snpfreqplot: test-data/1084592.vcf annotate

annotate test-data/1084592.vcf @ 3:3d0adeee3f2b draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit c062eb1cd00ce9d565f3e2f3b042b3dd90d78ce4"

author	iuc
date	Wed, 06 Jan 2021 10:55:53 +0000
parents	1062d6ad6503
children

rev	line source
0 1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	1 ##fileformat=VCFv4.0
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	2 ##fileDate=20201106
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	3 ##source=lofreq call --verbose --ref reference.fa --call-indels --min-cov 5 --max-depth 1000000 --min-bq 30 --min-alt-bq 30 --min-mq 20 --max-mq 255 --min-jq 0 --min-alt-jq 0 --def-alt-jq 0 --sig 0.0005 --bonf dynamic --no-default-filter --no-default-filter -r NC_045512.2:1-14951 -o /data/dnb03/galaxy_db/job_working_directory/012/246/12246258/tmp/lofreq2_call_parallelo8d8yqgo/0.vcf.gz reads.bam
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	4 ##reference=reference.fa
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	5 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw Depth">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	6 ##INFO=<ID=AF,Number=1,Type=Float,Description="Allele Frequency">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	7 ##INFO=<ID=SB,Number=1,Type=Integer,Description="Phred-scaled strand bias at this position">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	8 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="Counts for ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	9 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	10 ##INFO=<ID=CONSVAR,Number=0,Type=Flag,Description="Indicates that the variant is a consensus variant (as opposed to a low frequency variant).">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	11 ##INFO=<ID=HRUN,Number=1,Type=Integer,Description="Homopolymer length to the right of report indel position">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	12 ##FILTER=<ID=min_snvqual_77,Description="Minimum SNV Quality (Phred) 77">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	13 ##FILTER=<ID=min_indelqual_63,Description="Minimum Indel Quality (Phred) 63">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	14 ##FILTER=<ID=min_snvqual_80,Description="Minimum SNV Quality (Phred) 80">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	15 ##FILTER=<ID=min_indelqual_66,Description="Minimum Indel Quality (Phred) 66">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	16 ##FILTER=<ID=min_af_0.050000,Description="Minimum allele frequency 0.050000">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	17 ##FILTER=<ID=min_dp_5,Description="Minimum Coverage 5">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	18 ##FILTER=<ID=sb_fdr,Description="Strand-Bias Multiple Testing Correction: fdr corr. pvalue > 0.001000">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	19 ##SnpEffVersion="4.5covid19 (build 2020-04-15 22:26), by Pablo Cingolani"
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	20 ##SnpEffCmd="SnpEff -i vcf -o vcf -formatEff -classic -no-downstream -no-intergenic -no-upstream -stats /data/dnb03/galaxy_db/job_working_directory/012/246/12246325/outputs/galaxy_dataset_6f0d993e-795a-409c-9e60-c42e81b8063a.dat NC_045512.2 /data/dnb03/galaxy_db/files/6/9/2/dataset_692b463b-8a0c-40e3-8a87-942e48d53fcd.dat "
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	21 ##INFO=<ID=EFF,Number=.,Type=String,Description="Predicted effects for this variant.Format: 'Effect ( Effect_Impact \| Functional_Class \| Codon_Change \| Amino_Acid_Change\| Amino_Acid_length \| Gene_Name \| Transcript_BioType \| Gene_Coding \| Transcript_ID \| Exon_Rank \| Genotype [ \| ERRORS \| WARNINGS ] )' ">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	22 ##INFO=<ID=LOF,Number=.,Type=String,Description="Predicted loss of function effects for this variant. Format: 'Gene_Name \| Gene_ID \| Number_of_transcripts_in_gene \| Percent_of_transcripts_affected'">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	23 ##INFO=<ID=NMD,Number=.,Type=String,Description="Predicted nonsense mediated decay effects for this variant. Format: 'Gene_Name \| Gene_ID \| Number_of_transcripts_in_gene \| Percent_of_transcripts_affected'">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	24 #CHROM POS ID REF ALT QUAL FILTER INFO
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	25 NC_045512.2 164 . C T 133.0 min_af_0.050000 AF=0.001348;DP=16325;DP4=12679,3617,21,6;SB=0
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	26 NC_045512.2 241 . C T 49314.0 PASS AF=0.990942;DP=5741;DP4=1,0,2961,2774;SB=0
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	27 NC_045512.2 323 . GT G 75.0 min_af_0.050000 AF=0.000602;DP=16624;DP4=3541,13119,3,7;HRUN=4;SB=3;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tta/\|L21\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tta/\|L21\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tta/\|L21\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tta/\|L21\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	28 NC_045512.2 343 . G A 92.0 min_af_0.050000 AF=0.000967;DP=26891;DP4=13149,13701,12,17;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gtG/gtA\|V26\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|gtG/gtA\|V26\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|gtG/gtA\|V26\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|gtG/gtA\|V26\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	29 NC_045512.2 424 . AGTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTT A 49314.0 PASS AF=0.867361;DP=12779;DP4=908,822,9479,1605;HRUN=1;SB=1918;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|gtagaagttgaaaaaggcgttttgcctcaacttgaa/gaa\|VEVEKGVLPQLE54E\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A\|INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|gtagaagttgaaaaaggcgttttgcctcaacttgaa/gaa\|VEVEKGVLPQLE54E\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|gtagaagttgaaaaaggcgttttgcctcaacttgaa/gaa\|VEVEKGVLPQLE54E\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|gtagaagttgaaaaaggcgttttgcctcaacttgaa/gaa\|VEVEKGVLPQLE54E\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	30 NC_045512.2 457 . T TA 1257.0 min_af_0.050000 AF=0.006406;DP=11239;DP4=9516,1651,67,5;HRUN=1;SB=11;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gaa/Agaa\|E65R?\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|TA),FRAME_SHIFT(HIGH\|\|gaa/Agaa\|E65R?\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|TA\|WARNING_TRANSCRIPT_NO_STOP_CODON),FRAME_SHIFT(HIGH\|\|gaa/Agaa\|E65R?\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|TA\|WARNING_TRANSCRIPT_NO_STOP_CODON),FRAME_SHIFT(HIGH\|\|gaa/Agaa\|E65R?\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|TA);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	31 NC_045512.2 509 . GGTCATGTTATGGTT G 158.0 min_af_0.050000 AF=0.003328;DP=5709;DP4=3637,2595,8,11;HRUN=2;SB=7;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ggtcatgttatggttgag/\|GHVMVE82\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ggtcatgttatggttgag/\|GHVMVE82\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ggtcatgttatggttgag/\|GHVMVE82\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ggtcatgttatggttgag/\|GHVMVE82\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	32 NC_045512.2 558 . G T 440.0 min_af_0.050000 AF=0.007488;DP=4941;DP4=2892,2007,24,13;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G98V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G98V\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|T\|WARNING_TRANSCRIPT_NO_STOP_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G98V\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|T\|WARNING_TRANSCRIPT_NO_STOP_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G98V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	33 NC_045512.2 602 . G A 134.0 min_af_0.050000 AF=0.001451;DP=14475;DP4=3277,11172,8,16;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gaa/Aaa\|E113K\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gaa/Aaa\|E113K\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gaa/Aaa\|E113K\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gaa/Aaa\|E113K\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	34 NC_045512.2 685 . AAAGTCATTT A 186.0 min_af_0.050000 AF=0.001184;DP=14362;DP4=3266,11121,4,13;HRUN=3;SB=0;INDEL;EFF=CODON_DELETION(MODERATE\|\|aagtcattt/\|KSF141\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),CODON_DELETION(MODERATE\|\|aagtcattt/\|KSF141\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON),CODON_DELETION(MODERATE\|\|aagtcattt/\|KSF141\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON),CODON_DELETION(MODERATE\|\|aagtcattt/\|KSF141\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	35 NC_045512.2 951 . A G 160.0 min_af_0.050000 AF=0.003730;DP=4021;DP4=506,3495,0,17;SB=8;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tAc/tGc\|Y229C\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tAc/tGc\|Y229C\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tAc/tGc\|Y49C\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tAc/tGc\|Y49C\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	36 NC_045512.2 1019 . C T 109.0 min_af_0.050000 AF=0.000957;DP=21953;DP4=17831,4091,17,7;SB=7;EFF=STOP_GAINED(HIGH\|NONSENSE\|Cag/Tag\|Q252\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),STOP_GAINED(HIGH\|NONSENSE\|Cag/Tag\|Q252\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),STOP_GAINED(HIGH\|NONSENSE\|Cag/Tag\|Q72\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),STOP_GAINED(HIGH\|NONSENSE\|Cag/Tag\|Q72\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON);LOF=(ORF1ab\|GU280_gp01\|28\|0.04);NMD=(ORF1ab\|GU280_gp01\|28\|0.04)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	37 NC_045512.2 1020 . A G 108.0 min_af_0.050000 AF=0.000957;DP=21933;DP4=17771,4130,20,5;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAg/cGg\|Q252R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAg/cGg\|Q252R\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAg/cGg\|Q72R\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAg/cGg\|Q72R\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	38 NC_045512.2 1026 . CT C 166.0 min_af_0.050000 AF=0.000872;DP=21786;DP4=17611,4236,13,6;HRUN=4;SB=6;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F255\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F255\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F75\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F75\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.11)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	39 NC_045512.2 1027 . T C 192.0 min_af_0.050000 AF=0.001376;DP=21810;DP4=17520,4226,28,6;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P254\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P254\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P74\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P74\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	40 NC_045512.2 1115 . A T 736.0 min_af_0.050000;sb_fdr AF=0.008634;DP=6370;DP4=2492,3819,4,51;SB=70;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I284F\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I284F\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I104F\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I104F\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	41 NC_045512.2 1133 . A T 481.0 min_af_0.050000 AF=0.006411;DP=6551;DP4=2807,3701,35,7;SB=68;EFF=STOP_GAINED(HIGH\|NONSENSE\|Aag/Tag\|K290\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),STOP_GAINED(HIGH\|NONSENSE\|Aag/Tag\|K290\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),STOP_GAINED(HIGH\|NONSENSE\|Aag/Tag\|K110\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),STOP_GAINED(HIGH\|NONSENSE\|Aag/Tag\|K110\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON);LOF=(ORF1ab\|GU280_gp01\|28\|0.04);NMD=(ORF1ab\|GU280_gp01\|28\|0.04)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	42 NC_045512.2 1201 . C T 184.0 min_af_0.050000 AF=0.001608;DP=18660;DP4=3443,15178,7,23;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C312\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C312\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C132\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C132\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	43 NC_045512.2 1211 . T C 100.0 min_af_0.050000 AF=0.001014;DP=18739;DP4=3499,15213,6,15;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgc/Cgc\|C316R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgc/Cgc\|C316R\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgc/Cgc\|C136R\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgc/Cgc\|C136R\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	44 NC_045512.2 1644 . A C 438.0 min_af_0.050000 AF=0.003210;DP=14641;DP4=11631,2951,20,31;SB=94;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aCc\|N460T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aCc\|N460T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aCc\|N280T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aCc\|N280T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	45 NC_045512.2 1647 . T A 496.0 min_af_0.050000 AF=0.003406;DP=14679;DP4=11564,3059,19,34;SB=108;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTc/aAc\|I461N\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTc/aAc\|I461N\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTc/aAc\|I281N\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTc/aAc\|I281N\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	46 NC_045512.2 1656 . T A 395.0 min_af_0.050000 AF=0.003129;DP=14702;DP4=11472,3173,20,31;SB=87;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTt/gAt\|V464D\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTt/gAt\|V464D\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTt/gAt\|V284D\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTt/gAt\|V284D\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	47 NC_045512.2 1659 . G T 351.0 min_af_0.050000 AF=0.002908;DP=14789;DP4=11547,3193,16,29;SB=90;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G465V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G465V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G285V\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G285V\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	48 NC_045512.2 1702 . T C 289.0 min_af_0.050000 AF=0.002467;DP=14590;DP4=11407,3111,29,7;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S479\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S479\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S299\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S299\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	49 NC_045512.2 1710 . C T 275.0 min_af_0.050000 AF=0.002280;DP=14476;DP4=11396,3040,21,17;SB=29;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A482V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A482V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A302V\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A302V\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	50 NC_045512.2 1721 . G A 140.0 min_af_0.050000 AF=0.001466;DP=14325;DP4=11313,2989,14,7;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A486T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A486T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A306T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A306T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	51 NC_045512.2 1868 . G A 132.0 min_af_0.050000 AF=0.001298;DP=16183;DP4=3249,12900,4,20;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A535T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A535T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A355T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A355T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	52 NC_045512.2 1874 . G A 95.0 min_af_0.050000 AF=0.001055;DP=16116;DP4=3127,12965,3,15;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A537T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A537T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A357T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A357T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	53 NC_045512.2 1886 . G A 84.0 min_af_0.050000 AF=0.001075;DP=15820;DP4=2886,12908,4,17;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A541T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A541T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A361T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A361T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	54 NC_045512.2 1914 . G A 137.0 min_af_0.050000 AF=0.001452;DP=15147;DP4=2713,12407,6,18;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R550H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R550H\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R370H\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R370H\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	55 NC_045512.2 2904 . TA T 78.0 min_af_0.050000 AF=0.001265;DP=6322;DP4=5093,1224,5,3;HRUN=5;SB=7;INDEL;EFF=FRAME_SHIFT(HIGH\|\|act/\|T882\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|act/\|T882\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|act/\|T64\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|act/\|T64\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	56 NC_045512.2 3036 . TC T 93.0 min_af_0.050000 AF=0.002984;DP=2011;DP4=1107,916,3,3;HRUN=1;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttc/\|F924\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),FRAME_SHIFT(HIGH\|\|ttc/\|F924\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),FRAME_SHIFT(HIGH\|\|ttc/\|F106\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),FRAME_SHIFT(HIGH\|\|ttc/\|F106\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	57 NC_045512.2 3037 . C T 49314.0 PASS AF=0.991580;DP=2019;DP4=0,0,1111,902;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F924\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F924\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F106\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F106\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	58 NC_045512.2 3259 . G T 128.0 min_af_0.050000 AF=0.002216;DP=6770;DP4=5516,1236,14,1;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|caG/caT\|Q998H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|caG/caT\|Q998H\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|caG/caT\|Q180H\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|caG/caT\|Q180H\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	59 NC_045512.2 3412 . TA T 76.0 min_af_0.050000 AF=0.001168;DP=6847;DP4=1290,5560,1,7;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aag/\|K1051\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aag/\|K1051\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aag/\|K233\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aag/\|K233\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	60 NC_045512.2 4174 . TA T 155.0 min_af_0.050000 AF=0.000954;DP=19915;DP4=15786,4180,15,4;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aag/\|K1305\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aag/\|K1305\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aag/\|K487\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aag/\|K487\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	61 NC_045512.2 4185 . G T 321.0 min_af_0.050000 AF=0.002271;DP=20253;DP4=15843,4355,24,24;SB=46;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G1307V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G1307V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G489V\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G489V\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	62 NC_045512.2 4308 . A G 307.0 min_af_0.050000 AF=0.001970;DP=21317;DP4=4425,16849,9,34;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K1348R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K1348R\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K530R\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K530R\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	63 NC_045512.2 4321 . CT C 96.0 min_af_0.050000 AF=0.000624;DP=20829;DP4=4119,17027,3,10;HRUN=4;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tac/\|Y1354\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tac/\|Y1354\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tac/\|Y536\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tac/\|Y536\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	64 NC_045512.2 4391 . C T 91.0 min_af_0.050000 AF=0.001118;DP=21462;DP4=4942,16483,5,24;SB=1;EFF=STOP_GAINED(HIGH\|NONSENSE\|Cga/Tga\|R1376\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),STOP_GAINED(HIGH\|NONSENSE\|Cga/Tga\|R1376\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),STOP_GAINED(HIGH\|NONSENSE\|Cga/Tga\|R558\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),STOP_GAINED(HIGH\|NONSENSE\|Cga/Tga\|R558\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON);LOF=(ORF1ab\|GU280_gp01\|28\|0.04);NMD=(ORF1ab\|GU280_gp01\|28\|0.04)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	65 NC_045512.2 4412 . GA G 74.0 min_af_0.050000 AF=0.000953;DP=7343;DP4=4106,3237,2,5;HRUN=2;SB=5;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gaa/\|E1383\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|gaa/\|E1383\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|gaa/\|E565\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|gaa/\|E565\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	66 NC_045512.2 5284 . C T 108.0 min_af_0.050000 AF=0.002361;DP=5082;DP4=3452,1616,2,10;SB=34;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N1673\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N1673\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N855\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N855\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	67 NC_045512.2 5291 . CT C 298.0 min_af_0.050000 AF=0.002476;DP=8887;DP4=7154,1717,15,7;HRUN=2;SB=7;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ctt/\|L1676\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ctt/\|L1676\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ctt/\|L858\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ctt/\|L858\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	68 NC_045512.2 5305 . G T 135.0 min_af_0.050000 AF=0.001876;DP=9060;DP4=7211,1817,14,4;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L1680F\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L1680F\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L862F\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L862F\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	69 NC_045512.2 5411 . G A 238.0 min_af_0.050000 AF=0.003764;DP=6110;DP4=3843,2238,8,16;SB=23;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A1716T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A1716T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A898T\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A898T\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	70 NC_045512.2 5743 . G C 189.0 min_af_0.050000 AF=0.005262;DP=3421;DP4=1740,1660,3,16;SB=26;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaG/gaC\|E1826D\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaG/gaC\|E1826D\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaG/gaC\|E1008D\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaG/gaC\|E1008D\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	71 NC_045512.2 5744 . T C 311.0 min_af_0.050000 AF=0.007656;DP=3396;DP4=1744,1626,8,18;SB=13;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y1827H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y1827H\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y1009H\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y1009H\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	72 NC_045512.2 5809 . AGACGGTGCTTTACTT A 92.0 min_af_0.050000 AF=0.000900;DP=9999;DP4=2218,7782,1,8;HRUN=1;SB=1;INDEL;EFF=CODON_DELETION(MODERATE\|\|gacggtgctttactt/\|DGALL1849\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),CODON_DELETION(MODERATE\|\|gacggtgctttactt/\|DGALL1849\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),CODON_DELETION(MODERATE\|\|gacggtgctttactt/\|DGALL1031\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),CODON_DELETION(MODERATE\|\|gacggtgctttactt/\|DGALL1031\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	73 NC_045512.2 5924 . G A 89.0 min_af_0.050000 AF=0.000850;DP=23540;DP4=13235,10277,7,14;SB=13;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtt/Att\|V1887I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtt/Att\|V1887I\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtt/Att\|V1069I\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtt/Att\|V1069I\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	74 NC_045512.2 6044 . AATT A 89.0 min_af_0.050000 AF=0.001604;DP=4363;DP4=1797,2576,4,3;HRUN=2;SB=3;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|aatttt/att\|NF1927I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|aatttt/att\|NF1927I\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|aatttt/att\|NF1109I\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|aatttt/att\|NF1109I\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	75 NC_045512.2 6139 . AT A 118.0 min_af_0.050000 AF=0.000973;DP=14384;DP4=2789,11592,3,11;HRUN=5;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttc/\|F1960\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttc/\|F1960\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttc/\|F1142\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttc/\|F1142\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	76 NC_045512.2 6177 . AT A 194.0 min_af_0.050000 AF=0.001019;DP=18642;DP4=2648,15985,2,17;HRUN=2;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tat/\|Y1972\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tat/\|Y1972\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tat/\|Y1154\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tat/\|Y1154\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	77 NC_045512.2 6179 . TA T 68.0 min_af_0.050000 AF=0.000477;DP=18879;DP4=2626,16309,0,9;HRUN=1;SB=2;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tat/\|Y1972\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),FRAME_SHIFT(HIGH\|\|tat/\|Y1972\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),FRAME_SHIFT(HIGH\|\|tat/\|Y1154\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),FRAME_SHIFT(HIGH\|\|tat/\|Y1154\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	78 NC_045512.2 6199 . T C 159.0 min_af_0.050000 AF=0.001119;DP=49166;DP4=31656,17424,42,17;SB=4;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S1978\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S1978\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S1160\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S1160\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	79 NC_045512.2 6242 . C T 150.0 min_af_0.050000 AF=0.000761;DP=51238;DP4=31718,19455,32,17;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H1993Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H1993Y\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H1175Y\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H1175Y\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	80 NC_045512.2 6254 . G A 127.0 min_af_0.050000 AF=0.000758;DP=39566;DP4=31533,7989,26,8;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1997T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1997T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1179T\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1179T\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	81 NC_045512.2 6270 . C T 81.0 min_af_0.050000 AF=0.000632;DP=39548;DP4=30669,8836,22,9;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T2002M\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T2002M\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T1184M\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T1184M\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	82 NC_045512.2 6271 . G A 176.0 min_af_0.050000 AF=0.001023;DP=39089;DP4=30156,8871,25,21;SB=32;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acG/acA\|T2002\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|acG/acA\|T2002\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|acG/acA\|T1184\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|acG/acA\|T1184\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	83 NC_045512.2 6297 . G A 180.0 min_af_0.050000 AF=0.000958;DP=38631;DP4=29557,9033,26,11;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R2011H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R2011H\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R1193H\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R1193H\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	84 NC_045512.2 6312 . CA C 294.0 min_af_0.050000 AF=0.000902;DP=37682;DP4=29256,8543,26,8;HRUN=4;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaa/\|K2017\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K2017\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K1199\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K1199\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	85 NC_045512.2 6396 . T C 258.0 min_af_0.050000 AF=0.002203;DP=14981;DP4=6634,8302,5,31;SB=38;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cTa/cCa\|L2044P\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cTa/cCa\|L2044P\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cTa/cCa\|L1226P\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cTa/cCa\|L1226P\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	86 NC_045512.2 6409 . T C 102.0 min_af_0.050000 AF=0.000752;DP=34578;DP4=6634,27908,5,23;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S2048\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S2048\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S1230\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S1230\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	87 NC_045512.2 6503 . G A 102.0 min_af_0.050000 AF=0.000761;DP=31528;DP4=5228,26256,5,25;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A2080T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A2080T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1262T\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1262T\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	88 NC_045512.2 6513 . G T 199.0 min_af_0.050000 AF=0.001168;DP=30810;DP4=4748,25994,7,49;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGt/aTt\|S2083I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGt/aTt\|S2083I\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGt/aTt\|S1265I\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGt/aTt\|S1265I\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	89 NC_045512.2 6906 . C T 41177.0 PASS AF=0.995383;DP=1083;DP4=1,0,564,518;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCa/tTa\|S2214L\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCa/tTa\|S2214L\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCa/tTa\|S1396L\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCa/tTa\|S1396L\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	90 NC_045512.2 7246 . GT G 95.0 min_af_0.050000 AF=0.005029;DP=1193;DP4=555,642,3,3;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttg/\|L2329\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttg/\|L2329\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttg/\|L1511\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttg/\|L1511\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	91 NC_045512.2 7614 . G C 134.0 min_af_0.050000 AF=0.010056;DP=895;DP4=349,535,6,3;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGg/tCg\|W2450S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGg/tCg\|W2450S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGg/tCg\|W1632S\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGg/tCg\|W1632S\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	92 NC_045512.2 7615 . G C 135.0 min_af_0.050000 AF=0.010045;DP=896;DP4=350,535,6,3;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tgG/tgC\|W2450C\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tgG/tgC\|W2450C\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tgG/tgC\|W1632C\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tgG/tgC\|W1632C\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	93 NC_045512.2 7772 . CT C 79.0 min_af_0.050000 AF=0.000827;DP=9676;DP4=7597,2126,5,3;HRUN=3;SB=4;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tac/\|Y2504\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tac/\|Y2504\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tac/\|Y1686\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tac/\|Y1686\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	94 NC_045512.2 7788 . C A 130.0 min_af_0.050000 AF=0.003436;DP=3784;DP4=1622,2148,11,2;SB=24;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gAt\|A2508D\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gAt\|A2508D\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gAt\|A1690D\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gAt\|A1690D\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	95 NC_045512.2 7813 . TTC T 77.0 min_af_0.050000 AF=0.001577;DP=3805;DP4=1781,2043,3,3;HRUN=2;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tctcat/\|SH2519\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tctcat/\|SH2519\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tctcat/\|SH1701\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tctcat/\|SH1701\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	96 NC_045512.2 7889 . GT G 703.0 min_af_0.050000 AF=0.004789;DP=10024;DP4=2088,7910,10,38;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F2543\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F2543\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F1725\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F1725\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	97 NC_045512.2 7911 . G C 105.0 min_af_0.050000 AF=0.001495;DP=10036;DP4=2129,7889,2,13;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGt/tCt\|C2549S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGt/tCt\|C2549S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGt/tCt\|C1731S\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGt/tCt\|C1731S\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	98 NC_045512.2 8017 . G A 112.0 min_af_0.050000 AF=0.002980;DP=5034;DP4=4162,854,8,7;SB=21;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcG/gcA\|A2584\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|gcG/gcA\|A2584\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|gcG/gcA\|A1766\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|gcG/gcA\|A1766\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	99 NC_045512.2 8387 . A C 82.0 min_af_0.050000 AF=0.003079;DP=3897;DP4=3112,767,8,5;SB=8;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aac/Cac\|N2708H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aac/Cac\|N2708H\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aac/Cac\|N1890H\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aac/Cac\|N1890H\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	100 NC_045512.2 8937 . C T 98.0 min_af_0.050000 AF=0.001505;DP=9303;DP4=7370,1913,10,4;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A2891V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A2891V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A128V\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A128V\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	101 NC_045512.2 8991 . C T 141.0 min_af_0.050000 AF=0.001933;DP=9310;DP4=7384,1900,17,4;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A2909V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A2909V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A146V\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A146V\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	102 NC_045512.2 9593 . T C 83.0 min_af_0.050000 AF=0.001116;DP=12543;DP4=9868,2657,13,3;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|Ttg/Ctg\|L3110\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|Ttg/Ctg\|L3110\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|Ttg/Ctg\|L347\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|Ttg/Ctg\|L347\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	103 NC_045512.2 9656 . A G 276.0 min_af_0.050000;sb_fdr AF=0.005870;DP=3918;DP4=1706,2185,22,1;SB=67;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Atg/Gtg\|M3131V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Atg/Gtg\|M3131V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Atg/Gtg\|M368V\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Atg/Gtg\|M368V\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	104 NC_045512.2 9807 . G A 135.0 min_af_0.050000 AF=0.001628;DP=11669;DP4=2191,9457,4,15;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C3181Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C3181Y\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C418Y\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C418Y\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	105 NC_045512.2 9808 . C T 149.0 min_af_0.050000 AF=0.001800;DP=11666;DP4=2188,9439,6,31;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C3181\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C3181\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C418\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C418\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	106 NC_045512.2 10450 . C T 569.0 min_af_0.050000 AF=0.010680;DP=3839;DP4=2984,812,31,10;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccC/ccT\|P3395\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|ccC/ccT\|P3395\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|ccC/ccT\|P132\|305\|ORF1ab\|protein_coding\|CODING\|YP_009725301.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ccC/ccT\|P132\|305\|ORF1ab\|protein_coding\|CODING\|YP_009742612.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	107 NC_045512.2 10481 . G A 110.0 min_af_0.050000 AF=0.003086;DP=3564;DP4=2636,916,11,1;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G3406S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G3406S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G143S\|305\|ORF1ab\|protein_coding\|CODING\|YP_009725301.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G143S\|305\|ORF1ab\|protein_coding\|CODING\|YP_009742612.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	108 NC_045512.2 10615 . C T 122.0 min_af_0.050000 AF=0.003522;DP=3407;DP4=1050,2343,7,6;SB=8;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D3450\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D3450\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D187\|305\|ORF1ab\|protein_coding\|CODING\|YP_009725301.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D187\|305\|ORF1ab\|protein_coding\|CODING\|YP_009742612.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	109 NC_045512.2 10679 . T C 451.0 min_af_0.050000 AF=0.010126;DP=3259;DP4=866,2359,7,26;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y3472H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y3472H\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y209H\|305\|ORF1ab\|protein_coding\|CODING\|YP_009725301.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y209H\|305\|ORF1ab\|protein_coding\|CODING\|YP_009742612.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	110 NC_045512.2 11083 . G T 248.0 min_af_0.050000 AF=0.002203;DP=17707;DP4=13818,3821,39,10;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L3606F\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L3606F\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L37F\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L37F\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	111 NC_045512.2 11095 . CT C 240.0 min_af_0.050000 AF=0.001401;DP=17844;DP4=13909,3979,18,7;HRUN=5;SB=3;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tta/\|L3612\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tta/\|L3612\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tta/\|L43\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tta/\|L43\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	112 NC_045512.2 11104 . T C 146.0 min_af_0.050000 AF=0.001454;DP=17883;DP4=13846,3990,25,4;SB=4;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P3613\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P3613\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P44\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P44\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	113 NC_045512.2 11139 . C T 105.0 min_af_0.050000 AF=0.001114;DP=17949;DP4=13766,4153,16,6;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A3625V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A3625V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A56V\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A56V\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	114 NC_045512.2 11248 . G A 90.0 min_af_0.050000 AF=0.001085;DP=17516;DP4=3720,13767,7,17;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|atG/atA\|M3661I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|atG/atA\|M3661I\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|atG/atA\|M92I\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|atG/atA\|M92I\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	115 NC_045512.2 11321 . G A 115.0 min_af_0.050000 AF=0.001101;DP=19067;DP4=3969,15072,6,17;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A3686T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A3686T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A117T\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A117T\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	116 NC_045512.2 11354 . G A 145.0 min_af_0.050000 AF=0.001076;DP=25103;DP4=9900,15171,11,18;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A3697T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A3697T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A128T\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A128T\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	117 NC_045512.2 11406 . T G 80.0 min_af_0.050000 AF=0.001365;DP=8792;DP4=6687,2087,7,7;SB=12;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTc/gGc\|V3714G\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTc/gGc\|V3714G\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTc/gGc\|V145G\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTc/gGc\|V145G\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	118 NC_045512.2 11540 . GT G 98.0 min_af_0.050000 AF=0.001671;DP=5387;DP4=1684,3719,5,4;HRUN=5;SB=8;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F3760\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F3760\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F191\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F191\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	119 NC_045512.2 11654 . T C 120.0 min_af_0.050000 AF=0.001515;DP=13857;DP4=6675,7149,9,13;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttt/Ctt\|F3797L\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttt/Ctt\|F3797L\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttt/Ctt\|F228L\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttt/Ctt\|F228L\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	120 NC_045512.2 11939 . G A 81.0 min_af_0.050000 AF=0.000866;DP=19641;DP4=16008,3601,13,6;SB=8;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtc/Atc\|V3892I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtc/Atc\|V3892I\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtc/Atc\|V33I\|82\|ORF1ab\|protein_coding\|CODING\|YP_009725303.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtc/Atc\|V33I\|82\|ORF1ab\|protein_coding\|CODING\|YP_009742614.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	121 NC_045512.2 11952 . A T 80.0 min_af_0.050000 AF=0.000943;DP=19088;DP4=15213,3849,13,6;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAt/aTt\|N3896I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAt/aTt\|N3896I\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAt/aTt\|N37I\|82\|ORF1ab\|protein_coding\|CODING\|YP_009725303.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAt/aTt\|N37I\|82\|ORF1ab\|protein_coding\|CODING\|YP_009742614.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	122 NC_045512.2 12128 . G A 91.0 min_af_0.050000 AF=0.000925;DP=20531;DP4=4035,16468,3,20;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A3955T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A3955T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A13T\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A13T\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	123 NC_045512.2 12129 . C T 87.0 min_af_0.050000 AF=0.000876;DP=20539;DP4=4021,16498,3,15;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A3955V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A3955V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A13V\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A13V\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	124 NC_045512.2 12141 . C T 93.0 min_af_0.050000 AF=0.000878;DP=21647;DP4=5102,16508,3,16;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T3959I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T3959I\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T17I\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T17I\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	125 NC_045512.2 12161 . C T 92.0 min_af_0.050000 AF=0.000874;DP=21732;DP4=5048,16660,6,15;SB=2;EFF=STOP_GAINED(HIGH\|NONSENSE\|Cag/Tag\|Q3966\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),STOP_GAINED(HIGH\|NONSENSE\|Cag/Tag\|Q3966\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),STOP_GAINED(HIGH\|NONSENSE\|Cag/Tag\|Q24\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),STOP_GAINED(HIGH\|NONSENSE\|Cag/Tag\|Q24\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON);LOF=(ORF1ab\|GU280_gp01\|28\|0.04);NMD=(ORF1ab\|GU280_gp01\|28\|0.04)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	126 NC_045512.2 12164 . G T 351.0 min_af_0.050000 AF=0.002070;DP=21735;DP4=5033,16647,15,33;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Tct\|A3967S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Tct\|A3967S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Tct\|A25S\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Tct\|A25S\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	127 NC_045512.2 12201 . A G 204.0 min_af_0.050000 AF=0.001584;DP=20834;DP4=4220,16578,7,29;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K3979R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K3979R\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K37R\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K37R\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	128 NC_045512.2 12224 . G A 103.0 min_af_0.050000 AF=0.000998;DP=20040;DP4=3616,16391,5,18;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A3987T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A3987T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A45T\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A45T\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	129 NC_045512.2 12458 . A G 322.0 min_af_0.050000 AF=0.002236;DP=17442;DP4=13770,3621,34,6;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aca/Gca\|T4065A\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aca/Gca\|T4065A\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aca/Gca\|T123A\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aca/Gca\|T123A\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	130 NC_045512.2 12513 . C T 139.0 min_af_0.050000 AF=0.001298;DP=17726;DP4=13800,3892,14,9;SB=11;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T4083M\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T4083M\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T141M\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T141M\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	131 NC_045512.2 12578 . G T 99.0 min_af_0.050000 AF=0.002130;DP=6103;DP4=2421,3667,9,5;SB=10;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Tat\|D4105Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Tat\|D4105Y\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Tat\|D163Y\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Tat\|D163Y\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	132 NC_045512.2 12754 . C T 193.0 min_af_0.050000 AF=0.001165;DP=29183;DP4=14327,14756,21,71;SB=65;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C4163\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C4163\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C23\|112\|ORF1ab\|protein_coding\|CODING\|YP_009725305.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C23\|112\|ORF1ab\|protein_coding\|CODING\|YP_009742616.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	133 NC_045512.2 12999 . G A 88.0 min_af_0.050000 AF=0.000980;DP=17347;DP4=4073,13246,5,14;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGt/aAt\|S4245N\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGt/aAt\|S4245N\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGt/aAt\|S105N\|112\|ORF1ab\|protein_coding\|CODING\|YP_009725305.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGt/aAt\|S105N\|112\|ORF1ab\|protein_coding\|CODING\|YP_009742616.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	134 NC_045512.2 13034 . G A 201.0 min_af_0.050000 AF=0.000910;DP=47277;DP4=29099,18123,31,13;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4257T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4257T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	135 NC_045512.2 13048 . T C 135.0 min_af_0.050000 AF=0.000711;DP=47843;DP4=29048,18629,26,114;SB=238;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P4261\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P4261\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P8\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P8\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	136 NC_045512.2 13049 . G A 162.0 min_af_0.050000 AF=0.000791;DP=48027;DP4=29118,18852,25,20;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A4262T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A4262T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A9T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A9T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	137 NC_045512.2 13050 . C T 185.0 min_af_0.050000 AF=0.000853;DP=48077;DP4=29117,18902,27,20;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gTc\|A4262V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gTc\|A4262V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gTc\|A9V\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gTc\|A9V\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	138 NC_045512.2 13059 . C T 119.0 min_af_0.050000 AF=0.000665;DP=48140;DP4=28964,19130,18,19;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T4265I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T4265I\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T12I\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T12I\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	139 NC_045512.2 13061 . G A 149.0 min_af_0.050000 AF=0.000747;DP=48218;DP4=28907,19226,43,19;SB=8;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gta/Ata\|V4266I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gta/Ata\|V4266I\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gta/Ata\|V13I\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gta/Ata\|V13I\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	140 NC_045512.2 13084 . T C 155.0 min_af_0.050000 AF=0.000894;DP=35812;DP4=28538,7231,27,8;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A4273\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A4273\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A20\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A20\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	141 NC_045512.2 13094 . G A 91.0 min_af_0.050000 AF=0.000756;DP=35712;DP4=27866,7809,23,7;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A4277T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A4277T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A24T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A24T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	142 NC_045512.2 13123 . TG T 284.0 min_af_0.050000 AF=0.001022;DP=34241;DP4=26326,7960,28,7;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gga/\|G4288\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|gga/\|G4288\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|gga/\|G35\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|gga/\|G35\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.11)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	143 NC_045512.2 13129 . A G 311.0 min_af_0.050000 AF=0.001594;DP=34502;DP4=26344,8069,53,15;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G4288\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G4288\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G35\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G35\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	144 NC_045512.2 13201 . G T 11905.0 min_af_0.050000 AF=0.045618;DP=13043;DP4=6344,6083,306,296;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccG/ccT\|P4312\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|ccG/ccT\|P4312\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|ccG/ccT\|P59\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ccG/ccT\|P59\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	145 NC_045512.2 13235 . G A 191.0 min_af_0.050000 AF=0.001363;DP=30081;DP4=7582,22442,11,32;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4324T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4324T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A71T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A71T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	146 NC_045512.2 13254 . G A 125.0 min_af_0.050000 AF=0.000926;DP=34575;DP4=8035,26482,10,29;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C4330Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C4330Y\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C77Y\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C77Y\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	147 NC_045512.2 13260 . G A 110.0 min_af_0.050000 AF=0.000832;DP=34837;DP4=8162,26632,9,26;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C4332Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C4332Y\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C79Y\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C79Y\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	148 NC_045512.2 13299 . TA T 141.0 min_af_0.050000 AF=0.000576;DP=34699;DP4=8173,26639,4,16;HRUN=4;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaa/\|K4346\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K4346\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K93\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K93\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.11)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	149 NC_045512.2 13334 . G A 93.0 min_af_0.050000 AF=0.000719;DP=33393;DP4=6325,27020,8,20;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A4357T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A4357T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A104T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A104T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	150 NC_045512.2 13345 . T C 142.0 min_af_0.050000 AF=0.000923;DP=37923;DP4=11024,26838,17,19;SB=15;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P4360\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P4360\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P107\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P107\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	151 NC_045512.2 13350 . GT G 67.0 min_af_0.050000 AF=0.000345;DP=37715;DP4=10940,26835,4,9;HRUN=4;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F4363\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F4363\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F110\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F110\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.11)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	152 NC_045512.2 13373 . TG T 74.0 min_af_0.050000 AF=0.000556;DP=16174;DP4=9855,6326,3,6;HRUN=1;SB=7;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tgt/\|C4370\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),FRAME_SHIFT(HIGH\|\|tgt/\|C4370\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),FRAME_SHIFT(HIGH\|\|tgt/\|C117\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),FRAME_SHIFT(HIGH\|\|tgt/\|C117\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON);LOF=(ORF1ab\|GU280_gp01\|28\|0.11)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	153 NC_045512.2 13451 . G A 139.0 min_af_0.050000 AF=0.002377;DP=6732;DP4=5314,1401,11,5;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4396T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4396T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4T\|12\|ORF1ab\|protein_coding\|CODING\|YP_009725312.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4T\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	154 NC_045512.2 13565 . T G 126.0 min_af_0.050000 AF=0.002191;DP=6845;DP4=1460,5365,11,6;SB=38;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTa/gGa\|V4434G\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTa/gGa\|V42G\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	155 NC_045512.2 13571 . G T 626.0 min_af_0.050000 AF=0.007100;DP=6901;DP4=1486,5364,11,39;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G4436V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G44V\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	156 NC_045512.2 13616 . A G 107.0 min_af_0.050000 AF=0.001711;DP=10521;DP4=1399,9100,2,17;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K4451R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K59R\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	157 NC_045512.2 13836 . G A 153.0 min_af_0.050000 AF=0.000927;DP=34520;DP4=6715,27756,10,24;SB=7;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|agG/agA\|R4524\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),SYNONYMOUS_CODING(LOW\|SILENT\|agG/agA\|R132\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	158 NC_045512.2 13966 . G A 87.0 min_af_0.050000 AF=0.001010;DP=15845;DP4=13708,2113,14,3;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A4568T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A176T\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	159 NC_045512.2 13982 . G A 361.0 min_af_0.050000 AF=0.003139;DP=13381;DP4=10986,2346,23,20;SB=49;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R4573H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R181H\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	160 NC_045512.2 13988 . G A 99.0 min_af_0.050000 AF=0.001272;DP=12581;DP4=10082,2474,15,2;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R4575H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R183H\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	161 NC_045512.2 14408 . C T 33427.0 PASS AF=0.987778;DP=900;DP4=0,3,371,524;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cTt\|P4715L\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cTt\|P323L\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	162 NC_045512.2 14624 . G A 100.0 min_af_0.050000 AF=0.001576;DP=8885;DP4=6982,1886,13,3;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C4787Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C395Y\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	163 NC_045512.2 14653 . G T 110.0 min_af_0.050000 AF=0.001667;DP=8999;DP4=6980,2002,13,3;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtt/Ttt\|V4797F\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtt/Ttt\|V405F\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	164 NC_045512.2 14848 . CTATTTG C 71.0 min_af_0.050000 AF=0.000856;DP=8180;DP4=1608,6620,1,6;HRUN=1;SB=0;INDEL;EFF=CODON_DELETION(MODERATE\|\|tttgta/\|FV4863\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C\|INFO_REALIGN_3_PRIME),CODON_DELETION(MODERATE\|\|tttgta/\|FV471\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	165 NC_045512.2 15016 . G T 479.0 min_af_0.050000 AF=0.014688;DP=2451;DP4=1905,509,26,10;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Tca\|A4918S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Tca\|A526S\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	166 NC_045512.2 15128 . G A 80.0 min_af_0.050000 AF=0.003114;DP=2890;DP4=662,2204,3,10;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGt/tAt\|C4955Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGt/tAt\|C563Y\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	167 NC_045512.2 15157 . CA C 88.0 min_af_0.050000 AF=0.002424;DP=2888;DP4=652,2250,1,6;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaa/\|K4966\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K574\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	168 NC_045512.2 15279 . C T 202.0 min_af_0.050000 AF=0.002300;DP=10437;DP4=8333,2073,23,6;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|caC/caT\|H5005\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),SYNONYMOUS_CODING(LOW\|SILENT\|caC/caT\|H613\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	169 NC_045512.2 15324 . C T 49314.0 PASS AF=0.989112;DP=8817;DP4=1,1,6751,2058;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N5020\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N628\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	170 NC_045512.2 15587 . C T 109.0 min_af_0.050000 AF=0.000895;DP=27936;DP4=22151,5748,24,5;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gTc\|A5108V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gTc\|A716V\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	171 NC_045512.2 15602 . G A 148.0 min_af_0.050000 AF=0.001137;DP=28150;DP4=22229,5881,25,8;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R5113H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R721H\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	172 NC_045512.2 15610 . C T 81.0 min_af_0.050000 AF=0.000720;DP=27789;DP4=22076,5684,17,5;SB=1;EFF=STOP_GAINED(HIGH\|NONSENSE\|Caa/Taa\|Q5116\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),STOP_GAINED(HIGH\|NONSENSE\|Caa/Taa\|Q724\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	173 NC_045512.2 15628 . T C 97.0 min_af_0.050000 AF=0.000810;DP=27146;DP4=21748,5352,23,2;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgt/Cgt\|C5122R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgt/Cgt\|C730R\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	174 NC_045512.2 15673 . T G 138.0 min_af_0.050000;sb_fdr AF=0.002916;DP=9601;DP4=4640,4919,28,2;SB=65;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttt/Gtt\|F5137V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttt/Gtt\|F745V\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	175 NC_045512.2 15682 . T A 3086.0 min_af_0.050000 AF=0.019651;DP=9567;DP4=4771,4605,113,78;SB=16;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tat/Aat\|Y5140N\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tat/Aat\|Y748N\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	176 NC_045512.2 15685 . T A 3070.0 min_af_0.050000 AF=0.019492;DP=9645;DP4=4821,4634,112,78;SB=14;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttg/Atg\|L5141M\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttg/Atg\|L749M\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	177 NC_045512.2 15752 . C T 130.0 min_af_0.050000 AF=0.000956;DP=27194;DP4=5580,21576,5,26;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A5163V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A771V\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	178 NC_045512.2 15761 . G C 111.0 min_af_0.050000 AF=0.000914;DP=27359;DP4=5595,21715,7,21;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gCt\|G5166A\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gCt\|G774A\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	179 NC_045512.2 15784 . T TGAC 140.0 min_af_0.050000 AF=0.000612;DP=27777;DP4=5858,22028,5,12;HRUN=3;SB=4;INDEL;EFF=STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION(HIGH\|\|ttt/tGACtt\|F5174L\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|TGAC),STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION(HIGH\|\|ttt/tGACtt\|F782L\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|TGAC\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	180 NC_045512.2 15788 . AGTC A 140.0 min_af_0.050000 AF=0.000617;DP=27575;DP4=5626,21971,5,12;HRUN=1;SB=4;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|aagtca/aaa\|KS5175K\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|aagtca/aaa\|KS783K\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	181 NC_045512.2 15959 . C G 86.0 min_af_0.050000 AF=0.001104;DP=16300;DP4=12597,3665,14,5;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gGc\|A5232G\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gGc\|A840G\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	182 NC_045512.2 16073 . C T 104.0 min_af_0.050000 AF=0.001226;DP=15503;DP4=3133,12344,4,17;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A5270V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A878V\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	183 NC_045512.2 16386 . C T 95.0 min_af_0.050000 AF=0.006667;DP=1050;DP4=288,752,3,4;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C5374\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C50\|600\|ORF1ab\|protein_coding\|CODING\|YP_009725308.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	184 NC_045512.2 16800 . TA T 143.0 min_af_0.050000 AF=0.001533;DP=9133;DP4=7069,2052,12,2;HRUN=5;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aac/\|N5514\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aac/\|N190\|600\|ORF1ab\|protein_coding\|CODING\|YP_009725308.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	185 NC_045512.2 16949 . C T 101.0 min_af_0.050000 AF=0.003001;DP=3665;DP4=1707,1944,5,7;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cTt\|P5562L\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cTt\|P238L\|600\|ORF1ab\|protein_coding\|CODING\|YP_009725308.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	186 NC_045512.2 17035 . G A 90.0 min_af_0.050000 AF=0.001462;DP=8890;DP4=2031,6845,4,9;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A5591T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A267T\|600\|ORF1ab\|protein_coding\|CODING\|YP_009725308.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	187 NC_045512.2 17140 . G A 85.0 min_af_0.050000 AF=0.001241;DP=12090;DP4=9631,2440,12,4;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A5626T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A302T\|600\|ORF1ab\|protein_coding\|CODING\|YP_009725308.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	188 NC_045512.2 17144 . G A 117.0 min_af_0.050000 AF=0.001660;DP=12046;DP4=9540,2484,14,6;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R5627H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R303H\|600\|ORF1ab\|protein_coding\|CODING\|YP_009725308.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	189 NC_045512.2 17200 . TTAAAA T 188.0 min_af_0.050000 AF=0.001439;DP=11115;DP4=8773,2405,10,6;HRUN=2;SB=8;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaatat/\|KY5647\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaatat/\|KY323\|600\|ORF1ab\|protein_coding\|CODING\|YP_009725308.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	190 NC_045512.2 17339 . C T 81.0 min_af_0.050000 AF=0.001134;DP=12349;DP4=3036,9291,3,11;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A5692V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A368V\|600\|ORF1ab\|protein_coding\|CODING\|YP_009725308.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	191 NC_045512.2 17808 . G T 151.0 min_af_0.050000 AF=0.009872;DP=1013;DP4=826,177,9,1;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaG/aaT\|K5848N\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaG/aaT\|K524N\|600\|ORF1ab\|protein_coding\|CODING\|YP_009725308.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	192 NC_045512.2 18641 . T A 530.0 min_af_0.050000 AF=0.003382;DP=15673;DP4=11486,4127,27,27;SB=35;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTa/aAa\|I6126K\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTa/aAa\|I201K\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	193 NC_045512.2 18687 . CT C 156.0 min_af_0.050000 AF=0.001118;DP=14308;DP4=11344,2973,10,6;HRUN=4;SB=9;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tcc/\|S6143\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tcc/\|S218\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	194 NC_045512.2 18715 . T C 109.0 min_af_0.050000 AF=0.001262;DP=14258;DP4=11215,3019,14,6;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgt/Cgt\|C6151R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgt/Cgt\|C226R\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	195 NC_045512.2 18736 . TTTGA T 79.0 min_af_0.050000 AF=0.000635;DP=14178;DP4=11228,2983,7,2;HRUN=3;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gattac/\|DY6159\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|gattac/\|DY234\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	196 NC_045512.2 19172 . C T 142.0 min_af_0.050000 AF=0.001388;DP=15855;DP4=3216,12613,7,16;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T6303I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T378I\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	197 NC_045512.2 19188 . AT A 219.0 min_af_0.050000 AF=0.001329;DP=15807;DP4=3164,12631,6,15;HRUN=4;SB=3;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tgg/\|W6310\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tgg/\|W385\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	198 NC_045512.2 19199 . G A 96.0 min_af_0.050000 AF=0.001074;DP=15832;DP4=3167,12645,6,13;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C6312Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C387Y\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	199 NC_045512.2 19452 . T A 120.0 min_af_0.050000 AF=0.030612;DP=196;DP4=112,78,1,5;SB=10;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcA\|A6396\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcA\|A471\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	200 NC_045512.2 19468 . T A 100.0 min_af_0.050000 AF=0.013605;DP=441;DP4=123,312,3,3;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgc/Agc\|C6402S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgc/Agc\|C477S\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	201 NC_045512.2 19679 . G T 305.0 min_af_0.050000 AF=0.002634;DP=14427;DP4=11435,2935,30,8;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G6472V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G20V\|345\|ORF1ab\|protein_coding\|CODING\|YP_009725310.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	202 NC_045512.2 19821 . A G 97.0 min_af_0.050000 AF=0.001163;DP=13752;DP4=2628,11106,4,12;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccA/ccG\|P6519\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G),SYNONYMOUS_CODING(LOW\|SILENT\|ccA/ccG\|P67\|345\|ORF1ab\|protein_coding\|CODING\|YP_009725310.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	203 NC_045512.2 19870 . G A 130.0 min_af_0.050000 AF=0.001286;DP=16326;DP4=4782,11514,9,15;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtg/Atg\|V6536M\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtg/Atg\|V84M\|345\|ORF1ab\|protein_coding\|CODING\|YP_009725310.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	204 NC_045512.2 20317 . G T 81.0 min_af_0.050000 AF=0.006459;DP=929;DP4=629,294,5,1;SB=1;EFF=STOP_GAINED(HIGH\|NONSENSE\|Gaa/Taa\|E6685\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),STOP_GAINED(HIGH\|NONSENSE\|Gaa/Taa\|E233\|345\|ORF1ab\|protein_coding\|CODING\|YP_009725310.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	205 NC_045512.2 20839 . G A 95.0 min_af_0.050000 AF=0.000824;DP=25489;DP4=12509,12947,18,8;SB=13;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gta/Ata\|V6859I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gta/Ata\|V61I\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	206 NC_045512.2 20926 . C T 100.0 min_af_0.050000 AF=0.001257;DP=13527;DP4=10536,2964,13,8;SB=9;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cct/Tct\|P6888S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cct/Tct\|P90S\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	207 NC_045512.2 21054 . C T 135.0 min_af_0.050000 AF=0.001728;DP=12156;DP4=2309,9817,5,20;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|taC/taT\|Y6930\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),SYNONYMOUS_CODING(LOW\|SILENT\|taC/taT\|Y132\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	208 NC_045512.2 21066 . TA T 181.0 min_af_0.050000 AF=0.001502;DP=11985;DP4=2225,9771,3,15;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aat/\|N6936\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aat/\|N138\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.04)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	209 NC_045512.2 21634 . A AC 95.0 min_af_0.050000 AF=0.003008;DP=2327;DP4=624,1696,2,5;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|cct/ccCt\|P26P?\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|AC\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	210 NC_045512.2 22573 . T C 83.0 min_af_0.050000 AF=0.001085;DP=13831;DP4=11344,2466,18,2;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P337\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	211 NC_045512.2 22583 . GT G 209.0 min_af_0.050000 AF=0.001487;DP=14121;DP4=11424,2680,17,4;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F342\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(S\|GU280_gp02\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	212 NC_045512.2 22591 . C T 138.0 min_af_0.050000 AF=0.001470;DP=14282;DP4=11424,2830,18,7;SB=5;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N343\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	213 NC_045512.2 22639 . C T 94.0 min_af_0.050000 AF=0.001122;DP=14257;DP4=11431,2802,13,4;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|agC/agT\|S359\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	214 NC_045512.2 22643 . T A 465.0 min_af_0.050000 AF=0.003306;DP=14216;DP4=11344,2812,33,14;SB=10;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgt/Agt\|C361S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	215 NC_045512.2 22644 . G C 442.0 min_af_0.050000 AF=0.003220;DP=14284;DP4=11347,2879,32,14;SB=10;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGt/tCt\|C361S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	216 NC_045512.2 22645 . T A 374.0 min_af_0.050000 AF=0.003012;DP=14276;DP4=11332,2884,35,14;SB=8;EFF=STOP_GAINED(HIGH\|NONSENSE\|tgT/tgA\|C361*\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	217 NC_045512.2 22852 . A G 87.0 min_af_0.050000 AF=0.001083;DP=13851;DP4=3408,10413,2,15;SB=5;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acA/acG\|T430\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	218 NC_045512.2 22899 . G T 187.0 min_af_0.050000 AF=0.004985;DP=3410;DP4=2519,874,10,7;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G446V\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	219 NC_045512.2 22900 . T A 595.0 min_af_0.050000 AF=0.012915;DP=3252;DP4=2361,843,7,37;SB=145;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ggT/ggA\|G446\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	220 NC_045512.2 23132 . GT G 293.0 min_af_0.050000 AF=0.004197;DP=4289;DP4=758,3519,3,15;HRUN=3;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tgt/\|C525\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(S\|GU280_gp02\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	221 NC_045512.2 23202 . C T 84.0 min_af_0.050000 AF=0.000879;DP=19331;DP4=14178,5113,15,7;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T547I\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	222 NC_045512.2 23209 . A G 118.0 min_af_0.050000 AF=0.001076;DP=19518;DP4=14128,5360,16,7;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acA/acG\|T549\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	223 NC_045512.2 23389 . T C 89.0 min_af_0.050000 AF=0.000975;DP=17437;DP4=3751,13662,3,14;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A609\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	224 NC_045512.2 23403 . A G 49314.0 PASS AF=0.991866;DP=17334;DP4=2,4,3724,13599;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gGt\|D614G\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	225 NC_045512.2 23412 . G A 80.0 min_af_0.050000 AF=0.000918;DP=17437;DP4=3771,13642,2,16;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C617Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	226 NC_045512.2 23417 . G T 181.0 min_af_0.050000 AF=0.001558;DP=17328;DP4=3727,13562,4,24;SB=3;EFF=STOP_GAINED(HIGH\|NONSENSE\|Gaa/Taa\|E619*\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	227 NC_045512.2 23425 . T C 88.0 min_af_0.050000 AF=0.000985;DP=17263;DP4=3692,13549,3,15;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P621\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	228 NC_045512.2 23439 . C T 100.0 min_af_0.050000 AF=0.001053;DP=17099;DP4=3589,13484,4,14;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A626V\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	229 NC_045512.2 23462 . C T 126.0 min_af_0.050000 AF=0.001338;DP=17185;DP4=3035,14116,6,20;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cgt/Tgt\|R634C\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	230 NC_045512.2 23493 . A G 90.0 min_af_0.050000 AF=0.000907;DP=20942;DP4=6938,13963,23,16;SB=29;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAa/cGa\|Q644R\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	231 NC_045512.2 23552 . ATACCCATTGGTGCAGGTATATGCGCTAGT A 145.0 min_af_0.050000 AF=0.001893;DP=5811;DP4=4532,1270,7,4;HRUN=1;SB=5;INDEL;EFF=FRAME_SHIFT(HIGH\|\|cccattggtgcaggtatatgcgctagttat/\|PIGAGICASY665\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A\|INFO_REALIGN_3_PRIME);LOF=(S\|GU280_gp02\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	232 NC_045512.2 23568 . GTA G 66.0 min_af_0.050000 AF=0.001026;DP=5846;DP4=4545,1316,5,1;HRUN=1;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|atatgc/\|IC670\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(S\|GU280_gp02\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	233 NC_045512.2 23616 . G A 89.0 min_af_0.050000 AF=0.003866;DP=2328;DP4=1117,1202,1,8;SB=13;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R685H\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	234 NC_045512.2 24182 . A C 147.0 min_af_0.050000 AF=0.020997;DP=381;DP4=276,97,4,4;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Act/Cct\|T874P\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	235 NC_045512.2 24728 . G A 82.0 min_af_0.050000 AF=0.000723;DP=27644;DP4=22524,5093,18,2;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1056T\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	236 NC_045512.2 24729 . C T 323.0 min_af_0.050000 AF=0.001663;DP=27657;DP4=22503,5095,36,12;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A1056V\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	237 NC_045512.2 24752 . C T 95.0 min_af_0.050000 AF=0.000795;DP=28914;DP4=22721,6154,23,6;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H1064Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	238 NC_045512.2 24770 . G A 136.0 min_af_0.050000 AF=0.000946;DP=28532;DP4=22916,5573,25,4;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1070T\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	239 NC_045512.2 24793 . T C 92.0 min_af_0.050000 AF=0.000755;DP=29133;DP4=22850,6250,21,5;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acT/acC\|T1077\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	240 NC_045512.2 24794 . G A 113.0 min_af_0.050000 AF=0.000855;DP=29231;DP4=22852,6337,22,6;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A1078T\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	241 NC_045512.2 24799 . T C 150.0 min_af_0.050000 AF=0.000995;DP=29150;DP4=22833,6271,29,7;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P1079\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	242 NC_045512.2 24800 . G A 114.0 min_af_0.050000 AF=0.000854;DP=29273;DP4=22886,6348,22,4;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A1080T\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	243 NC_045512.2 24933 . G T 1263.0 min_af_0.050000 AF=0.004328;DP=27725;DP4=5738,21835,28,110;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G1124V\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	244 NC_045512.2 24939 . G A 96.0 min_af_0.050000 AF=0.000787;DP=27943;DP4=5902,22003,3,25;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGt/tAt\|C1126Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	245 NC_045512.2 24942 . A T 756.0 min_af_0.050000 AF=0.002979;DP=27862;DP4=5854,21905,11,79;SB=14;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gTt\|D1127V\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	246 NC_045512.2 24966 . A T 102.0 min_af_0.050000 AF=0.000825;DP=27895;DP4=6029,21831,14,11;SB=37;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aTc\|N1135I\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	247 NC_045512.2 24985 . G A 81.0 min_af_0.050000 AF=0.000720;DP=27773;DP4=5873,21863,3,23;SB=4;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttG/ttA\|L1141\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	248 NC_045512.2 24986 . C T 113.0 min_af_0.050000 AF=0.000866;DP=27711;DP4=5859,21820,2,25;SB=10;EFF=STOP_GAINED(HIGH\|NONSENSE\|Caa/Taa\|Q1142*\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	249 NC_045512.2 25007 . A G 87.0 min_af_0.050000 AF=0.000720;DP=27762;DP4=6070,21661,5,19;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aag/Gag\|K1149E\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	250 NC_045512.2 25049 . G T 81.0 min_af_0.050000 AF=0.000780;DP=25627;DP4=4432,21148,5,26;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Tat\|D1163Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	251 NC_045512.2 25345 . T C 133.0 min_af_0.050000 AF=0.001541;DP=12330;DP4=9912,2395,16,4;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S1261\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	252 NC_045512.2 25452 . C T 83.0 min_af_0.050000 AF=0.002103;DP=4754;DP4=2545,2198,5,6;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|atC/atT\|I20\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	253 NC_045512.2 25527 . G A 91.0 min_af_0.050000 AF=0.001163;DP=13756;DP4=2772,10956,6,12;SB=6;EFF=STOP_GAINED(HIGH\|NONSENSE\|tgG/tgA\|W45*\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	254 NC_045512.2 25543 . G A 191.0 min_af_0.050000 AF=0.001876;DP=13859;DP4=2806,11016,10,18;SB=12;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A51T\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	255 NC_045512.2 25785 . G T 1368.0 PASS AF=0.078772;DP=749;DP4=366,323,30,29;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tgG/tgT\|W131C\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	256 NC_045512.2 25963 . G A 80.0 min_af_0.050000 AF=0.000889;DP=20248;DP4=15478,4744,17,5;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gaa/Aaa\|E191K\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	257 NC_045512.2 26042 . C T 2421.0 min_af_0.050000 AF=0.008776;DP=20282;DP4=15383,4712,142,41;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T217I\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	258 NC_045512.2 26044 . C G 2272.0 min_af_0.050000 AF=0.008352;DP=20115;DP4=15297,4638,134,37;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q218E\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	259 NC_045512.2 26046 . A G 2419.0 min_af_0.050000 AF=0.008854;DP=20216;DP4=15316,4716,140,41;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|caA/caG\|Q218\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	260 NC_045512.2 26054 . C T 177.0 min_af_0.050000 AF=0.001501;DP=19993;DP4=15345,4610,21,10;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T221I\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	261 NC_045512.2 26057 . A C 149.0 min_af_0.050000 AF=0.002423;DP=11556;DP4=6976,4538,18,14;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAc/gCc\|D222A\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	262 NC_045512.2 26089 . T A 308.0 min_af_0.050000 AF=0.004038;DP=7430;DP4=3377,4013,7,26;SB=23;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Aac\|Y233N\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	263 NC_045512.2 26103 . T A 739.0 min_af_0.050000;sb_fdr AF=0.007772;DP=7591;DP4=3673,3855,56,5;SB=118;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gtT/gtA\|V237\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	264 NC_045512.2 26141 . A T 370.0 min_af_0.050000 AF=0.004848;DP=7425;DP4=4276,3106,13,23;SB=19;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAc/gTc\|D250V\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	265 NC_045512.2 26194 . A T 163.0 min_af_0.050000 AF=0.001439;DP=20158;DP4=4634,15473,14,19;SB=19;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Acg/Tcg\|T268S\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	266 NC_045512.2 26209 . G A 120.0 min_af_0.050000 AF=0.001098;DP=20035;DP4=4361,15644,4,20;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtg/Atg\|V273M\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	267 NC_045512.2 26444 . C T 133.0 min_af_0.050000 AF=0.009395;DP=958;DP4=226,723,2,7;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCt/tTt\|S67F\|75\|E\|protein_coding\|CODING\|GU280_gp04\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	268 NC_045512.2 26542 . C A 294.0 min_af_0.050000 AF=0.005601;DP=4285;DP4=300,3952,0,24;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aAt\|T7N\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	269 NC_045512.2 26545 . T G 596.0 min_af_0.050000 AF=0.002632;DP=27734;DP4=23608,4048,50,25;SB=43;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTt/aGt\|I8S\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	270 NC_045512.2 26554 . A G 231.0 min_af_0.050000 AF=0.001343;DP=28305;DP4=23755,4496,36,6;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAa/gGa\|E11G\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	271 NC_045512.2 26566 . A G 106.0 min_af_0.050000 AF=0.001211;DP=28909;DP4=23882,4962,34,6;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K15R\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	272 NC_045512.2 26695 . G C 248.0 min_af_0.050000 AF=0.003064;DP=9137;DP4=3972,5129,3,25;SB=34;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGg/tCg\|W58S\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	273 NC_045512.2 26769 . G A 113.0 min_af_0.050000 AF=0.000875;DP=28587;DP4=5339,23210,6,24;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A83T\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	274 NC_045512.2 26774 . GGCTTGTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCTTCTTTCAGACTGTTT G 115.0 min_af_0.050000 AF=0.000525;DP=28594;DP4=5378,23236,0,15;HRUN=2;SB=10;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|gcttgtcttgtaggcttgatgtggctcagctacttcattgcttctttcagactgtttgcg/gcg\|ACLVGLMWLSYFIASFRLFA85A\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	275 NC_045512.2 26774 . GGCTTGTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCTTCTTTCAGACTGTT G 83.0 min_af_0.050000 AF=0.000420;DP=28594;DP4=5378,23236,0,12;HRUN=2;SB=8;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gcttgtcttgtaggcttgatgtggctcagctacttcattgcttctttcagactgttt/\|ACLVGLMWLSYFIASFRLF85\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G);LOF=(M\|GU280_gp05\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	276 NC_045512.2 26775 . GCTTGTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCTT G 351.0 min_af_0.050000 AF=0.001157;DP=28524;DP4=5373,23234,4,29;HRUN=1;SB=2;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|tgtcttgtaggcttgatgtggctcagctacttcattgcttctttc/ttc\|CLVGLMWLSYFIASF86F\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	277 NC_045512.2 26779 . GTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCT G 869.0 min_af_0.050000 AF=0.002271;DP=28626;DP4=5385,23256,8,57;HRUN=1;SB=6;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gtaggcttgatgtggctcagctacttcattgcttctttc/\|VGLMWLSYFIASF88\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(M\|GU280_gp05\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	278 NC_045512.2 26786 . AGGCTTGATGTGGCTCAGCTACTTCATTGCTTCTT A 940.0 min_af_0.050000 AF=0.002413;DP=28595;DP4=5340,23218,9,60;HRUN=2;SB=5;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ggcttgatgtggctcagctacttcattgcttctttc/\|GLMWLSYFIASF89\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A);LOF=(M\|GU280_gp05\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	279 NC_045512.2 26798 . G A 105.0 min_af_0.050000 AF=0.000868;DP=28812;DP4=5462,23064,5,20;SB=0;EFF=STOP_GAINED(HIGH\|NONSENSE\|tgG/tgA\|W92*\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	280 NC_045512.2 26839 . C T 208.0 min_af_0.050000 AF=0.001347;DP=28947;DP4=4990,23908,12,31;SB=11;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T106M\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	281 NC_045512.2 26885 . C T 108.0 min_af_0.050000 AF=0.000780;DP=42334;DP4=17203,25082,14,21;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N121\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	282 NC_045512.2 26888 . G A 81.0 min_af_0.050000 AF=0.000638;DP=42299;DP4=17150,25099,12,22;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gtG/gtA\|V122\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	283 NC_045512.2 26889 . C T 167.0 min_af_0.050000 AF=0.000971;DP=42214;DP4=17062,25099,15,30;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cca/Tca\|P123S\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	284 NC_045512.2 27097 . GT G 88.0 min_af_0.050000 AF=0.000583;DP=20569;DP4=4890,15748,3,9;HRUN=4;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F193\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(M\|GU280_gp05\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	285 NC_045512.2 27131 . CTATAAAT C 110.0 min_af_0.050000 AF=0.000623;DP=20859;DP4=5002,15909,3,10;HRUN=1;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tataaatta/\|YKL204\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|C\|INFO_REALIGN_3_PRIME);LOF=(M\|GU280_gp05\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	286 NC_045512.2 27133 . ATAAATT A 226.0 min_af_0.050000 AF=0.001049;DP=20965;DP4=5016,15929,9,13;HRUN=1;SB=11;INDEL;EFF=STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION(HIGH\|\|tataaatta/taa\|YKL204*\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	287 NC_045512.2 27190 . AAGTGACAACAGATGTTTCATCTCGTTGACTT A 97.0 min_af_0.050000 AF=0.000617;DP=24308;DP4=20706,18252,14,1;HRUN=2;SB=28;INDEL;EFF=GENE_FUSION(HIGH\|\|\|\|\|M+ORF6\|\|CODING\|\|\|A),FRAME_SHIFT+STOP_LOST+SPLICE_SITE_REGION(HIGH\|\|taa/\|*223\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A),FRAME_SHIFT+START_LOST(HIGH\|\|atgtttcatctcgttgacttt/\|MFHLVDF1\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|A);LOF=(ORF6\|GU280_gp06\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	288 NC_045512.2 27214 . G A 104.0 min_af_0.050000 AF=0.001051;DP=22836;DP4=18857,3927,21,5;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtt/Att\|V5I\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	289 NC_045512.2 27285 . T A 292.0 min_af_0.050000 AF=0.001761;DP=22714;DP4=18427,4236,40,2;SB=17;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaT/aaA\|N28K\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	290 NC_045512.2 27335 . C T 588.0 min_af_0.050000 AF=0.006257;DP=7831;DP4=4278,3502,31,18;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T45I\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	291 NC_045512.2 27344 . A T 1040.0 min_af_0.050000 AF=0.009986;DP=7811;DP4=4348,3381,53,26;SB=11;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAa/aTa\|K48I\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	292 NC_045512.2 27345 . A T 1026.0 min_af_0.050000 AF=0.009985;DP=7812;DP4=4358,3374,52,26;SB=10;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaA/aaT\|K48N\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	293 NC_045512.2 27354 . A G 1255.0 min_af_0.050000 AF=0.011517;DP=7641;DP4=4387,3162,62,27;SB=15;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|caA/caG\|Q51\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	294 NC_045512.2 27720 . TATA T 301.0 PASS AF=0.056701;DP=194;DP4=56,129,6,5;HRUN=1;SB=9;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ataaca/aca\|IT110T\|121\|ORF7a\|protein_coding\|CODING\|GU280_gp07\|1\|T\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	295 NC_045512.2 28019 . T C 80.0 min_af_0.050000 AF=0.006079;DP=987;DP4=283,698,0,6;SB=7;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|taT/taC\|Y42\|121\|ORF8\|protein_coding\|CODING\|GU280_gp09\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	296 NC_045512.2 28148 . T C 122.0 min_af_0.050000 AF=0.001204;DP=19103;DP4=16383,2676,25,3;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P85\|121\|ORF8\|protein_coding\|CODING\|GU280_gp09\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	297 NC_045512.2 28195 . G A 84.0 min_af_0.050000 AF=0.000961;DP=19771;DP4=16165,3583,15,4;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R101H\|121\|ORF8\|protein_coding\|CODING\|GU280_gp09\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	298 NC_045512.2 28232 . C T 88.0 min_af_0.050000 AF=0.000926;DP=19437;DP4=16091,3321,16,2;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D113\|121\|ORF8\|protein_coding\|CODING\|GU280_gp09\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	299 NC_045512.2 28326 . G T 189.0 min_af_0.050000 AF=0.001431;DP=20959;DP4=4181,16743,5,28;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G18V\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	300 NC_045512.2 28380 . G A 100.0 min_af_0.050000 AF=0.000983;DP=20349;DP4=3516,16795,6,21;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGa/cAa\|R36Q\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	301 NC_045512.2 28406 . TTACCCAATA T 99.0 min_af_0.050000 AF=0.000588;DP=20419;DP4=3137,17295,0,12;HRUN=3;SB=6;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ttacccaataat/tat\|LPNN45Y\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	302 NC_045512.2 28436 . G A 96.0 min_af_0.050000 AF=0.000921;DP=22792;DP4=5504,17257,4,21;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A55T\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	303 NC_045512.2 28714 . C T 124.0 min_af_0.050000 AF=0.001581;DP=12018;DP4=8559,3430,15,9;SB=4;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ggC/ggT\|G147\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	304 NC_045512.2 28801 . C A 85.0 min_af_0.050000 AF=0.001339;DP=11202;DP4=8430,2743,10,10;SB=18;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|agC/agA\|S176R\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	305 NC_045512.2 28876 . C T 84.0 min_af_0.050000 AF=0.002074;DP=5303;DP4=2390,2902,5,6;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|agC/agT\|S201\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	306 NC_045512.2 28987 . CCAA C 414.0 min_af_0.050000 AF=0.002606;DP=11513;DP4=2411,9107,7,23;HRUN=2;SB=0;INDEL;EFF=CODON_DELETION(MODERATE\|\|caa/\|Q242\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	307 NC_045512.2 29027 . G T 203.0 min_af_0.050000 AF=0.001223;DP=29446;DP4=18810,10572,30,14;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Tct\|A252S\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	308 NC_045512.2 29029 . T C 1891.0 min_af_0.050000 AF=0.005500;DP=29452;DP4=18773,10482,91,92;SB=41;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A252\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	309 NC_045512.2 29039 . A T 6489.0 min_af_0.050000 AF=0.014020;DP=29815;DP4=18712,10662,202,224;SB=108;EFF=STOP_GAINED(HIGH\|NONSENSE\|Aag/Tag\|K256*\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	310 NC_045512.2 29049 . G A 590.0 min_af_0.050000 AF=0.003061;DP=23194;DP4=18861,4251,67,9;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGg/cAg\|R259Q\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	311 NC_045512.2 29067 . CTAAAGCATACAATG C 141.0 min_af_0.050000 AF=0.000696;DP=22988;DP4=18360,4666,14,2;HRUN=1;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaagcatacaatgtaaca/\|KAYNVT266\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C\|INFO_REALIGN_3_PRIME);LOF=(N\|GU280_gp10\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	312 NC_045512.2 29095 . C T 83.0 min_af_0.050000 AF=0.000864;DP=23152;DP4=18350,4772,17,5;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F274\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	313 NC_045512.2 29110 . A G 84.0 min_af_0.050000 AF=0.000869;DP=23018;DP4=18316,4667,14,8;SB=9;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccA/ccG\|P279\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	314 NC_045512.2 29114 . C T 94.0 min_af_0.050000 AF=0.000914;DP=22969;DP4=18282,4644,17,7;SB=5;EFF=STOP_GAINED(HIGH\|NONSENSE\|Caa/Taa\|Q281*\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	315 NC_045512.2 29187 . C T 173.0 min_af_0.050000 AF=0.002658;DP=8276;DP4=4583,3668,9,13;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A305V\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	316 NC_045512.2 29188 . A G 140.0 min_af_0.050000 AF=0.002202;DP=8175;DP4=4555,3592,7,14;SB=13;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcA/gcG\|A305\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	317 NC_045512.2 29195 . GC G 376.0 min_af_0.050000 AF=0.003461;DP=8089;DP4=4612,3478,15,13;HRUN=5;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ccc/\|P309\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(N\|GU280_gp10\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	318 NC_045512.2 29227 . G T 10969.0 min_af_0.050000 AF=0.028346;DP=22155;DP4=4416,17071,181,465;SB=50;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tcG/tcT\|S318\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	319 NC_045512.2 29229 . G A 85.0 min_af_0.050000 AF=0.000857;DP=23341;DP4=4584,18726,4,21;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R319H\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	320 NC_045512.2 29247 . C T 127.0 min_af_0.050000 AF=0.001148;DP=23526;DP4=4650,18843,5,23;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T325I\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	321 NC_045512.2 29254 . G A 281.0 min_af_0.050000 AF=0.001700;DP=23530;DP4=4654,18818,10,39;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tcG/tcA\|S327\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	322 NC_045512.2 29259 . C T 85.0 min_af_0.050000 AF=0.000897;DP=23401;DP4=4563,18811,7,16;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T329M\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	323 NC_045512.2 29279 . G A 136.0 min_af_0.050000 AF=0.001077;DP=23215;DP4=4317,18858,4,26;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A336T\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	324 NC_045512.2 29280 . C T 85.0 min_af_0.050000 AF=0.000821;DP=23150;DP4=4303,18812,2,21;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gTc\|A336V\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	325 NC_045512.2 29287 . A T 94.0 min_af_0.050000 AF=0.000906;DP=23185;DP4=4260,18897,3,19;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaA/aaT\|K338N\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	326 NC_045512.2 29348 . G A 93.0 min_af_0.050000 AF=0.000890;DP=22464;DP4=3870,18549,4,17;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A359T\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	327 NC_045512.2 29377 . TA T 111.0 min_af_0.050000 AF=0.003745;DP=2136;DP4=1755,642,5,3;HRUN=5;SB=3;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aag/\|K370\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T\|INFO_REALIGN_3_PRIME);LOF=(N\|GU280_gp10\|1\|1.00)

Mercurial > repos > iuc > snpfreqplot

annotate test-data/1084592.vcf @ 3:3d0adeee3f2b draft default tip