# HG changeset patch
# User iuc
# Date 1571163174 14400
# Node ID de67e5082c48e12a55210aec42296e3b677472ef
# Parent  8f92c2b26e6d6dc7dd1129a93a7a6e2ac24ed3d8
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit aeb660e92b9eb60dc5f90a2078f552018cca96e0"

diff -r 8f92c2b26e6d -r de67e5082c48 snpEff_create_db.xml
--- a/snpEff_create_db.xml	Fri Jan 25 12:29:48 2019 -0500
+++ b/snpEff_create_db.xml	Tue Oct 15 14:12:54 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="snpEff_build_gb" name="SnpEff build:" version="@WRAPPER_VERSION@.galaxy3">
+<tool id="snpEff_build_gb" name="SnpEff build:" version="@WRAPPER_VERSION@.galaxy4">
     <description> database from Genbank or GFF record</description>
     <macros>
         <import>snpEff_macros.xml</import>
@@ -32,12 +32,27 @@
                 ln -s '${input_type.input_gbk}' '${snpeff_output.files_path}'/'${genome_version}'/genes.gbk.gz &&
             #end if
         #elif str( $input_type.input_type_selector ) == "gff":
-            #if $input_type.input_fasta.is_of_type("fasta"):
-                ln -s '${input_type.input_fasta}' '${snpeff_output.files_path}'/'${genome_version}'/sequences.fa &&
-            #elif $input_type.input_fasta.is_of_type("fasta.gz"):
-                ln -s '${input_type.input_fasta}' '${snpeff_output.files_path}'/'${genome_version}'/sequences.fa.gz &&
-            #end if
+	        #if $input_type.reference_source.reference_source_selector == "history":
+			  #if $input_type.reference_source.input_fasta.is_of_type("fasta"):
+                ln -s '${input_type.reference_source.input_fasta}' '${snpeff_output.files_path}'/'${genome_version}'/sequences.fa &&
+	            #elif $input_type.reference_source.input_fasta.is_of_type("fasta.gz"):
+	                ln -s '${input_type.reference_source.input_fasta}' '${snpeff_output.files_path}'/'${genome_version}'/sequences.fa.gz &&
+	            #end if
+			#elif $input_type.reference_source.reference_source_selector == "cached":
+			  ln -s '${input_type.reference_source.ref_file.fields.path}' '${snpeff_output.files_path}'/'${genome_version}'/sequences.fa &&
+			#end if
             ln -s '${input_type.input_gff}' '${snpeff_output.files_path}'/'${genome_version}'/genes.gff &&
+        #elif str( $input_type.input_type_selector ) == "gtf":
+	        #if $input_type.reference_source.reference_source_selector == "history":
+			  #if $input_type.reference_source.input_fasta.is_of_type("fasta"):
+                ln -s '${input_type.reference_source.input_fasta}' '${snpeff_output.files_path}'/'${genome_version}'/sequences.fa &&
+	            #elif $input_type.reference_source.input_fasta.is_of_type("fasta.gz"):
+	                ln -s '${input_type.reference_source.input_fasta}' '${snpeff_output.files_path}'/'${genome_version}'/sequences.fa.gz &&
+	            #end if
+			#elif $input_type.reference_source.reference_source_selector == "cached":
+			  ln -s '${input_type.reference_source.ref_file.fields.path}' '${snpeff_output.files_path}'/'${genome_version}'/sequences.fa &&
+			#end if
+            ln -s '${input_type.input_gtf}' '${snpeff_output.files_path}'/'${genome_version}'/genes.gtf &&
         #end if
 
         snpEff @JAVA_OPTIONS@ build -v
@@ -47,6 +62,8 @@
             -genbank
         #elif str( $input_type.input_type_selector ) == "gff":
             -gff3
+        #elif str( $input_type.input_type_selector ) == "gtf":
+            -gtf22
         #end if
         -dataDir '${snpeff_output.files_path}' '${genome_version}' &&
         echo "${genome_version}.genome : ${genome_version}" >> '${snpeff_output.files_path}'/snpEff.config &&
@@ -61,6 +78,7 @@
             <param name="input_type_selector" type="select" display="radio" label="Input annotations are in" help="Specify format for annotations you are using to create SnpEff database">
                 <option value="gb" selected="true">GenBank</option>
                 <option value="gff">GFF</option>
+                <option value="gtf">GTF</option>
             </param>
             <when value="gb">
                 <param name="input_gbk" type="data" format="genbank,genbank.gz" label="Genbank dataset to build database from" help="This Genbank file will be used to generate snpEff database"/>
@@ -72,7 +90,37 @@
             </when>
             <when value="gff">
                 <param name="input_gff" type="data" format="gff3" label="GFF dataset to build database from" help="This GFF file will be used to generate snpEff database"/>
-                <param name="input_fasta" type="data" format="fasta,fasta.gz" label="Genome in FASTA format" help="This dataset is required for generating SnpEff database. See help section below."/>
+                <conditional name="reference_source">
+		            <param name="reference_source_selector" type="select" label="Choose the source for the reference genome">
+		                <option value="cached">Locally cached</option>
+		                <option value="history">History</option>
+		            </param>
+		            <when value="cached">
+		                <param name="ref_file" type="select" label="Select reference genome">
+		                    <options from_data_table="fasta_indexes"/>
+		                </param>
+		            </when>
+		            <when value="history"> 
+		                <param name="input_fasta" type="data" format="fasta,fasta.gz" label="Genome in FASTA format" help="This dataset is required for generating SnpEff database. See help section below."/>
+		            </when>
+		        </conditional>
+            </when>
+            <when value="gtf">
+                <param name="input_gtf" type="data" format="gtf" label="GTF dataset to build database from" help="This GTF file will be used to generate snpEff database"/>
+                <conditional name="reference_source">
+		            <param name="reference_source_selector" type="select" label="Choose the source for the reference genome">
+		                <option value="cached">Locally cached</option>
+		                <option value="history">History</option>
+		            </param>
+		            <when value="cached">
+		                <param name="ref_file" type="select" label="Select reference genome">
+		                    <options from_data_table="fasta_indexes"/>
+		                </param>
+		            </when>
+		            <when value="history"> 
+		                <param name="input_fasta" type="data" format="fasta,fasta.gz" label="Genome in FASTA format" help="This dataset is required for generating SnpEff database. See help section below."/>
+		            </when>
+		        </conditional>
             </when>
         </conditional>
         <param name="codon_table" type="select" label="Select genetic code for this sequence" help="If this sequence uses non-standard genetic code, select one from these options">
@@ -136,6 +184,7 @@
         <test>
             <param name="genome_version" value="pBR322"/>
             <param name="input_type_selector" value="gff"/>
+            <param name="reference_source_selector" value="history"/>
             <param name="input_fasta" value="pBR322_test2.fna" />
             <param name="input_gff" value="pBR322.gff3" />
             <output name="snpeff_output">
@@ -147,6 +196,7 @@
         <test>
             <param name="genome_version" value="pBR322"/>
             <param name="input_type_selector" value="gff"/>
+            <param name="reference_source_selector" value="history"/>
             <param name="input_fasta" value="pBR322_test2.fna.gz" />
             <param name="input_gff" value="pBR322.gff3" />
             <output name="snpeff_output">
@@ -155,6 +205,18 @@
                 </assert_contents>
             </output>
         </test>
+        <test>
+            <param name="genome_version" value="Saccharomyces_mito"/>
+            <param name="input_type_selector" value="gtf"/>
+            <param name="reference_source_selector" value="history"/>
+            <param name="input_fasta" value="Saccharomyces_mito.fa.gz" />
+            <param name="input_gtf" value="Saccharomyces_mito.gtf" />
+            <output name="snpeff_output">
+                <assert_contents>
+                    <has_text text="Saccharomyces_mito" />
+                </assert_contents>
+            </output>
+        </test>
     </tests>
     <help><![CDATA[
 **What it does**
diff -r 8f92c2b26e6d -r de67e5082c48 test-data/Saccharomyces_mito.fa.gz
Binary file test-data/Saccharomyces_mito.fa.gz has changed
diff -r 8f92c2b26e6d -r de67e5082c48 test-data/Saccharomyces_mito.gtf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Saccharomyces_mito.gtf	Tue Oct 15 14:12:54 2019 -0400
@@ -0,0 +1,312 @@
+Mito	sgd	gene	731	802	.	+	.	gene_id "tP(UGG)Q"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	731	802	.	+	.	gene_id "tP(UGG)Q"; transcript_id "tP(UGG)Q_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	731	802	.	+	.	gene_id "tP(UGG)Q"; transcript_id "tP(UGG)Q_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tP(UGG)Q_tRNA-E1";
+Mito	sgd	gene	3952	4338	.	+	.	gene_id "Q0010"; gene_name "Q0010"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	3952	4338	.	+	.	gene_id "Q0010"; transcript_id "Q0010_mRNA"; gene_name "Q0010"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	3952	4338	.	+	.	gene_id "Q0010"; transcript_id "Q0010_mRNA"; exon_number "1"; gene_name "Q0010"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0010_mRNA-E1";
+Mito	sgd	CDS	3952	4335	.	+	0	gene_id "Q0010"; transcript_id "Q0010_mRNA"; exon_number "1"; gene_name "Q0010"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0010";
+Mito	sgd	start_codon	3952	3954	.	+	0	gene_id "Q0010"; transcript_id "Q0010_mRNA"; exon_number "1"; gene_name "Q0010"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	stop_codon	4336	4338	.	+	0	gene_id "Q0010"; transcript_id "Q0010_mRNA"; exon_number "1"; gene_name "Q0010"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	4254	4415	.	+	.	gene_id "Q0017"; gene_name "Q0017"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	4254	4415	.	+	.	gene_id "Q0017"; transcript_id "Q0017_mRNA"; gene_name "Q0017"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	4254	4415	.	+	.	gene_id "Q0017"; transcript_id "Q0017_mRNA"; exon_number "1"; gene_name "Q0017"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0017_mRNA-E1";
+Mito	sgd	CDS	4254	4412	.	+	0	gene_id "Q0017"; transcript_id "Q0017_mRNA"; exon_number "1"; gene_name "Q0017"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0017";
+Mito	sgd	start_codon	4254	4256	.	+	0	gene_id "Q0017"; transcript_id "Q0017_mRNA"; exon_number "1"; gene_name "Q0017"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	stop_codon	4413	4415	.	+	0	gene_id "Q0017"; transcript_id "Q0017_mRNA"; exon_number "1"; gene_name "Q0017"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	6546	8194	.	+	.	gene_id "Q0020"; gene_name "15S_RRNA"; gene_source "sgd"; gene_biotype "rRNA";
+Mito	sgd	transcript	6546	8194	.	+	.	gene_id "Q0020"; transcript_id "Q0020_rRNA"; gene_name "15S_RRNA"; gene_source "sgd"; gene_biotype "rRNA"; transcript_source "sgd"; transcript_biotype "rRNA";
+Mito	sgd	exon	6546	8194	.	+	.	gene_id "Q0020"; transcript_id "Q0020_rRNA"; exon_number "1"; gene_name "15S_RRNA"; gene_source "sgd"; gene_biotype "rRNA"; transcript_source "sgd"; transcript_biotype "rRNA"; exon_id "Q0020_rRNA-E1";
+Mito	sgd	gene	9374	9447	.	+	.	gene_id "tW(UCA)Q"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	9374	9447	.	+	.	gene_id "tW(UCA)Q"; transcript_id "tW(UCA)Q_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	9374	9447	.	+	.	gene_id "tW(UCA)Q"; transcript_id "tW(UCA)Q_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tW(UCA)Q_tRNA-E1";
+Mito	sgd	gene	11667	11957	.	+	.	gene_id "Q0032"; gene_name "Q0032"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	11667	11957	.	+	.	gene_id "Q0032"; transcript_id "Q0032_mRNA"; gene_name "Q0032"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	11667	11957	.	+	.	gene_id "Q0032"; transcript_id "Q0032_mRNA"; exon_number "1"; gene_name "Q0032"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0032_mRNA-E1";
+Mito	sgd	CDS	11667	11954	.	+	0	gene_id "Q0032"; transcript_id "Q0032_mRNA"; exon_number "1"; gene_name "Q0032"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0032";
+Mito	sgd	start_codon	11667	11669	.	+	0	gene_id "Q0032"; transcript_id "Q0032_mRNA"; exon_number "1"; gene_name "Q0032"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	stop_codon	11955	11957	.	+	0	gene_id "Q0032"; transcript_id "Q0032_mRNA"; exon_number "1"; gene_name "Q0032"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	13818	26701	.	+	.	gene_id "Q0045"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	13818	26701	.	+	.	gene_id "Q0045"; transcript_id "Q0045_mRNA"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	13818	13986	.	+	.	gene_id "Q0045"; transcript_id "Q0045_mRNA"; exon_number "1"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0045_mRNA-E1";
+Mito	sgd	CDS	13818	13986	.	+	0	gene_id "Q0045"; transcript_id "Q0045_mRNA"; exon_number "1"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0045";
+Mito	sgd	start_codon	13818	13820	.	+	0	gene_id "Q0045"; transcript_id "Q0045_mRNA"; exon_number "1"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	16435	16470	.	+	.	gene_id "Q0045"; transcript_id "Q0045_mRNA"; exon_number "2"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0045_mRNA-E2";
+Mito	sgd	CDS	16435	16470	.	+	2	gene_id "Q0045"; transcript_id "Q0045_mRNA"; exon_number "2"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0045";
+Mito	sgd	exon	18954	18991	.	+	.	gene_id "Q0045"; transcript_id "Q0045_mRNA"; exon_number "3"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0045_mRNA-E3";
+Mito	sgd	CDS	18954	18991	.	+	2	gene_id "Q0045"; transcript_id "Q0045_mRNA"; exon_number "3"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0045";
+Mito	sgd	exon	20508	20984	.	+	.	gene_id "Q0045"; transcript_id "Q0045_mRNA"; exon_number "4"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0045_mRNA-E4";
+Mito	sgd	CDS	20508	20984	.	+	0	gene_id "Q0045"; transcript_id "Q0045_mRNA"; exon_number "4"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0045";
+Mito	sgd	exon	21995	22246	.	+	.	gene_id "Q0045"; transcript_id "Q0045_mRNA"; exon_number "5"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0045_mRNA-E5";
+Mito	sgd	CDS	21995	22246	.	+	0	gene_id "Q0045"; transcript_id "Q0045_mRNA"; exon_number "5"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0045";
+Mito	sgd	exon	23612	23746	.	+	.	gene_id "Q0045"; transcript_id "Q0045_mRNA"; exon_number "6"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0045_mRNA-E6";
+Mito	sgd	CDS	23612	23746	.	+	0	gene_id "Q0045"; transcript_id "Q0045_mRNA"; exon_number "6"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0045";
+Mito	sgd	exon	25318	25342	.	+	.	gene_id "Q0045"; transcript_id "Q0045_mRNA"; exon_number "7"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0045_mRNA-E7";
+Mito	sgd	CDS	25318	25342	.	+	0	gene_id "Q0045"; transcript_id "Q0045_mRNA"; exon_number "7"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0045";
+Mito	sgd	exon	26229	26701	.	+	.	gene_id "Q0045"; transcript_id "Q0045_mRNA"; exon_number "8"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0045_mRNA-E8";
+Mito	sgd	CDS	26229	26698	.	+	2	gene_id "Q0045"; transcript_id "Q0045_mRNA"; exon_number "8"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0045";
+Mito	sgd	stop_codon	26699	26701	.	+	0	gene_id "Q0045"; transcript_id "Q0045_mRNA"; exon_number "8"; gene_name "COX1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	13818	19996	.	+	.	gene_id "Q0060"; gene_name "AI3"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	13818	19996	.	+	.	gene_id "Q0060"; transcript_id "Q0060_mRNA"; gene_name "AI3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	13818	13986	.	+	.	gene_id "Q0060"; transcript_id "Q0060_mRNA"; exon_number "1"; gene_name "AI3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0060_mRNA-E1";
+Mito	sgd	CDS	13818	13986	.	+	0	gene_id "Q0060"; transcript_id "Q0060_mRNA"; exon_number "1"; gene_name "AI3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0060";
+Mito	sgd	start_codon	13818	13820	.	+	0	gene_id "Q0060"; transcript_id "Q0060_mRNA"; exon_number "1"; gene_name "AI3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	16435	16470	.	+	.	gene_id "Q0060"; transcript_id "Q0060_mRNA"; exon_number "2"; gene_name "AI3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0060_mRNA-E2";
+Mito	sgd	CDS	16435	16470	.	+	2	gene_id "Q0060"; transcript_id "Q0060_mRNA"; exon_number "2"; gene_name "AI3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0060";
+Mito	sgd	exon	18954	19996	.	+	.	gene_id "Q0060"; transcript_id "Q0060_mRNA"; exon_number "3"; gene_name "AI3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0060_mRNA-E3";
+Mito	sgd	CDS	18954	19993	.	+	2	gene_id "Q0060"; transcript_id "Q0060_mRNA"; exon_number "3"; gene_name "AI3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0060";
+Mito	sgd	stop_codon	19994	19996	.	+	0	gene_id "Q0060"; transcript_id "Q0060_mRNA"; exon_number "3"; gene_name "AI3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	13818	16322	.	+	.	gene_id "Q0050"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	13818	16322	.	+	.	gene_id "Q0050"; transcript_id "Q0050_mRNA"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	13818	16322	.	+	.	gene_id "Q0050"; transcript_id "Q0050_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0050_mRNA-E1";
+Mito	sgd	CDS	13818	16319	.	+	0	gene_id "Q0050"; transcript_id "Q0050_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0050";
+Mito	sgd	start_codon	13818	13820	.	+	0	gene_id "Q0050"; transcript_id "Q0050_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	stop_codon	16320	16322	.	+	0	gene_id "Q0050"; transcript_id "Q0050_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	13818	18830	.	+	.	gene_id "Q0055"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	13818	18830	.	+	.	gene_id "Q0055"; transcript_id "Q0055_mRNA"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	13818	13986	.	+	.	gene_id "Q0055"; transcript_id "Q0055_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0055_mRNA-E1";
+Mito	sgd	CDS	13818	13986	.	+	0	gene_id "Q0055"; transcript_id "Q0055_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0055";
+Mito	sgd	start_codon	13818	13820	.	+	0	gene_id "Q0055"; transcript_id "Q0055_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	16435	18830	.	+	.	gene_id "Q0055"; transcript_id "Q0055_mRNA"; exon_number "2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0055_mRNA-E2";
+Mito	sgd	CDS	16435	18827	.	+	2	gene_id "Q0055"; transcript_id "Q0055_mRNA"; exon_number "2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0055";
+Mito	sgd	stop_codon	18828	18830	.	+	0	gene_id "Q0055"; transcript_id "Q0055_mRNA"; exon_number "2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	13818	23167	.	+	.	gene_id "Q0070"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	13818	23167	.	+	.	gene_id "Q0070"; transcript_id "Q0070_mRNA"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	13818	13986	.	+	.	gene_id "Q0070"; transcript_id "Q0070_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0070_mRNA-E1";
+Mito	sgd	CDS	13818	13986	.	+	0	gene_id "Q0070"; transcript_id "Q0070_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0070";
+Mito	sgd	start_codon	13818	13820	.	+	0	gene_id "Q0070"; transcript_id "Q0070_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	16435	16470	.	+	.	gene_id "Q0070"; transcript_id "Q0070_mRNA"; exon_number "2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0070_mRNA-E2";
+Mito	sgd	CDS	16435	16470	.	+	2	gene_id "Q0070"; transcript_id "Q0070_mRNA"; exon_number "2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0070";
+Mito	sgd	exon	18954	18991	.	+	.	gene_id "Q0070"; transcript_id "Q0070_mRNA"; exon_number "3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0070_mRNA-E3";
+Mito	sgd	CDS	18954	18991	.	+	2	gene_id "Q0070"; transcript_id "Q0070_mRNA"; exon_number "3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0070";
+Mito	sgd	exon	20508	20984	.	+	.	gene_id "Q0070"; transcript_id "Q0070_mRNA"; exon_number "4"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0070_mRNA-E4";
+Mito	sgd	CDS	20508	20984	.	+	0	gene_id "Q0070"; transcript_id "Q0070_mRNA"; exon_number "4"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0070";
+Mito	sgd	exon	21995	23167	.	+	.	gene_id "Q0070"; transcript_id "Q0070_mRNA"; exon_number "5"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0070_mRNA-E5";
+Mito	sgd	CDS	21995	23164	.	+	0	gene_id "Q0070"; transcript_id "Q0070_mRNA"; exon_number "5"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0070";
+Mito	sgd	stop_codon	23165	23167	.	+	0	gene_id "Q0070"; transcript_id "Q0070_mRNA"; exon_number "5"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	13818	21935	.	+	.	gene_id "Q0065"; gene_name "AI4"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	13818	21935	.	+	.	gene_id "Q0065"; transcript_id "Q0065_mRNA"; gene_name "AI4"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	13818	13986	.	+	.	gene_id "Q0065"; transcript_id "Q0065_mRNA"; exon_number "1"; gene_name "AI4"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0065_mRNA-E1";
+Mito	sgd	CDS	13818	13986	.	+	0	gene_id "Q0065"; transcript_id "Q0065_mRNA"; exon_number "1"; gene_name "AI4"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0065";
+Mito	sgd	start_codon	13818	13820	.	+	0	gene_id "Q0065"; transcript_id "Q0065_mRNA"; exon_number "1"; gene_name "AI4"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	16435	16470	.	+	.	gene_id "Q0065"; transcript_id "Q0065_mRNA"; exon_number "2"; gene_name "AI4"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0065_mRNA-E2";
+Mito	sgd	CDS	16435	16470	.	+	2	gene_id "Q0065"; transcript_id "Q0065_mRNA"; exon_number "2"; gene_name "AI4"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0065";
+Mito	sgd	exon	18954	18991	.	+	.	gene_id "Q0065"; transcript_id "Q0065_mRNA"; exon_number "3"; gene_name "AI4"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0065_mRNA-E3";
+Mito	sgd	CDS	18954	18991	.	+	2	gene_id "Q0065"; transcript_id "Q0065_mRNA"; exon_number "3"; gene_name "AI4"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0065";
+Mito	sgd	exon	20508	21935	.	+	.	gene_id "Q0065"; transcript_id "Q0065_mRNA"; exon_number "4"; gene_name "AI4"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0065_mRNA-E4";
+Mito	sgd	CDS	20508	21932	.	+	0	gene_id "Q0065"; transcript_id "Q0065_mRNA"; exon_number "4"; gene_name "AI4"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0065";
+Mito	sgd	stop_codon	21933	21935	.	+	0	gene_id "Q0065"; transcript_id "Q0065_mRNA"; exon_number "4"; gene_name "AI4"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	24156	25255	.	+	.	gene_id "Q0075"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	24156	25255	.	+	.	gene_id "Q0075"; transcript_id "Q0075_mRNA"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	24156	24870	.	+	.	gene_id "Q0075"; transcript_id "Q0075_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0075_mRNA-E1";
+Mito	sgd	CDS	24156	24870	.	+	0	gene_id "Q0075"; transcript_id "Q0075_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0075";
+Mito	sgd	start_codon	24156	24158	.	+	0	gene_id "Q0075"; transcript_id "Q0075_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	24906	25255	.	+	.	gene_id "Q0075"; transcript_id "Q0075_mRNA"; exon_number "2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0075_mRNA-E2";
+Mito	sgd	CDS	24906	25252	.	+	2	gene_id "Q0075"; transcript_id "Q0075_mRNA"; exon_number "2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0075";
+Mito	sgd	stop_codon	25253	25255	.	+	0	gene_id "Q0075"; transcript_id "Q0075_mRNA"; exon_number "2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	27666	27812	.	+	.	gene_id "Q0080"; gene_name "ATP8"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	27666	27812	.	+	.	gene_id "Q0080"; transcript_id "Q0080_mRNA"; gene_name "ATP8"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	27666	27812	.	+	.	gene_id "Q0080"; transcript_id "Q0080_mRNA"; exon_number "1"; gene_name "ATP8"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0080_mRNA-E1";
+Mito	sgd	CDS	27666	27809	.	+	0	gene_id "Q0080"; transcript_id "Q0080_mRNA"; exon_number "1"; gene_name "ATP8"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0080";
+Mito	sgd	start_codon	27666	27668	.	+	0	gene_id "Q0080"; transcript_id "Q0080_mRNA"; exon_number "1"; gene_name "ATP8"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	stop_codon	27810	27812	.	+	0	gene_id "Q0080"; transcript_id "Q0080_mRNA"; exon_number "1"; gene_name "ATP8"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	28487	29266	.	+	.	gene_id "Q0085"; gene_name "ATP6"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	28487	29266	.	+	.	gene_id "Q0085"; transcript_id "Q0085_mRNA"; gene_name "ATP6"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	28487	29266	.	+	.	gene_id "Q0085"; transcript_id "Q0085_mRNA"; exon_number "1"; gene_name "ATP6"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0085_mRNA-E1";
+Mito	sgd	CDS	28487	29263	.	+	0	gene_id "Q0085"; transcript_id "Q0085_mRNA"; exon_number "1"; gene_name "ATP6"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0085";
+Mito	sgd	start_codon	28487	28489	.	+	0	gene_id "Q0085"; transcript_id "Q0085_mRNA"; exon_number "1"; gene_name "ATP6"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	stop_codon	29264	29266	.	+	0	gene_id "Q0085"; transcript_id "Q0085_mRNA"; exon_number "1"; gene_name "ATP6"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	30874	31014	.	+	.	gene_id "Q0092"; gene_name "Q0092"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	30874	31014	.	+	.	gene_id "Q0092"; transcript_id "Q0092_mRNA"; gene_name "Q0092"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	30874	31014	.	+	.	gene_id "Q0092"; transcript_id "Q0092_mRNA"; exon_number "1"; gene_name "Q0092"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0092_mRNA-E1";
+Mito	sgd	CDS	30874	31011	.	+	0	gene_id "Q0092"; transcript_id "Q0092_mRNA"; exon_number "1"; gene_name "Q0092"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0092";
+Mito	sgd	start_codon	30874	30876	.	+	0	gene_id "Q0092"; transcript_id "Q0092_mRNA"; exon_number "1"; gene_name "Q0092"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	stop_codon	31012	31014	.	+	0	gene_id "Q0092"; transcript_id "Q0092_mRNA"; exon_number "1"; gene_name "Q0092"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	35373	35444	.	+	.	gene_id "tE(UUC)Q"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	35373	35444	.	+	.	gene_id "tE(UUC)Q"; transcript_id "tE(UUC)Q_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	35373	35444	.	+	.	gene_id "tE(UUC)Q"; transcript_id "tE(UUC)Q_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tE(UUC)Q_tRNA-E1";
+Mito	sgd	gene	36540	42251	.	+	.	gene_id "Q0120"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	36540	42251	.	+	.	gene_id "Q0120"; transcript_id "Q0120_mRNA"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	36540	36954	.	+	.	gene_id "Q0120"; transcript_id "Q0120_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0120_mRNA-E1";
+Mito	sgd	CDS	36540	36954	.	+	0	gene_id "Q0120"; transcript_id "Q0120_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0120";
+Mito	sgd	start_codon	36540	36542	.	+	0	gene_id "Q0120"; transcript_id "Q0120_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	37723	37736	.	+	.	gene_id "Q0120"; transcript_id "Q0120_mRNA"; exon_number "2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0120_mRNA-E2";
+Mito	sgd	CDS	37723	37736	.	+	2	gene_id "Q0120"; transcript_id "Q0120_mRNA"; exon_number "2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0120";
+Mito	sgd	exon	39141	39217	.	+	.	gene_id "Q0120"; transcript_id "Q0120_mRNA"; exon_number "3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0120_mRNA-E3";
+Mito	sgd	CDS	39141	39217	.	+	0	gene_id "Q0120"; transcript_id "Q0120_mRNA"; exon_number "3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0120";
+Mito	sgd	exon	40841	42251	.	+	.	gene_id "Q0120"; transcript_id "Q0120_mRNA"; exon_number "4"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0120_mRNA-E4";
+Mito	sgd	CDS	40841	42248	.	+	1	gene_id "Q0120"; transcript_id "Q0120_mRNA"; exon_number "4"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0120";
+Mito	sgd	stop_codon	42249	42251	.	+	0	gene_id "Q0120"; transcript_id "Q0120_mRNA"; exon_number "4"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	36540	38579	.	+	.	gene_id "Q0110"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	36540	38579	.	+	.	gene_id "Q0110"; transcript_id "Q0110_mRNA"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	36540	36954	.	+	.	gene_id "Q0110"; transcript_id "Q0110_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0110_mRNA-E1";
+Mito	sgd	CDS	36540	36954	.	+	0	gene_id "Q0110"; transcript_id "Q0110_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0110";
+Mito	sgd	start_codon	36540	36542	.	+	0	gene_id "Q0110"; transcript_id "Q0110_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	37723	38579	.	+	.	gene_id "Q0110"; transcript_id "Q0110_mRNA"; exon_number "2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0110_mRNA-E2";
+Mito	sgd	CDS	37723	38576	.	+	2	gene_id "Q0110"; transcript_id "Q0110_mRNA"; exon_number "2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0110";
+Mito	sgd	stop_codon	38577	38579	.	+	0	gene_id "Q0110"; transcript_id "Q0110_mRNA"; exon_number "2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	36540	40265	.	+	.	gene_id "Q0115"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	36540	40265	.	+	.	gene_id "Q0115"; transcript_id "Q0115_mRNA"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	36540	36954	.	+	.	gene_id "Q0115"; transcript_id "Q0115_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0115_mRNA-E1";
+Mito	sgd	CDS	36540	36954	.	+	0	gene_id "Q0115"; transcript_id "Q0115_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0115";
+Mito	sgd	start_codon	36540	36542	.	+	0	gene_id "Q0115"; transcript_id "Q0115_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	37723	37736	.	+	.	gene_id "Q0115"; transcript_id "Q0115_mRNA"; exon_number "2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0115_mRNA-E2";
+Mito	sgd	CDS	37723	37736	.	+	2	gene_id "Q0115"; transcript_id "Q0115_mRNA"; exon_number "2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0115";
+Mito	sgd	exon	39141	40265	.	+	.	gene_id "Q0115"; transcript_id "Q0115_mRNA"; exon_number "3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0115_mRNA-E3";
+Mito	sgd	CDS	39141	40262	.	+	0	gene_id "Q0115"; transcript_id "Q0115_mRNA"; exon_number "3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0115";
+Mito	sgd	stop_codon	40263	40265	.	+	0	gene_id "Q0115"; transcript_id "Q0115_mRNA"; exon_number "3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	36540	43647	.	+	.	gene_id "Q0105"; gene_name "COB"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	36540	43647	.	+	.	gene_id "Q0105"; transcript_id "Q0105_mRNA"; gene_name "COB"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	36540	36954	.	+	.	gene_id "Q0105"; transcript_id "Q0105_mRNA"; exon_number "1"; gene_name "COB"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0105_mRNA-E1";
+Mito	sgd	CDS	36540	36954	.	+	0	gene_id "Q0105"; transcript_id "Q0105_mRNA"; exon_number "1"; gene_name "COB"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0105";
+Mito	sgd	start_codon	36540	36542	.	+	0	gene_id "Q0105"; transcript_id "Q0105_mRNA"; exon_number "1"; gene_name "COB"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	37723	37736	.	+	.	gene_id "Q0105"; transcript_id "Q0105_mRNA"; exon_number "2"; gene_name "COB"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0105_mRNA-E2";
+Mito	sgd	CDS	37723	37736	.	+	2	gene_id "Q0105"; transcript_id "Q0105_mRNA"; exon_number "2"; gene_name "COB"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0105";
+Mito	sgd	exon	39141	39217	.	+	.	gene_id "Q0105"; transcript_id "Q0105_mRNA"; exon_number "3"; gene_name "COB"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0105_mRNA-E3";
+Mito	sgd	CDS	39141	39217	.	+	0	gene_id "Q0105"; transcript_id "Q0105_mRNA"; exon_number "3"; gene_name "COB"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0105";
+Mito	sgd	exon	40841	41090	.	+	.	gene_id "Q0105"; transcript_id "Q0105_mRNA"; exon_number "4"; gene_name "COB"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0105_mRNA-E4";
+Mito	sgd	CDS	40841	41090	.	+	1	gene_id "Q0105"; transcript_id "Q0105_mRNA"; exon_number "4"; gene_name "COB"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0105";
+Mito	sgd	exon	42508	42558	.	+	.	gene_id "Q0105"; transcript_id "Q0105_mRNA"; exon_number "5"; gene_name "COB"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0105_mRNA-E5";
+Mito	sgd	CDS	42508	42558	.	+	0	gene_id "Q0105"; transcript_id "Q0105_mRNA"; exon_number "5"; gene_name "COB"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0105";
+Mito	sgd	exon	43297	43647	.	+	.	gene_id "Q0105"; transcript_id "Q0105_mRNA"; exon_number "6"; gene_name "COB"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0105_mRNA-E6";
+Mito	sgd	CDS	43297	43644	.	+	0	gene_id "Q0105"; transcript_id "Q0105_mRNA"; exon_number "6"; gene_name "COB"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0105";
+Mito	sgd	stop_codon	43645	43647	.	+	0	gene_id "Q0105"; transcript_id "Q0105_mRNA"; exon_number "6"; gene_name "COB"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	46723	46953	.	+	.	gene_id "Q0130"; gene_name "OLI1"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	46723	46953	.	+	.	gene_id "Q0130"; transcript_id "Q0130_mRNA"; gene_name "OLI1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	46723	46953	.	+	.	gene_id "Q0130"; transcript_id "Q0130_mRNA"; exon_number "1"; gene_name "OLI1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0130_mRNA-E1";
+Mito	sgd	CDS	46723	46950	.	+	0	gene_id "Q0130"; transcript_id "Q0130_mRNA"; exon_number "1"; gene_name "OLI1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0130";
+Mito	sgd	start_codon	46723	46725	.	+	0	gene_id "Q0130"; transcript_id "Q0130_mRNA"; exon_number "1"; gene_name "OLI1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	stop_codon	46951	46953	.	+	0	gene_id "Q0130"; transcript_id "Q0130_mRNA"; exon_number "1"; gene_name "OLI1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	48201	48290	.	+	.	gene_id "tS(UGA)Q2"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	48201	48290	.	+	.	gene_id "tS(UGA)Q2"; transcript_id "tS(UGA)Q2_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	48201	48290	.	+	.	gene_id "tS(UGA)Q2"; transcript_id "tS(UGA)Q2_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tS(UGA)Q2_tRNA-E1";
+Mito	sgd	gene	48901	50097	.	+	.	gene_id "Q0140"; gene_name "VAR1"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	48901	50097	.	+	.	gene_id "Q0140"; transcript_id "Q0140_mRNA"; gene_name "VAR1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	48901	50097	.	+	.	gene_id "Q0140"; transcript_id "Q0140_mRNA"; exon_number "1"; gene_name "VAR1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0140_mRNA-E1";
+Mito	sgd	CDS	48901	50094	.	+	0	gene_id "Q0140"; transcript_id "Q0140_mRNA"; exon_number "1"; gene_name "VAR1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0140";
+Mito	sgd	start_codon	48901	48903	.	+	0	gene_id "Q0140"; transcript_id "Q0140_mRNA"; exon_number "1"; gene_name "VAR1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	stop_codon	50095	50097	.	+	0	gene_id "Q0140"; transcript_id "Q0140_mRNA"; exon_number "1"; gene_name "VAR1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	51052	51228	.	+	.	gene_id "Q0142"; gene_name "Q0142"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	51052	51228	.	+	.	gene_id "Q0142"; transcript_id "Q0142_mRNA"; gene_name "Q0142"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	51052	51228	.	+	.	gene_id "Q0142"; transcript_id "Q0142_mRNA"; exon_number "1"; gene_name "Q0142"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0142_mRNA-E1";
+Mito	sgd	CDS	51052	51225	.	+	0	gene_id "Q0142"; transcript_id "Q0142_mRNA"; exon_number "1"; gene_name "Q0142"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0142";
+Mito	sgd	start_codon	51052	51054	.	+	0	gene_id "Q0142"; transcript_id "Q0142_mRNA"; exon_number "1"; gene_name "Q0142"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	stop_codon	51226	51228	.	+	0	gene_id "Q0142"; transcript_id "Q0142_mRNA"; exon_number "1"; gene_name "Q0142"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	51277	51429	.	+	.	gene_id "Q0143"; gene_name "Q0143"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	51277	51429	.	+	.	gene_id "Q0143"; transcript_id "Q0143_mRNA"; gene_name "Q0143"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	51277	51429	.	+	.	gene_id "Q0143"; transcript_id "Q0143_mRNA"; exon_number "1"; gene_name "Q0143"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0143_mRNA-E1";
+Mito	sgd	CDS	51277	51426	.	+	0	gene_id "Q0143"; transcript_id "Q0143_mRNA"; exon_number "1"; gene_name "Q0143"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0143";
+Mito	sgd	start_codon	51277	51279	.	+	0	gene_id "Q0143"; transcript_id "Q0143_mRNA"; exon_number "1"; gene_name "Q0143"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	stop_codon	51427	51429	.	+	0	gene_id "Q0143"; transcript_id "Q0143_mRNA"; exon_number "1"; gene_name "Q0143"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	54109	54438	.	+	.	gene_id "Q0144"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	54109	54438	.	+	.	gene_id "Q0144"; transcript_id "Q0144_mRNA"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	54109	54438	.	+	.	gene_id "Q0144"; transcript_id "Q0144_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0144_mRNA-E1";
+Mito	sgd	CDS	54109	54435	.	+	0	gene_id "Q0144"; transcript_id "Q0144_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0144";
+Mito	sgd	start_codon	54109	54111	.	+	0	gene_id "Q0144"; transcript_id "Q0144_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	stop_codon	54436	54438	.	+	0	gene_id "Q0144"; transcript_id "Q0144_mRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	58009	62447	.	+	.	gene_id "Q0158"; gene_name "21S_RRNA"; gene_source "sgd"; gene_biotype "rRNA";
+Mito	sgd	transcript	58009	62447	.	+	.	gene_id "Q0158"; transcript_id "Q0158_rRNA"; gene_name "21S_RRNA"; gene_source "sgd"; gene_biotype "rRNA"; transcript_source "sgd"; transcript_biotype "rRNA";
+Mito	sgd	exon	58009	60724	.	+	.	gene_id "Q0158"; transcript_id "Q0158_rRNA"; exon_number "1"; gene_name "21S_RRNA"; gene_source "sgd"; gene_biotype "rRNA"; transcript_source "sgd"; transcript_biotype "rRNA"; exon_id "Q0158_rRNA-E1";
+Mito	sgd	exon	61868	62447	.	+	.	gene_id "Q0158"; transcript_id "Q0158_rRNA"; exon_number "2"; gene_name "21S_RRNA"; gene_source "sgd"; gene_biotype "rRNA"; transcript_source "sgd"; transcript_biotype "rRNA"; exon_id "Q0158_rRNA-E2";
+Mito	sgd	gene	61022	61729	.	+	.	gene_id "Q0160"; gene_name "SCEI"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	61022	61729	.	+	.	gene_id "Q0160"; transcript_id "Q0160_mRNA"; gene_name "SCEI"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	61022	61729	.	+	.	gene_id "Q0160"; transcript_id "Q0160_mRNA"; exon_number "1"; gene_name "SCEI"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0160_mRNA-E1";
+Mito	sgd	CDS	61022	61726	.	+	0	gene_id "Q0160"; transcript_id "Q0160_mRNA"; exon_number "1"; gene_name "SCEI"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0160";
+Mito	sgd	start_codon	61022	61024	.	+	0	gene_id "Q0160"; transcript_id "Q0160_mRNA"; exon_number "1"; gene_name "SCEI"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	stop_codon	61727	61729	.	+	0	gene_id "Q0160"; transcript_id "Q0160_mRNA"; exon_number "1"; gene_name "SCEI"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	63862	63937	.	+	.	gene_id "tT(UGU)Q1"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	63862	63937	.	+	.	gene_id "tT(UGU)Q1"; transcript_id "tT(UGU)Q1_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	63862	63937	.	+	.	gene_id "tT(UGU)Q1"; transcript_id "tT(UGU)Q1_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tT(UGU)Q1_tRNA-E1";
+Mito	sgd	gene	64415	64490	.	+	.	gene_id "tC(GCA)Q"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	64415	64490	.	+	.	gene_id "tC(GCA)Q"; transcript_id "tC(GCA)Q_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	64415	64490	.	+	.	gene_id "tC(GCA)Q"; transcript_id "tC(GCA)Q_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tC(GCA)Q_tRNA-E1";
+Mito	sgd	gene	64596	64670	.	+	.	gene_id "tH(GUG)Q"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	64596	64670	.	+	.	gene_id "tH(GUG)Q"; transcript_id "tH(GUG)Q_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	64596	64670	.	+	.	gene_id "tH(GUG)Q"; transcript_id "tH(GUG)Q_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tH(GUG)Q_tRNA-E1";
+Mito	sgd	gene	65770	66174	.	+	.	gene_id "Q0182"; gene_name "Q0182"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	65770	66174	.	+	.	gene_id "Q0182"; transcript_id "Q0182_mRNA"; gene_name "Q0182"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	65770	66174	.	+	.	gene_id "Q0182"; transcript_id "Q0182_mRNA"; exon_number "1"; gene_name "Q0182"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0182_mRNA-E1";
+Mito	sgd	CDS	65770	66171	.	+	0	gene_id "Q0182"; transcript_id "Q0182_mRNA"; exon_number "1"; gene_name "Q0182"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0182";
+Mito	sgd	start_codon	65770	65772	.	+	0	gene_id "Q0182"; transcript_id "Q0182_mRNA"; exon_number "1"; gene_name "Q0182"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	stop_codon	66172	66174	.	+	0	gene_id "Q0182"; transcript_id "Q0182_mRNA"; exon_number "1"; gene_name "Q0182"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	66095	66179	.	+	.	gene_id "tL(UAA)Q"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	66095	66179	.	+	.	gene_id "tL(UAA)Q"; transcript_id "tL(UAA)Q_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	66095	66179	.	+	.	gene_id "tL(UAA)Q"; transcript_id "tL(UAA)Q_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tL(UAA)Q_tRNA-E1";
+Mito	sgd	gene	66210	66285	.	+	.	gene_id "tQ(UUG)Q"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	66210	66285	.	+	.	gene_id "tQ(UUG)Q"; transcript_id "tQ(UUG)Q_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	66210	66285	.	+	.	gene_id "tQ(UUG)Q"; transcript_id "tQ(UUG)Q_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tQ(UUG)Q_tRNA-E1";
+Mito	sgd	gene	67061	67134	.	+	.	gene_id "tK(UUU)Q"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	67061	67134	.	+	.	gene_id "tK(UUU)Q"; transcript_id "tK(UUU)Q_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	67061	67134	.	+	.	gene_id "tK(UUU)Q"; transcript_id "tK(UUU)Q_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tK(UUU)Q_tRNA-E1";
+Mito	sgd	gene	67309	67381	.	+	.	gene_id "tR(UCU)Q1"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	67309	67381	.	+	.	gene_id "tR(UCU)Q1"; transcript_id "tR(UCU)Q1_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	67309	67381	.	+	.	gene_id "tR(UCU)Q1"; transcript_id "tR(UCU)Q1_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tR(UCU)Q1_tRNA-E1";
+Mito	sgd	gene	67468	67542	.	+	.	gene_id "tG(UCC)Q"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	67468	67542	.	+	.	gene_id "tG(UCC)Q"; transcript_id "tG(UCC)Q_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	67468	67542	.	+	.	gene_id "tG(UCC)Q"; transcript_id "tG(UCC)Q_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tG(UCC)Q_tRNA-E1";
+Mito	sgd	gene	68322	68396	.	+	.	gene_id "tD(GUC)Q"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	68322	68396	.	+	.	gene_id "tD(GUC)Q"; transcript_id "tD(GUC)Q_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	68322	68396	.	+	.	gene_id "tD(GUC)Q"; transcript_id "tD(GUC)Q_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tD(GUC)Q_tRNA-E1";
+Mito	sgd	gene	69203	69288	.	+	.	gene_id "tS(GCU)Q1"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	69203	69288	.	+	.	gene_id "tS(GCU)Q1"; transcript_id "tS(GCU)Q1_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	69203	69288	.	+	.	gene_id "tS(GCU)Q1"; transcript_id "tS(GCU)Q1_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tS(GCU)Q1_tRNA-E1";
+Mito	sgd	gene	69289	69362	.	+	.	gene_id "tR(ACG)Q2"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	69289	69362	.	+	.	gene_id "tR(ACG)Q2"; transcript_id "tR(ACG)Q2_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	69289	69362	.	+	.	gene_id "tR(ACG)Q2"; transcript_id "tR(ACG)Q2_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tR(ACG)Q2_tRNA-E1";
+Mito	sgd	gene	69846	69921	.	+	.	gene_id "tA(UGC)Q"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	69846	69921	.	+	.	gene_id "tA(UGC)Q"; transcript_id "tA(UGC)Q_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	69846	69921	.	+	.	gene_id "tA(UGC)Q"; transcript_id "tA(UGC)Q_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tA(UGC)Q_tRNA-E1";
+Mito	sgd	gene	70162	70237	.	+	.	gene_id "tI(GAU)Q"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	70162	70237	.	+	.	gene_id "tI(GAU)Q"; transcript_id "tI(GAU)Q_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	70162	70237	.	+	.	gene_id "tI(GAU)Q"; transcript_id "tI(GAU)Q_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tI(GAU)Q_tRNA-E1";
+Mito	sgd	gene	70824	70907	.	+	.	gene_id "tY(GUA)Q"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	70824	70907	.	+	.	gene_id "tY(GUA)Q"; transcript_id "tY(GUA)Q_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	70824	70907	.	+	.	gene_id "tY(GUA)Q"; transcript_id "tY(GUA)Q_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tY(GUA)Q_tRNA-E1";
+Mito	sgd	gene	71433	71503	.	+	.	gene_id "tN(GUU)Q"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	71433	71503	.	+	.	gene_id "tN(GUU)Q"; transcript_id "tN(GUU)Q_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	71433	71503	.	+	.	gene_id "tN(GUU)Q"; transcript_id "tN(GUU)Q_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tN(GUU)Q_tRNA-E1";
+Mito	sgd	gene	72630	72705	.	+	.	gene_id "tM(CAU)Q1"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	72630	72705	.	+	.	gene_id "tM(CAU)Q1"; transcript_id "tM(CAU)Q1_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	72630	72705	.	+	.	gene_id "tM(CAU)Q1"; transcript_id "tM(CAU)Q1_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tM(CAU)Q1_tRNA-E1";
+Mito	sgd	gene	73758	74513	.	+	.	gene_id "Q0250"; gene_name "COX2"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	73758	74513	.	+	.	gene_id "Q0250"; transcript_id "Q0250_mRNA"; gene_name "COX2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	73758	74513	.	+	.	gene_id "Q0250"; transcript_id "Q0250_mRNA"; exon_number "1"; gene_name "COX2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0250_mRNA-E1";
+Mito	sgd	CDS	73758	74510	.	+	0	gene_id "Q0250"; transcript_id "Q0250_mRNA"; exon_number "1"; gene_name "COX2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0250";
+Mito	sgd	start_codon	73758	73760	.	+	0	gene_id "Q0250"; transcript_id "Q0250_mRNA"; exon_number "1"; gene_name "COX2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	stop_codon	74511	74513	.	+	0	gene_id "Q0250"; transcript_id "Q0250_mRNA"; exon_number "1"; gene_name "COX2"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	74495	75984	.	+	.	gene_id "Q0255"; gene_name "Q0255"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	74495	75984	.	+	.	gene_id "Q0255"; transcript_id "Q0255_mRNA"; gene_name "Q0255"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	74495	75622	.	+	.	gene_id "Q0255"; transcript_id "Q0255_mRNA"; exon_number "1"; gene_name "Q0255"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0255_mRNA-E1";
+Mito	sgd	CDS	74495	75622	.	+	0	gene_id "Q0255"; transcript_id "Q0255_mRNA"; exon_number "1"; gene_name "Q0255"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0255";
+Mito	sgd	start_codon	74495	74497	.	+	0	gene_id "Q0255"; transcript_id "Q0255_mRNA"; exon_number "1"; gene_name "Q0255"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	75663	75872	.	+	.	gene_id "Q0255"; transcript_id "Q0255_mRNA"; exon_number "2"; gene_name "Q0255"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0255_mRNA-E2";
+Mito	sgd	CDS	75663	75872	.	+	0	gene_id "Q0255"; transcript_id "Q0255_mRNA"; exon_number "2"; gene_name "Q0255"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0255";
+Mito	sgd	exon	75904	75984	.	+	.	gene_id "Q0255"; transcript_id "Q0255_mRNA"; exon_number "3"; gene_name "Q0255"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0255_mRNA-E3";
+Mito	sgd	CDS	75904	75981	.	+	0	gene_id "Q0255"; transcript_id "Q0255_mRNA"; exon_number "3"; gene_name "Q0255"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0255";
+Mito	sgd	stop_codon	75982	75984	.	+	0	gene_id "Q0255"; transcript_id "Q0255_mRNA"; exon_number "3"; gene_name "Q0255"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	77431	77505	.	+	.	gene_id "tF(GAA)Q"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	77431	77505	.	+	.	gene_id "tF(GAA)Q"; transcript_id "tF(GAA)Q_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	77431	77505	.	+	.	gene_id "tF(GAA)Q"; transcript_id "tF(GAA)Q_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tF(GAA)Q_tRNA-E1";
+Mito	sgd	gene	78089	78162	.	-	.	gene_id "tT(UAG)Q2"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	78089	78162	.	-	.	gene_id "tT(UAG)Q2"; transcript_id "tT(UAG)Q2_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	78089	78162	.	-	.	gene_id "tT(UAG)Q2"; transcript_id "tT(UAG)Q2_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tT(UAG)Q2_tRNA-E1";
+Mito	sgd	gene	78533	78608	.	+	.	gene_id "tV(UAC)Q"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	78533	78608	.	+	.	gene_id "tV(UAC)Q"; transcript_id "tV(UAC)Q_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	78533	78608	.	+	.	gene_id "tV(UAC)Q"; transcript_id "tV(UAC)Q_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tV(UAC)Q_tRNA-E1";
+Mito	sgd	gene	79213	80022	.	+	.	gene_id "Q0275"; gene_name "COX3"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	79213	80022	.	+	.	gene_id "Q0275"; transcript_id "Q0275_mRNA"; gene_name "COX3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	79213	80022	.	+	.	gene_id "Q0275"; transcript_id "Q0275_mRNA"; exon_number "1"; gene_name "COX3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0275_mRNA-E1";
+Mito	sgd	CDS	79213	80019	.	+	0	gene_id "Q0275"; transcript_id "Q0275_mRNA"; exon_number "1"; gene_name "COX3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0275";
+Mito	sgd	start_codon	79213	79215	.	+	0	gene_id "Q0275"; transcript_id "Q0275_mRNA"; exon_number "1"; gene_name "COX3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	stop_codon	80020	80022	.	+	0	gene_id "Q0275"; transcript_id "Q0275_mRNA"; exon_number "1"; gene_name "COX3"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	gene	85035	85112	.	+	.	gene_id "tM(CAU)Q2"; gene_source "sgd"; gene_biotype "tRNA";
+Mito	sgd	transcript	85035	85112	.	+	.	gene_id "tM(CAU)Q2"; transcript_id "tM(CAU)Q2_tRNA"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA";
+Mito	sgd	exon	85035	85112	.	+	.	gene_id "tM(CAU)Q2"; transcript_id "tM(CAU)Q2_tRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "tRNA"; transcript_source "sgd"; transcript_biotype "tRNA"; exon_id "tM(CAU)Q2_tRNA-E1";
+Mito	sgd	gene	85295	85777	.	+	.	gene_id "Q0285"; gene_source "sgd"; gene_biotype "ncRNA";
+Mito	sgd	transcript	85295	85777	.	+	.	gene_id "Q0285"; transcript_id "Q0285_ncRNA"; gene_source "sgd"; gene_biotype "ncRNA"; transcript_source "sgd"; transcript_biotype "ncRNA";
+Mito	sgd	exon	85295	85777	.	+	.	gene_id "Q0285"; transcript_id "Q0285_ncRNA"; exon_number "1"; gene_source "sgd"; gene_biotype "ncRNA"; transcript_source "sgd"; transcript_biotype "ncRNA"; exon_id "Q0285_ncRNA-E1";
+Mito	sgd	gene	85554	85709	.	+	.	gene_id "Q0297"; gene_name "Q0297"; gene_source "sgd"; gene_biotype "protein_coding";
+Mito	sgd	transcript	85554	85709	.	+	.	gene_id "Q0297"; transcript_id "Q0297_mRNA"; gene_name "Q0297"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	exon	85554	85709	.	+	.	gene_id "Q0297"; transcript_id "Q0297_mRNA"; exon_number "1"; gene_name "Q0297"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; exon_id "Q0297_mRNA-E1";
+Mito	sgd	CDS	85554	85706	.	+	0	gene_id "Q0297"; transcript_id "Q0297_mRNA"; exon_number "1"; gene_name "Q0297"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding"; protein_id "Q0297";
+Mito	sgd	start_codon	85554	85556	.	+	0	gene_id "Q0297"; transcript_id "Q0297_mRNA"; exon_number "1"; gene_name "Q0297"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";
+Mito	sgd	stop_codon	85707	85709	.	+	0	gene_id "Q0297"; transcript_id "Q0297_mRNA"; exon_number "1"; gene_name "Q0297"; gene_source "sgd"; gene_biotype "protein_coding"; transcript_source "sgd"; transcript_biotype "protein_coding";