttttctac ggggtctgac gctcagtgga 1621 acgaaaactc acgttaaggg attttggtca tgagattatc aaaaaggatc ttcacctaga 1681 tccttttaaa ttaaaaatga agttttaaat caatctaaag tatatatgag taaacttggt 1741 ctgacagtta ccaatgctta atcagtgagg cacctatctc agcgatctgt ctatttcgtt 1801 catccatagt tgcctgactc cccgtcgtgt agataactac gatacgggag ggcttaccat 1861 ctggccccag tgctgcaatg ataccgcgag acccacgctc accggctcca gatttatcag 1921 caataaacca gccagccgga agggccgagc gcagaagtgg tcctgcaact ttatccgcct 1981 ccatccagtc tattaattgt tgccgggaag ctagagtaag tagttcgcca gttaatagtt 2041 tgcgcaacgt tgttgccatt gctacaggca tcgtggtgtc acgctcgtcg tttggtatgg 2101 cttcattcag ctccggttcc caacgatcaa ggcgagttac atgatccccc atgttgtgca 2161 aaaaagcggt tagctccttc ggtcctccga tcgttgtcag aagtaagttg gccgcagtgt 2221 tatcactcat ggttatggca gcactgcata attctcttac tgtcatgcca tccgtaagat 2281 gcttttctgt gactggtgag tactcaacca agtcattctg agaatagtgt atgcggcgac 2341 cgagttgctc ttgcccggcg tcaatacggg ataataccgc gccacatagc agaactttaa 2401 aagtgctcat cattggaaaa cgttcttcgg ggcgaaaact ctcaaggatc ttaccgctgt 2461 tgagatccag ttcgatgtaa cccactcgtg cacccaactg atcttcagca tcttttactt 2521 tcaccagcgt ttctgggtga gcaaaaacag gaaggcaaaa tgccgcaaaa aagggaataa 2581 gggcgacacg gaaatgttga atactcatac tcttcctttt tcaatattat tgaagcattt 2641 atcagggtta ttgtctcatg agcggataca tatttgaatg tatttagaaa aataaacaaa 2701 taggggttcc gcgcacattt ccccgaaaag tgccacctga cgtctaagaa accattatta 2761 tcatgacatt aacctataaa aataggcgta tcacgaggcc ctttcgtc //