snpfreqplot: test-data/1085445.vcf annotate

annotate test-data/1085445.vcf @ 3:3d0adeee3f2b draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit c062eb1cd00ce9d565f3e2f3b042b3dd90d78ce4"

author	iuc
date	Wed, 06 Jan 2021 10:55:53 +0000
parents	1062d6ad6503
children

rev	line source
0 1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	1 ##fileformat=VCFv4.0
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	2 ##fileDate=20201106
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	3 ##source=lofreq call --verbose --ref reference.fa --call-indels --min-cov 5 --max-depth 1000000 --min-bq 30 --min-alt-bq 30 --min-mq 20 --max-mq 255 --min-jq 0 --min-alt-jq 0 --def-alt-jq 0 --sig 0.0005 --bonf dynamic --no-default-filter --no-default-filter -r NC_045512.2:1-14951 -o /data/dnb03/galaxy_db/job_working_directory/012/246/12246263/tmp/lofreq2_call_parallel9r7g_vq5/0.vcf.gz reads.bam
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	4 ##reference=reference.fa
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	5 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw Depth">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	6 ##INFO=<ID=AF,Number=1,Type=Float,Description="Allele Frequency">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	7 ##INFO=<ID=SB,Number=1,Type=Integer,Description="Phred-scaled strand bias at this position">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	8 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="Counts for ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	9 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	10 ##INFO=<ID=CONSVAR,Number=0,Type=Flag,Description="Indicates that the variant is a consensus variant (as opposed to a low frequency variant).">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	11 ##INFO=<ID=HRUN,Number=1,Type=Integer,Description="Homopolymer length to the right of report indel position">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	12 ##FILTER=<ID=min_snvqual_77,Description="Minimum SNV Quality (Phred) 77">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	13 ##FILTER=<ID=min_indelqual_64,Description="Minimum Indel Quality (Phred) 64">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	14 ##FILTER=<ID=min_snvqual_81,Description="Minimum SNV Quality (Phred) 81">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	15 ##FILTER=<ID=min_indelqual_67,Description="Minimum Indel Quality (Phred) 67">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	16 ##FILTER=<ID=min_af_0.050000,Description="Minimum allele frequency 0.050000">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	17 ##FILTER=<ID=min_dp_5,Description="Minimum Coverage 5">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	18 ##FILTER=<ID=sb_fdr,Description="Strand-Bias Multiple Testing Correction: fdr corr. pvalue > 0.001000">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	19 ##SnpEffVersion="4.5covid19 (build 2020-04-15 22:26), by Pablo Cingolani"
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	20 ##SnpEffCmd="SnpEff -i vcf -o vcf -formatEff -classic -no-downstream -no-intergenic -no-upstream -stats /data/dnb03/galaxy_db/job_working_directory/012/246/12246330/outputs/galaxy_dataset_12727ea3-b173-47f2-a640-8b761bc6dbc9.dat NC_045512.2 /data/dnb03/galaxy_db/files/6/d/3/dataset_6d370681-43dc-4f44-ad01-c8a251815384.dat "
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	21 ##INFO=<ID=EFF,Number=.,Type=String,Description="Predicted effects for this variant.Format: 'Effect ( Effect_Impact \| Functional_Class \| Codon_Change \| Amino_Acid_Change\| Amino_Acid_length \| Gene_Name \| Transcript_BioType \| Gene_Coding \| Transcript_ID \| Exon_Rank \| Genotype [ \| ERRORS \| WARNINGS ] )' ">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	22 ##INFO=<ID=LOF,Number=.,Type=String,Description="Predicted loss of function effects for this variant. Format: 'Gene_Name \| Gene_ID \| Number_of_transcripts_in_gene \| Percent_of_transcripts_affected'">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	23 ##INFO=<ID=NMD,Number=.,Type=String,Description="Predicted nonsense mediated decay effects for this variant. Format: 'Gene_Name \| Gene_ID \| Number_of_transcripts_in_gene \| Percent_of_transcripts_affected'">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	24 #CHROM POS ID REF ALT QUAL FILTER INFO
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	25 NC_045512.2 241 . C T 49314.0 PASS AF=0.991443;DP=8180;DP4=12,7,3967,4190;SB=5
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	26 NC_045512.2 361 . A G 108.0 min_af_0.050000 AF=0.000916;DP=24022;DP4=10476,13511,11,15;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G32\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G32\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G32\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G32\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	27 NC_045512.2 385 . A G 83.0 min_af_0.050000 AF=0.000852;DP=23474;DP4=10007,13442,12,11;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tcA/tcG\|S40\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),SYNONYMOUS_CODING(LOW\|SILENT\|tcA/tcG\|S40\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tcA/tcG\|S40\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tcA/tcG\|S40\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	28 NC_045512.2 443 . GT G 392.0 min_af_0.050000 AF=0.002591;DP=11579;DP4=8340,3245,18,12;HRUN=4;SB=8;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttg/\|L61\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttg/\|L61\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttg/\|L61\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttg/\|L61\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	29 NC_045512.2 507 . ATGGTCATGTTATGGT A 231.0 min_af_0.050000 AF=0.002668;DP=5998;DP4=3100,2886,12,4;HRUN=1;SB=10;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ggtcatgttatggttgag/gag\|GHVMVE82E\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A\|INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ggtcatgttatggttgag/gag\|GHVMVE82E\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ggtcatgttatggttgag/gag\|GHVMVE82E\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ggtcatgttatggttgag/gag\|GHVMVE82E\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	30 NC_045512.2 509 . GGTCATGTTATGGTT G 80.0 min_af_0.050000 AF=0.001176;DP=5951;DP4=3124,2862,7,0;HRUN=2;SB=17;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ggtcatgttatggttgag/\|GHVMVE82\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ggtcatgttatggttgag/\|GHVMVE82\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ggtcatgttatggttgag/\|GHVMVE82\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ggtcatgttatggttgag/\|GHVMVE82\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	31 NC_045512.2 509 . GGTCATGTT G 95.0 min_af_0.050000 AF=0.001344;DP=5951;DP4=3124,2862,3,5;HRUN=2;SB=3;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ggtcatgtt/\|GHV82\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),FRAME_SHIFT(HIGH\|\|ggtcatgtt/\|GHV82\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON),FRAME_SHIFT(HIGH\|\|ggtcatgtt/\|GHV82\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON),FRAME_SHIFT(HIGH\|\|ggtcatgtt/\|GHV82\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	32 NC_045512.2 514 . TGTTATG T 95.0 min_af_0.050000 AF=0.001356;DP=5899;DP4=3143,2829,3,5;HRUN=1;SB=3;INDEL;EFF=CODON_DELETION(MODERATE\|\|atggtt/\|MV85\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T\|INFO_REALIGN_3_PRIME),CODON_DELETION(MODERATE\|\|atggtt/\|MV85\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|T\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),CODON_DELETION(MODERATE\|\|atggtt/\|MV85\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|T\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),CODON_DELETION(MODERATE\|\|atggtt/\|MV85\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	33 NC_045512.2 518 . ATGGTT A 79.0 min_af_0.050000 AF=0.001180;DP=5933;DP4=3134,2801,3,4;HRUN=1;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|atggtt/\|MV85\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),FRAME_SHIFT(HIGH\|\|atggtt/\|MV85\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON),FRAME_SHIFT(HIGH\|\|atggtt/\|MV85\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON),FRAME_SHIFT(HIGH\|\|atggtt/\|MV85\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	34 NC_045512.2 558 . G T 263.0 min_af_0.050000 AF=0.004646;DP=5596;DP4=3200,2366,18,9;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G98V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G98V\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|T\|WARNING_TRANSCRIPT_NO_STOP_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G98V\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|T\|WARNING_TRANSCRIPT_NO_STOP_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G98V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	35 NC_045512.2 601 . C T 114.0 min_af_0.050000 AF=0.001426;DP=12622;DP4=3414,9185,8,11;SB=7;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ggC/ggT\|G112\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|ggC/ggT\|G112\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|T\|WARNING_TRANSCRIPT_NO_STOP_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ggC/ggT\|G112\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|T\|WARNING_TRANSCRIPT_NO_STOP_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ggC/ggT\|G112\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	36 NC_045512.2 683 . CTA C 109.0 min_af_0.050000 AF=0.000870;DP=12642;DP4=3760,8924,6,5;HRUN=1;SB=10;INDEL;EFF=FRAME_SHIFT(HIGH\|\|cta/\|L140\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),FRAME_SHIFT(HIGH\|\|cta/\|L140\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|C\|WARNING_TRANSCRIPT_NO_STOP_CODON),FRAME_SHIFT(HIGH\|\|cta/\|L140\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|C\|WARNING_TRANSCRIPT_NO_STOP_CODON),FRAME_SHIFT(HIGH\|\|cta/\|L140\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	37 NC_045512.2 685 . AAAGTCATTT A 721.0 min_af_0.050000 AF=0.003737;DP=12578;DP4=3649,8908,17,30;HRUN=3;SB=4;INDEL;EFF=CODON_DELETION(MODERATE\|\|aagtcattt/\|KSF141\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),CODON_DELETION(MODERATE\|\|aagtcattt/\|KSF141\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON),CODON_DELETION(MODERATE\|\|aagtcattt/\|KSF141\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON),CODON_DELETION(MODERATE\|\|aagtcattt/\|KSF141\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	38 NC_045512.2 891 . G A 82.0 min_af_0.050000 AF=0.003096;DP=2584;DP4=700,1876,4,4;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gAt\|G209D\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gAt\|G209D\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gAt\|G29D\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gAt\|G29D\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	39 NC_045512.2 1001 . GA G 70.0 min_af_0.050000 AF=0.000521;DP=19212;DP4=14170,5050,7,3;HRUN=4;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aag/\|K247\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aag/\|K247\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aag/\|K67\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aag/\|K67\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.11)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	40 NC_045512.2 1011 . ATG A 158.0 min_af_0.050000 AF=0.000902;DP=17731;DP4=14217,3504,14,2;HRUN=1;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tatgaa/\|YE249\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),FRAME_SHIFT(HIGH\|\|tatgaa/\|YE249\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),FRAME_SHIFT(HIGH\|\|tatgaa/\|YE69\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),FRAME_SHIFT(HIGH\|\|tatgaa/\|YE69\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON);LOF=(ORF1ab\|GU280_gp01\|28\|0.11)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	41 NC_045512.2 1018 . G A 194.0 min_af_0.050000 AF=0.001555;DP=18008;DP4=14268,3704,24,6;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttG/ttA\|L251\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|ttG/ttA\|L251\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|ttG/ttA\|L71\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ttG/ttA\|L71\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	42 NC_045512.2 1019 . C T 96.0 min_af_0.050000 AF=0.000990;DP=18175;DP4=14292,3861,14,5;SB=2;EFF=STOP_GAINED(HIGH\|NONSENSE\|Cag/Tag\|Q252\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),STOP_GAINED(HIGH\|NONSENSE\|Cag/Tag\|Q252\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),STOP_GAINED(HIGH\|NONSENSE\|Cag/Tag\|Q72\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),STOP_GAINED(HIGH\|NONSENSE\|Cag/Tag\|Q72\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON);LOF=(ORF1ab\|GU280_gp01\|28\|0.04);NMD=(ORF1ab\|GU280_gp01\|28\|0.04)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	43 NC_045512.2 1059 . C T 49314.0 PASS AF=0.914482;DP=18230;DP4=1138,343,12822,3919;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCc/aTc\|T265I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCc/aTc\|T265I\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCc/aTc\|T85I\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCc/aTc\|T85I\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	44 NC_045512.2 1115 . A T 112.0 min_af_0.050000 AF=0.002090;DP=6697;DP4=2661,4022,1,13;SB=19;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I284F\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I284F\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I104F\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I104F\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	45 NC_045512.2 1140 . A G 82.0 min_af_0.050000 AF=0.001915;DP=6788;DP4=2923,3852,5,8;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K292R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K292R\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K112R\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K112R\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	46 NC_045512.2 1288 . C T 96.0 min_af_0.050000 AF=0.001212;DP=15681;DP4=3701,11913,4,57;SB=31;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C341\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C341\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C161\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C161\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	47 NC_045512.2 1644 . A C 204.0 min_af_0.050000 AF=0.001874;DP=14945;DP4=11652,3256,18,14;SB=22;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aCc\|N460T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aCc\|N460T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aCc\|N280T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aCc\|N280T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	48 NC_045512.2 1647 . T A 204.0 min_af_0.050000 AF=0.001794;DP=15048;DP4=11650,3368,14,14;SB=26;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTc/aAc\|I461N\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTc/aAc\|I461N\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTc/aAc\|I281N\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTc/aAc\|I281N\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	49 NC_045512.2 1656 . T A 169.0 min_af_0.050000 AF=0.001647;DP=15179;DP4=11625,3520,18,12;SB=13;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTt/gAt\|V464D\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTt/gAt\|V464D\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTt/gAt\|V284D\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTt/gAt\|V284D\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	50 NC_045512.2 1659 . G T 171.0 min_af_0.050000 AF=0.001899;DP=15272;DP4=11693,3542,22,12;SB=9;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G465V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G465V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G285V\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G285V\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	51 NC_045512.2 1698 . C T 85.0 min_af_0.050000 AF=0.001095;DP=15526;DP4=11739,3762,12,7;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A478V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A478V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A298V\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A298V\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	52 NC_045512.2 1701 . CT C 201.0 min_af_0.050000 AF=0.001361;DP=15428;DP4=11734,3700,17,4;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tct/\|S481\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tct/\|S481\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tct/\|S301\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tct/\|S301\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	53 NC_045512.2 1702 . T C 336.0 min_af_0.050000 AF=0.002654;DP=15449;DP4=11702,3680,34,10;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S479\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S479\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S299\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S299\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	54 NC_045512.2 1710 . C T 131.0 min_af_0.050000 AF=0.001431;DP=15372;DP4=11672,3674,11,12;SB=23;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A482V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A482V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A302V\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A302V\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	55 NC_045512.2 1733 . A G 97.0 min_af_0.050000 AF=0.001812;DP=7174;DP4=3582,3573,16,1;SB=35;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Act/Gct\|T490A\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Act/Gct\|T490A\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Act/Gct\|T310A\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Act/Gct\|T310A\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	56 NC_045512.2 1914 . G A 164.0 min_af_0.050000 AF=0.001604;DP=14959;DP4=3270,11663,2,22;SB=8;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R550H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R550H\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R370H\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R370H\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	57 NC_045512.2 1928 . G A 122.0 min_af_0.050000 AF=0.001310;DP=14507;DP4=2942,11544,2,17;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A555T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A555T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A375T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A375T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	58 NC_045512.2 2240 . A T 102.0 min_af_0.050000 AF=0.005411;DP=1848;DP4=440,1398,1,9;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I659F\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I659F\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I479F\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I479F\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	59 NC_045512.2 2371 . C A 84.0 min_af_0.050000 AF=0.033898;DP=118;DP4=57,56,3,2;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcC/gcA\|A702\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|gcC/gcA\|A702\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|gcC/gcA\|A522\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|gcC/gcA\|A522\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	60 NC_045512.2 3037 . C T 49314.0 PASS AF=0.989605;DP=1924;DP4=1,3,905,1013;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F924\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F924\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F106\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F106\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	61 NC_045512.2 3178 . T C 85.0 min_af_0.050000 AF=0.001409;DP=9934;DP4=6039,3875,10,7;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P971\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P971\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P153\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P153\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	62 NC_045512.2 3290 . C G 201.0 min_af_0.050000 AF=0.002822;DP=7796;DP4=6032,1737,15,7;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q1009E\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q1009E\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q191E\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q191E\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	63 NC_045512.2 3373 . C A 4347.0 PASS AF=0.062157;DP=3282;DP4=1695,1380,116,90;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaC/gaA\|D1036E\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaC/gaA\|D1036E\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaC/gaA\|D218E\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaC/gaA\|D218E\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	64 NC_045512.2 3412 . TA T 167.0 min_af_0.050000 AF=0.001903;DP=7881;DP4=1821,6068,4,11;HRUN=5;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aag/\|K1051\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aag/\|K1051\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aag/\|K233\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aag/\|K233\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	65 NC_045512.2 3832 . CT C 207.0 min_af_0.050000 AF=0.003618;DP=4146;DP4=3478,655,12,3;HRUN=5;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttg/\|L1191\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttg/\|L1191\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttg/\|L373\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttg/\|L373\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	66 NC_045512.2 4142 . G A 162.0 min_af_0.050000 AF=0.001370;DP=21166;DP4=14320,6812,14,19;SB=23;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gag/Aag\|E1293K\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gag/Aag\|E1293K\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gag/Aag\|E475K\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gag/Aag\|E475K\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	67 NC_045512.2 4179 . A G 90.0 min_af_0.050000 AF=0.001176;DP=19554;DP4=14327,5191,20,8;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K1305R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K1305R\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K487R\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K487R\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	68 NC_045512.2 4289 . G A 89.0 min_af_0.050000 AF=0.001013;DP=19750;DP4=5529,14191,8,13;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1342T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1342T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A524T\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A524T\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	69 NC_045512.2 4308 . A G 267.0 min_af_0.050000 AF=0.001968;DP=20834;DP4=5011,15773,12,32;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K1348R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K1348R\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K530R\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K530R\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	70 NC_045512.2 5291 . CT C 168.0 min_af_0.050000 AF=0.001809;DP=7188;DP4=5641,1540,12,1;HRUN=2;SB=4;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ctt/\|L1676\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ctt/\|L1676\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ctt/\|L858\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ctt/\|L858\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	71 NC_045512.2 5387 . G A 82.0 min_af_0.050000 AF=0.001671;DP=6582;DP4=4204,2365,8,3;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A1708T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A1708T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A890T\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A890T\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	72 NC_045512.2 5400 . C T 116.0 min_af_0.050000 AF=0.002168;DP=6458;DP4=4180,2261,9,6;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A1712V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A1712V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A894V\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A894V\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	73 NC_045512.2 5743 . G C 265.0 min_af_0.050000 AF=0.005125;DP=4683;DP4=2467,2189,5,19;SB=27;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaG/gaC\|E1826D\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaG/gaC\|E1826D\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaG/gaC\|E1008D\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaG/gaC\|E1008D\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	74 NC_045512.2 5744 . T C 406.0 min_af_0.050000 AF=0.007072;DP=4666;DP4=2466,2162,10,26;SB=26;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y1827H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y1827H\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y1009H\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y1009H\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	75 NC_045512.2 5765 . G A 192.0 min_af_0.050000 AF=0.004055;DP=4686;DP4=2625,2040,4,16;SB=29;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G1834S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G1834S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G1016S\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G1016S\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	76 NC_045512.2 5766 . G C 133.0 min_af_0.050000 AF=0.003178;DP=4720;DP4=2667,2035,3,12;SB=21;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gCt\|G1834A\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gCt\|G1834A\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gCt\|G1016A\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gCt\|G1016A\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	77 NC_045512.2 6181 . TA T 74.0 min_af_0.050000 AF=0.000612;DP=14709;DP4=2144,12612,0,9;HRUN=3;SB=4;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaa/\|K1973\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K1973\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K1155\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K1155\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	78 NC_045512.2 6242 . C T 165.0 min_af_0.050000 AF=0.000825;DP=46066;DP4=29941,16067,31,16;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H1993Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H1993Y\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H1175Y\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H1175Y\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	79 NC_045512.2 6254 . G A 105.0 min_af_0.050000 AF=0.000684;DP=39491;DP4=30022,9423,21,10;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1997T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1997T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1179T\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1179T\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	80 NC_045512.2 6271 . G A 379.0 min_af_0.050000 AF=0.001604;DP=39896;DP4=29246,10561,43,29;SB=19;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acG/acA\|T2002\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|acG/acA\|T2002\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|acG/acA\|T1184\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|acG/acA\|T1184\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	81 NC_045512.2 6364 . G A 108.0 min_af_0.050000 AF=0.001237;DP=16980;DP4=8010,8945,14,9;SB=6;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcG/gcA\|A2033\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|gcG/gcA\|A2033\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|gcG/gcA\|A1215\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|gcG/gcA\|A1215\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	82 NC_045512.2 6396 . TA T 87.0 min_af_0.050000 AF=0.000649;DP=18497;DP4=8545,10129,7,5;HRUN=4;SB=3;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaa/\|K2045\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K2045\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K1227\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K1227\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	83 NC_045512.2 6402 . C T 109.0 min_af_0.050000 AF=0.000771;DP=36334;DP4=8494,27803,7,23;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCa/cTa\|P2046L\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCa/cTa\|P2046L\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCa/cTa\|P1228L\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCa/cTa\|P1228L\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	84 NC_045512.2 6409 . T C 104.0 min_af_0.050000 AF=0.000721;DP=36080;DP4=8420,27622,5,22;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S2048\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S2048\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S1230\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S1230\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	85 NC_045512.2 7431 . CATTTT C 70.0 min_af_0.050000 AF=0.004202;DP=952;DP4=599,351,2,2;HRUN=1;SB=2;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttttattat/\|FYY2390\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttttattat/\|FYY2390\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttttattat/\|FYY1572\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttttattat/\|FYY1572\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	86 NC_045512.2 7736 . G A 87.0 min_af_0.050000 AF=0.001450;DP=9654;DP4=7167,2470,12,4;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtt/Att\|V2491I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtt/Att\|V2491I\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtt/Att\|V1673I\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtt/Att\|V1673I\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	87 NC_045512.2 7738 . T C 96.0 min_af_0.050000 AF=0.001449;DP=9661;DP4=7170,2476,11,4;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gtT/gtC\|V2491\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|gtT/gtC\|V2491\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|gtT/gtC\|V1673\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|gtT/gtC\|V1673\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	88 NC_045512.2 7771 . T G 119.0 min_af_0.050000 AF=0.001861;DP=9671;DP4=7169,2479,8,10;SB=19;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|caT/caG\|H2502Q\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|caT/caG\|H2502Q\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|caT/caG\|H1684Q\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|caT/caG\|H1684Q\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	89 NC_045512.2 7889 . GT G 495.0 min_af_0.050000 AF=0.003791;DP=9496;DP4=2286,7193,8,28;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F2543\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F2543\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F1725\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F1725\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	90 NC_045512.2 8927 . GT G 77.0 min_af_0.050000 AF=0.001225;DP=6529;DP4=5082,1441,6,2;HRUN=5;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F2889\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F2889\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F126\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F126\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	91 NC_045512.2 9014 . G A 94.0 min_af_0.050000 AF=0.001833;DP=7092;DP4=5255,1822,9,4;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A2917T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A2917T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A154T\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A154T\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	92 NC_045512.2 9479 . G T 578.0 min_af_0.050000 AF=0.027073;DP=1182;DP4=216,934,17,15;SB=47;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Tgt\|G3072C\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Tgt\|G3072C\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Tgt\|G309C\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Tgt\|G309C\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	93 NC_045512.2 9656 . A G 85.0 min_af_0.050000 AF=0.002371;DP=4218;DP4=1823,2383,10,0;SB=36;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Atg/Gtg\|M3131V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Atg/Gtg\|M3131V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Atg/Gtg\|M368V\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Atg/Gtg\|M368V\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	94 NC_045512.2 9737 . A AG 93.0 min_af_0.050000 AF=0.000941;DP=9561;DP4=2070,7513,4,5;HRUN=1;SB=9;INDEL;EFF=FRAME_SHIFT(HIGH\|\|agt/agGt\|S3158R?\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|AG\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|agt/agGt\|S3158R?\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|AG\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|agt/agGt\|S395R?\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|AG\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|agt/agGt\|S395R?\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|AG\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	95 NC_045512.2 9919 . T C 86.0 min_af_0.050000 AF=0.008837;DP=679;DP4=478,194,3,3;SB=4;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|agT/agC\|S3218\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|agT/agC\|S3218\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|agT/agC\|S455\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|agT/agC\|S455\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	96 NC_045512.2 10615 . C T 116.0 min_af_0.050000 AF=0.002812;DP=4623;DP4=1510,3095,5,9;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D3450\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D3450\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D187\|305\|ORF1ab\|protein_coding\|CODING\|YP_009725301.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D187\|305\|ORF1ab\|protein_coding\|CODING\|YP_009742612.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	97 NC_045512.2 10635 . C T 136.0 min_af_0.050000 AF=0.002999;DP=4668;DP4=1550,3104,5,9;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A3457V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A3457V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A194V\|305\|ORF1ab\|protein_coding\|CODING\|YP_009725301.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A194V\|305\|ORF1ab\|protein_coding\|CODING\|YP_009742612.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	98 NC_045512.2 10874 . A T 122.0 min_af_0.050000 AF=0.007206;DP=1249;DP4=654,586,4,5;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aat/Tat\|N3537Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aat/Tat\|N3537Y\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aat/Tat\|N274Y\|305\|ORF1ab\|protein_coding\|CODING\|YP_009725301.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aat/Tat\|N274Y\|305\|ORF1ab\|protein_coding\|CODING\|YP_009742612.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	99 NC_045512.2 11082 . TG T 110.0 min_af_0.050000 AF=0.000734;DP=16355;DP4=12351,4023,10,2;HRUN=1;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttg/\|L3606\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),FRAME_SHIFT(HIGH\|\|ttg/\|L3606\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),FRAME_SHIFT(HIGH\|\|ttg/\|L37\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),FRAME_SHIFT(HIGH\|\|ttg/\|L37\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	100 NC_045512.2 11083 . G T 328.0 min_af_0.050000 AF=0.003159;DP=16459;DP4=12330,4055,43,15;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L3606F\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L3606F\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L37F\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L37F\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	101 NC_045512.2 11250 . G A 84.0 min_af_0.050000 AF=0.000966;DP=17602;DP4=4658,12920,6,11;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R3662H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R3662H\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R93H\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R93H\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	102 NC_045512.2 11292 . GT G 105.0 min_af_0.050000 AF=0.000711;DP=18275;DP4=5121,13165,5,8;HRUN=4;SB=4;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F3677\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F3677\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F108\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F108\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	103 NC_045512.2 11654 . T C 101.0 min_af_0.050000 AF=0.001376;DP=12355;DP4=6380,5954,10,7;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttt/Ctt\|F3797L\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttt/Ctt\|F3797L\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttt/Ctt\|F228L\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttt/Ctt\|F228L\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	104 NC_045512.2 11895 . A G 117.0 min_af_0.050000 AF=0.001058;DP=21736;DP4=13835,7875,13,11;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAa/cGa\|Q3877R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAa/cGa\|Q3877R\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAa/cGa\|Q18R\|82\|ORF1ab\|protein_coding\|CODING\|YP_009725303.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAa/cGa\|Q18R\|82\|ORF1ab\|protein_coding\|CODING\|YP_009742614.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	105 NC_045512.2 11952 . A T 108.0 min_af_0.050000 AF=0.001249;DP=17618;DP4=13412,4175,18,4;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAt/aTt\|N3896I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAt/aTt\|N3896I\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAt/aTt\|N37I\|82\|ORF1ab\|protein_coding\|CODING\|YP_009725303.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAt/aTt\|N37I\|82\|ORF1ab\|protein_coding\|CODING\|YP_009742614.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	106 NC_045512.2 12031 . G A 88.0 min_af_0.050000 AF=0.001927;DP=8304;DP4=4111,4170,10,7;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|caG/caA\|Q3922\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|caG/caA\|Q3922\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|caG/caA\|Q63\|82\|ORF1ab\|protein_coding\|CODING\|YP_009725303.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|caG/caA\|Q63\|82\|ORF1ab\|protein_coding\|CODING\|YP_009742614.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	107 NC_045512.2 12035 . G A 91.0 min_af_0.050000 AF=0.001697;DP=8249;DP4=4097,4133,7,9;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A3924T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A3924T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A65T\|82\|ORF1ab\|protein_coding\|CODING\|YP_009725303.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A65T\|82\|ORF1ab\|protein_coding\|CODING\|YP_009742614.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	108 NC_045512.2 12128 . G A 124.0 min_af_0.050000 AF=0.001125;DP=20441;DP4=4710,15706,10,14;SB=13;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A3955T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A3955T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A13T\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A13T\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	109 NC_045512.2 12143 . G A 171.0 min_af_0.050000 AF=0.001269;DP=22057;DP4=6298,15713,9,20;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A3960T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A3960T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A18T\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A18T\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	110 NC_045512.2 12164 . G T 158.0 min_af_0.050000 AF=0.001229;DP=21965;DP4=6177,15735,10,23;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Tct\|A3967S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Tct\|A3967S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Tct\|A25S\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Tct\|A25S\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	111 NC_045512.2 12201 . A G 203.0 min_af_0.050000 AF=0.001756;DP=20503;DP4=5036,15425,12,27;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K3979R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K3979R\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K37R\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K37R\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	112 NC_045512.2 12458 . A G 2325.0 min_af_0.050000 AF=0.010507;DP=15038;DP4=11454,3422,135,23;SB=19;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aca/Gca\|T4065A\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aca/Gca\|T4065A\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aca/Gca\|T123A\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aca/Gca\|T123A\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	113 NC_045512.2 12673 . T C 83.0 min_af_0.050000 AF=0.001026;DP=14614;DP4=3924,10673,5,11;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A4136\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A4136\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A194\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A194\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	114 NC_045512.2 12684 . A G 90.0 min_af_0.050000 AF=0.001091;DP=14670;DP4=3905,10744,3,13;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAg/cGg\|Q4140R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAg/cGg\|Q4140R\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION(MODERATE\|MISSENSE\|cAg/cGg\|Q198R\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION(MODERATE\|MISSENSE\|cAg/cGg\|Q198R\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	115 NC_045512.2 12703 . T C 99.0 min_af_0.050000 AF=0.001164;DP=14610;DP4=3877,10708,6,16;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P4146\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P4146\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P6\|112\|ORF1ab\|protein_coding\|CODING\|YP_009725305.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P6\|112\|ORF1ab\|protein_coding\|CODING\|YP_009742616.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	116 NC_045512.2 13006 . T C 100.0 min_af_0.050000 AF=0.001091;DP=18324;DP4=4970,13320,5,18;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A4247\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A4247\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A107\|112\|ORF1ab\|protein_coding\|CODING\|YP_009725305.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A107\|112\|ORF1ab\|protein_coding\|CODING\|YP_009742616.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	117 NC_045512.2 13034 . G A 287.0 min_af_0.050000 AF=0.001172;DP=43512;DP4=25678,17773,36,17;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4257T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4257T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	118 NC_045512.2 13039 . A G 153.0 min_af_0.050000 AF=0.000801;DP=43670;DP4=25606,18020,23,15;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acA/acG\|T4258\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),SYNONYMOUS_CODING(LOW\|SILENT\|acA/acG\|T4258\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),SYNONYMOUS_CODING(LOW\|SILENT\|acA/acG\|T5\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|acA/acG\|T5\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	119 NC_045512.2 13049 . G A 126.0 min_af_0.050000 AF=0.000745;DP=44275;DP4=25781,18447,22,16;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A4262T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A4262T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A9T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A9T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	120 NC_045512.2 13050 . C T 160.0 min_af_0.050000 AF=0.000857;DP=44323;DP4=25765,18501,28,14;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gTc\|A4262V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gTc\|A4262V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gTc\|A9V\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gTc\|A9V\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	121 NC_045512.2 13123 . TG T 90.0 min_af_0.050000 AF=0.000496;DP=32271;DP4=23537,8806,12,4;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gga/\|G4288\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|gga/\|G4288\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|gga/\|G35\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|gga/\|G35\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.11)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	122 NC_045512.2 13126 . G T 894.0 min_af_0.050000 AF=0.003763;DP=32684;DP4=23617,8932,96,30;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ggG/ggT\|G4287\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|ggG/ggT\|G4287\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|ggG/ggT\|G34\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ggG/ggT\|G34\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	123 NC_045512.2 13129 . A G 415.0 min_af_0.050000 AF=0.002114;DP=32636;DP4=23626,8909,60,24;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G4288\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G4288\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G35\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G35\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	124 NC_045512.2 13142 . AATT A 68.0 min_af_0.050000 AF=0.000345;DP=31908;DP4=23436,8544,7,4;HRUN=2;SB=3;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|aattgt/agt\|NC4293S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|aattgt/agt\|NC4293S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|aattgt/agt\|NC40S\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|aattgt/agt\|NC40S\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	125 NC_045512.2 13178 . G A 92.0 min_af_0.050000 AF=0.001099;DP=15464;DP4=7168,8274,7,12;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G4305S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G4305S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G52S\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G52S\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	126 NC_045512.2 13184 . G A 88.0 min_af_0.050000 AF=0.001085;DP=15669;DP4=7536,8107,10,8;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4307T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4307T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A54T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A54T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	127 NC_045512.2 13235 . G A 184.0 min_af_0.050000 AF=0.001314;DP=30447;DP4=8620,21776,11,31;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4324T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4324T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A71T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A71T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	128 NC_045512.2 13240 . G A 120.0 min_af_0.050000 AF=0.001047;DP=30554;DP4=8647,21862,13,25;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tcG/tcA\|S4325\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|tcG/tcA\|S4325\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|tcG/tcA\|S72\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tcG/tcA\|S72\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	129 NC_045512.2 13255 . C T 121.0 min_af_0.050000 AF=0.000922;DP=32523;DP4=8871,23617,11,19;SB=5;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C4330\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C4330\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C77\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C77\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	130 NC_045512.2 13257 . G A 103.0 min_af_0.050000 AF=0.000795;DP=32720;DP4=8969,23719,5,23;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R4331H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R4331H\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R78H\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R78H\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	131 NC_045512.2 13299 . TA T 67.0 min_af_0.050000 AF=0.000373;DP=32129;DP4=8835,23401,3,9;HRUN=4;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaa/\|K4346\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K4346\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K93\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K93\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.11)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	132 NC_045512.2 13345 . T C 114.0 min_af_0.050000 AF=0.000845;DP=34302;DP4=11365,22885,12,23;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P4360\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P4360\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P107\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P107\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	133 NC_045512.2 13385 . G A 203.0 min_af_0.050000 AF=0.003101;DP=9673;DP4=7564,2070,23,10;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G4374S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G4374S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G121S\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G121S\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	134 NC_045512.2 13482 . A G 84.0 min_af_0.050000 AF=0.002138;DP=5145;DP4=2849,2284,8,3;SB=4;EFF=SPLICE_SITE_REGION+SYNONYMOUS_STOP(LOW\|SILENT\|tAa/tGa\|*4406\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),SYNONYMOUS_CODING(LOW\|SILENT\|gtA/gtG\|V4406\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G),SYNONYMOUS_CODING(LOW\|SILENT\|gtA/gtG\|V14\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	135 NC_045512.2 13541 . CT C 128.0 min_af_0.050000 AF=0.001323;DP=9073;DP4=2350,6760,4,8;HRUN=4;SB=2;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F4427\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F35\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.04)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	136 NC_045512.2 13565 . T G 710.0 min_af_0.050000 AF=0.006207;DP=9345;DP4=2347,6927,31,27;SB=52;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTa/gGa\|V4434G\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTa/gGa\|V42G\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	137 NC_045512.2 13571 . G T 498.0 min_af_0.050000 AF=0.004930;DP=9533;DP4=2456,7025,10,39;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G4436V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G44V\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	138 NC_045512.2 13586 . TA T 114.0 min_af_0.050000 AF=0.001250;DP=9600;DP4=2526,7104,3,9;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|act/\|T4443\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|act/\|T51\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	139 NC_045512.2 13729 . G A 97.0 min_af_0.050000 AF=0.000758;DP=31659;DP4=23911,7707,19,7;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A4489T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A97T\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	140 NC_045512.2 13982 . G A 334.0 min_af_0.050000 AF=0.003336;DP=13191;DP4=10186,2952,21,25;SB=55;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R4573H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R181H\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	141 NC_045512.2 14197 . G A 131.0 min_af_0.050000 AF=0.001509;DP=12592;DP4=2965,9602,4,17;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4645T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A253T\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	142 NC_045512.2 14408 . C T 49314.0 PASS AF=0.993579;DP=1869;DP4=2,1,961,905;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cTt\|P4715L\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cTt\|P323L\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	143 NC_045512.2 14625 . CT C 95.0 min_af_0.050000 AF=0.000978;DP=10228;DP4=7598,2681,7,3;HRUN=4;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tca/\|S4789\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tca/\|S397\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	144 NC_045512.2 14638 . G A 81.0 min_af_0.050000 AF=0.001254;DP=10364;DP4=7602,2745,9,5;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4792T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A400T\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	145 NC_045512.2 15380 . G T 19339.0 PASS AF=0.137502;DP=5629;DP4=2428,2416,397,383;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGc/aTc\|S5039I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGc/aTc\|S647I\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	146 NC_045512.2 15481 . T C 525.0 min_af_0.050000 AF=0.004225;DP=12307;DP4=3137,9071,51,40;SB=87;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tca/Cca\|S5073P\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tca/Cca\|S681P\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	147 NC_045512.2 15537 . T C 82.0 min_af_0.050000 AF=0.000714;DP=32206;DP4=19463,12697,24,11;SB=4;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A5091\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A699\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	148 NC_045512.2 15602 . G A 81.0 min_af_0.050000 AF=0.000869;DP=25304;DP4=18787,6490,16,6;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R5113H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R721H\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	149 NC_045512.2 15673 . T G 170.0 min_af_0.050000;sb_fdr AF=0.002959;DP=11154;DP4=5550,5555,29,5;SB=44;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttt/Gtt\|F5137V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttt/Gtt\|F745V\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	150 NC_045512.2 15682 . T A 3591.0 min_af_0.050000 AF=0.019897;DP=11057;DP4=5644,5185,123,101;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tat/Aat\|Y5140N\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tat/Aat\|Y748N\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	151 NC_045512.2 15685 . T A 3576.0 min_af_0.050000 AF=0.019571;DP=11088;DP4=5677,5189,119,98;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttg/Atg\|L5141M\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttg/Atg\|L749M\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	152 NC_045512.2 15784 . T TGAC 112.0 min_af_0.050000 AF=0.000564;DP=24832;DP4=6387,18537,7,7;HRUN=3;SB=12;INDEL;EFF=STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION(HIGH\|\|ttt/tGACtt\|F5174L\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|TGAC),STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION(HIGH\|\|ttt/tGACtt\|F782L\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|TGAC\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	153 NC_045512.2 15788 . AGTC A 113.0 min_af_0.050000 AF=0.000570;DP=24581;DP4=6120,18483,7,7;HRUN=1;SB=12;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|aagtca/aaa\|KS5175K\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|aagtca/aaa\|KS783K\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	154 NC_045512.2 16946 . C T 81.0 min_af_0.050000 AF=0.002242;DP=4461;DP4=1946,2504,5,6;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A5561V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A237V\|600\|ORF1ab\|protein_coding\|CODING\|YP_009725308.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	155 NC_045512.2 17035 . G A 130.0 min_af_0.050000 AF=0.002105;DP=8076;DP4=2373,5684,6,12;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A5591T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A267T\|600\|ORF1ab\|protein_coding\|CODING\|YP_009725308.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	156 NC_045512.2 17146 . A G 124.0 min_af_0.050000 AF=0.001762;DP=11915;DP4=8858,3024,17,7;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ata/Gta\|I5628V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ata/Gta\|I304V\|600\|ORF1ab\|protein_coding\|CODING\|YP_009725308.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	157 NC_045512.2 17200 . TTAAAA T 215.0 min_af_0.050000 AF=0.001499;DP=12007;DP4=8894,3153,15,3;HRUN=2;SB=3;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaatat/\|KY5647\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaatat/\|KY323\|600\|ORF1ab\|protein_coding\|CODING\|YP_009725308.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	158 NC_045512.2 17410 . C T 89.0 min_af_0.050000 AF=0.001226;DP=13051;DP4=3103,9927,5,12;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cgt/Tgt\|R5716C\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cgt/Tgt\|R392C\|600\|ORF1ab\|protein_coding\|CODING\|YP_009725308.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	159 NC_045512.2 18687 . CT C 125.0 min_af_0.050000 AF=0.001021;DP=13716;DP4=10356,3385,9,5;HRUN=4;SB=4;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tcc/\|S6143\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tcc/\|S218\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	160 NC_045512.2 18839 . C T 87.0 min_af_0.050000 AF=0.001144;DP=13109;DP4=3502,9590,6,9;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A6192V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A267V\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	161 NC_045512.2 19029 . C T 142.0 min_af_0.050000 AF=0.001333;DP=18002;DP4=13296,4678,17,7;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|caC/caT\|H6255\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),SYNONYMOUS_CODING(LOW\|SILENT\|caC/caT\|H330\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	162 NC_045512.2 19132 . G T 183.0 min_af_0.050000 AF=0.002631;DP=7981;DP4=4498,3460,10,12;SB=4;EFF=STOP_GAINED(HIGH\|NONSENSE\|Gaa/Taa\|E6290\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),STOP_GAINED(HIGH\|NONSENSE\|Gaa/Taa\|E365\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	163 NC_045512.2 19137 . A C 139.0 min_af_0.050000 AF=0.002242;DP=8029;DP4=4529,3481,8,10;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttA/ttC\|L6291F\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttA/ttC\|L366F\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	164 NC_045512.2 19173 . A G 184.0 min_af_0.050000 AF=0.001475;DP=18300;DP4=4405,13862,8,20;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acA/acG\|T6303\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G),SYNONYMOUS_CODING(LOW\|SILENT\|acA/acG\|T378\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	165 NC_045512.2 19199 . G A 95.0 min_af_0.050000 AF=0.000992;DP=18154;DP4=4265,13867,5,14;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C6312Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C387Y\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	166 NC_045512.2 19554 . CT C 88.0 min_af_0.050000 AF=0.002555;DP=2348;DP4=169,2178,0,6;HRUN=3;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F6431\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F506\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.04)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	167 NC_045512.2 19804 . A G 95.0 min_af_0.050000 AF=0.001057;DP=17023;DP4=4133,12868,6,14;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aac/Gac\|N6514D\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aac/Gac\|N62D\|345\|ORF1ab\|protein_coding\|CODING\|YP_009725310.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	168 NC_045512.2 20555 . C T 1517.0 min_af_0.050000 AF=0.008538;DP=12766;DP4=9871,2780,90,22;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCt/tTt\|S6764F\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCt/tTt\|S312F\|345\|ORF1ab\|protein_coding\|CODING\|YP_009725310.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	169 NC_045512.2 20769 . TA T 71.0 min_af_0.050000 AF=0.000640;DP=12508;DP4=3063,9486,3,5;HRUN=3;SB=3;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaa/\|K6836\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K38\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.04)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	170 NC_045512.2 20791 . G A 100.0 min_af_0.050000 AF=0.001350;DP=14075;DP4=2871,11181,6,16;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A6843T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A45T\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	171 NC_045512.2 21066 . TA T 267.0 min_af_0.050000 AF=0.001799;DP=13898;DP4=3162,10753,8,17;HRUN=5;SB=4;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aat/\|N6936\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aat/\|N138\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.04)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	172 NC_045512.2 21093 . TA T 69.0 min_af_0.050000 AF=0.000600;DP=13336;DP4=2749,10687,2,6;HRUN=3;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaa/\|K6944\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K146\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.04)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	173 NC_045512.2 21123 . G T 2708.0 min_af_0.050000 AF=0.013197;DP=13412;DP4=3026,10193,36,152;SB=5;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ggG/ggT\|G6953\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),SYNONYMOUS_CODING(LOW\|SILENT\|ggG/ggT\|G155\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	174 NC_045512.2 21204 . G T 1022.0 min_af_0.050000 AF=0.041982;DP=1191;DP4=795,343,25,27;SB=27;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaG/aaT\|K6980N\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaG/aaT\|K182N\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	175 NC_045512.2 21650 . A C 117.0 min_af_0.050000 AF=0.004405;DP=2270;DP4=628,1631,2,8;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aat/Cat\|N30H\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	176 NC_045512.2 21656 . TTCAC T 72.0 min_af_0.050000 AF=0.002225;DP=2247;DP4=622,1639,2,3;HRUN=3;SB=2;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttcaca/\|FT32\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	177 NC_045512.2 21736 . CT C 78.0 min_af_0.050000 AF=0.000985;DP=8122;DP4=6241,1886,6,2;HRUN=4;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tcc/\|S60\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	178 NC_045512.2 21954 . G A 81.0 min_af_0.050000 AF=0.001578;DP=6970;DP4=1556,5401,2,9;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGt/tAt\|C131Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	179 NC_045512.2 22000 . CA C 164.0 min_af_0.050000 AF=0.001817;DP=8255;DP4=2894,5378,9,6;HRUN=5;SB=12;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aac/\|N148\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C\|INFO_REALIGN_3_PRIME);LOF=(S\|GU280_gp02\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	180 NC_045512.2 22091 . A G 248.0 min_af_0.050000 AF=0.006641;DP=2861;DP4=2126,714,18,1;SB=12;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Atg/Gtg\|M177V\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	181 NC_045512.2 22120 . CA C 69.0 min_af_0.050000 AF=0.003159;DP=1583;DP4=970,695,1,4;HRUN=5;SB=7;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aat/\|N188\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C\|INFO_REALIGN_3_PRIME);LOF=(S\|GU280_gp02\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	182 NC_045512.2 22583 . GTTT G 87.0 min_af_0.050000 AF=0.000843;DP=13055;DP4=10169,2877,8,3;HRUN=5;SB=1;INDEL;EFF=CODON_DELETION(MODERATE\|\|ttt/\|F342\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	183 NC_045512.2 22643 . T A 561.0 min_af_0.050000 AF=0.003894;DP=13611;DP4=10284,3268,43,11;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgt/Agt\|C361S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	184 NC_045512.2 22644 . G C 533.0 min_af_0.050000 AF=0.003793;DP=13710;DP4=10293,3357,41,11;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGt/tCt\|C361S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	185 NC_045512.2 22645 . T A 522.0 min_af_0.050000 AF=0.003723;DP=13699;DP4=10277,3356,44,11;SB=2;EFF=STOP_GAINED(HIGH\|NONSENSE\|tgT/tgA\|C361*\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	186 NC_045512.2 22851 . C T 115.0 min_af_0.050000 AF=0.001412;DP=12041;DP4=3221,8772,5,33;SB=11;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T430I\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	187 NC_045512.2 22858 . C T 81.0 min_af_0.050000 AF=0.001258;DP=11921;DP4=3141,8751,5,11;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C432\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	188 NC_045512.2 23131 . TG T 92.0 min_af_0.050000 AF=0.001755;DP=3989;DP4=819,3176,0,7;HRUN=1;SB=4;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gtt/\|V524\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T);LOF=(S\|GU280_gp02\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	189 NC_045512.2 23132 . GT G 125.0 min_af_0.050000 AF=0.002191;DP=4108;DP4=817,3296,0,9;HRUN=3;SB=6;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tgt/\|C525\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(S\|GU280_gp02\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	190 NC_045512.2 23403 . A G 49314.0 PASS AF=0.991574;DP=16497;DP4=5,22,4298,12165;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gGt\|D614G\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	191 NC_045512.2 23417 . G T 370.0 min_af_0.050000 AF=0.002551;DP=16465;DP4=4287,12132,12,30;SB=1;EFF=STOP_GAINED(HIGH\|NONSENSE\|Gaa/Taa\|E619*\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	192 NC_045512.2 23554 . ACCCATTGGTGCAGGTATATGCGCTAGTT A 194.0 min_af_0.050000 AF=0.002880;DP=4514;DP4=3258,1249,11,2;HRUN=3;SB=2;INDEL;EFF=FRAME_SHIFT(HIGH\|\|cccattggtgcaggtatatgcgctagttat/\|PIGAGICASY665\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A);LOF=(S\|GU280_gp02\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	193 NC_045512.2 23582 . TATCAGACTCAGACTA T 519.0 min_af_0.050000 AF=0.006436;DP=4506;DP4=3258,1232,14,15;HRUN=1;SB=22;INDEL;EFF=CODON_DELETION(MODERATE\|\|cagactcagactaat/\|QTQTN675\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	194 NC_045512.2 24728 . G A 138.0 min_af_0.050000 AF=0.001075;DP=23260;DP4=18198,5032,20,6;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1056T\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	195 NC_045512.2 24729 . C T 267.0 min_af_0.050000 AF=0.001633;DP=23275;DP4=18189,5042,31,9;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A1056V\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	196 NC_045512.2 24770 . G A 85.0 min_af_0.050000 AF=0.000776;DP=24482;DP4=18807,5645,16,4;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1070T\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	197 NC_045512.2 24771 . C T 100.0 min_af_0.050000 AF=0.000857;DP=24506;DP4=18807,5671,17,5;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A1070V\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	198 NC_045512.2 24794 . G A 173.0 min_af_0.050000 AF=0.001191;DP=25181;DP4=18729,6412,23,8;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A1078T\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	199 NC_045512.2 24910 . TAC T 77.0 min_af_0.050000 AF=0.000771;DP=10375;DP4=5736,4681,6,2;HRUN=1;SB=5;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aca/\|T1117\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T\|INFO_REALIGN_3_PRIME);LOF=(S\|GU280_gp02\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	200 NC_045512.2 24933 . G T 547.0 min_af_0.050000 AF=0.002715;DP=23942;DP4=5894,17971,24,44;SB=13;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G1124V\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	201 NC_045512.2 24938 . T C 90.0 min_af_0.050000 AF=0.000836;DP=23912;DP4=5888,17993,5,17;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgt/Cgt\|C1126R\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	202 NC_045512.2 24942 . A T 433.0 min_af_0.050000 AF=0.002206;DP=24029;DP4=5968,18000,7,48;SB=13;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gTt\|D1127V\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	203 NC_045512.2 24986 . C T 213.0 min_af_0.050000 AF=0.001391;DP=23728;DP4=5830,17860,9,24;SB=1;EFF=STOP_GAINED(HIGH\|NONSENSE\|Caa/Taa\|Q1142*\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	204 NC_045512.2 25344 . C T 81.0 min_af_0.050000;sb_fdr AF=0.002408;DP=11212;DP4=8717,2463,4,24;SB=118;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCt/tTt\|S1261F\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	205 NC_045512.2 25563 . G T 49314.0 PASS AF=0.910164;DP=12456;DP4=238,777,2686,8750;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|caG/caT\|Q57H\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	206 NC_045512.2 25567 . G A 86.0 min_af_0.050000 AF=0.001207;DP=12424;DP4=2908,9492,5,12;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A59T\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	207 NC_045512.2 25572 . CA C 112.0 min_af_0.050000 AF=0.000961;DP=12491;DP4=2976,9571,1,11;HRUN=4;SB=5;INDEL;EFF=FRAME_SHIFT(HIGH\|\|atc/\|I62\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|C\|INFO_REALIGN_3_PRIME);LOF=(ORF3a\|GU280_gp03\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	208 NC_045512.2 25635 . C T 95.0 min_af_0.050000 AF=0.001259;DP=11913;DP4=2737,9155,4,11;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C81\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	209 NC_045512.2 25646 . T G 88.0 min_af_0.050000;sb_fdr AF=0.001532;DP=11748;DP4=2658,9069,16,2;SB=83;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTg/tGg\|L85W\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	210 NC_045512.2 25797 . CA C 93.0 min_af_0.050000 AF=0.004626;DP=1297;DP4=521,784,1,5;HRUN=5;SB=3;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aac/\|N137\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|C\|INFO_REALIGN_3_PRIME);LOF=(ORF3a\|GU280_gp03\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	211 NC_045512.2 26042 . C T 1956.0 min_af_0.050000 AF=0.008189;DP=17706;DP4=12836,4716,99,50;SB=11;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T217I\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	212 NC_045512.2 26044 . C G 1842.0 min_af_0.050000 AF=0.007844;DP=17592;DP4=12777,4670,91,48;SB=13;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q218E\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	213 NC_045512.2 26046 . A G 1895.0 min_af_0.050000 AF=0.008153;DP=17662;DP4=12782,4734,95,51;SB=14;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|caA/caG\|Q218\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	214 NC_045512.2 26057 . A C 226.0 min_af_0.050000 AF=0.003504;DP=11131;DP4=6545,4539,21,19;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAc/gCc\|D222A\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	215 NC_045512.2 26089 . T A 325.0 min_af_0.050000 AF=0.003996;DP=7758;DP4=3605,4118,5,28;SB=35;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Aac\|Y233N\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	216 NC_045512.2 26103 . T A 508.0 min_af_0.050000 AF=0.005526;DP=7963;DP4=3881,4036,34,10;SB=36;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gtT/gtA\|V237\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	217 NC_045512.2 26157 . TGTTA T 86.0 min_af_0.050000 AF=0.001022;DP=7827;DP4=4500,3335,7,1;HRUN=1;SB=8;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gttaat/\|VN256\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T);LOF=(ORF3a\|GU280_gp03\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	218 NC_045512.2 26189 . A G 161.0 min_af_0.050000 AF=0.001616;DP=17322;DP4=4576,12716,9,21;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAa/gGa\|E266G\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	219 NC_045512.2 26542 . C A 369.0 min_af_0.050000 AF=0.006926;DP=4043;DP4=233,3778,5,23;SB=16;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aAt\|T7N\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	220 NC_045512.2 26545 . T G 1128.0 min_af_0.050000 AF=0.004540;DP=24230;DP4=20240,3866,88,26;SB=12;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTt/aGt\|I8S\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	221 NC_045512.2 26554 . A G 296.0 min_af_0.050000 AF=0.001728;DP=24881;DP4=20503,4324,36,11;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAa/gGa\|E11G\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	222 NC_045512.2 26566 . A G 125.0 min_af_0.050000 AF=0.001328;DP=25594;DP4=20737,4806,27,9;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K15R\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	223 NC_045512.2 26573 . TGAACAATGGAACCTAGTAATAGGTTTCCTA T 159.0 min_af_0.050000 AF=0.000710;DP=25348;DP4=20879,4448,14,4;HRUN=1;SB=2;INDEL;EFF=CODON_DELETION(MODERATE\|\|gaacaatggaacctagtaataggtttccta/\|EQWNLVIGFL18\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	224 NC_045512.2 26574 . GAACAATGGAACCTAGTAATAGGTTTCCTA G 99.0 min_af_0.050000 AF=0.000510;DP=25466;DP4=20936,4518,12,1;HRUN=2;SB=3;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gaacaatggaacctagtaataggtttccta/\|EQWNLVIGFL18\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G);LOF=(M\|GU280_gp05\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	225 NC_045512.2 26635 . C T 180.0 min_af_0.050000 AF=0.001185;DP=27851;DP4=21620,6185,28,10;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gTc\|A38V\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	226 NC_045512.2 26763 . G A 81.0 min_af_0.050000 AF=0.000763;DP=27529;DP4=6306,21191,4,17;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A81T\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	227 NC_045512.2 26769 . G A 94.0 min_af_0.050000 AF=0.000832;DP=27645;DP4=6442,21176,4,19;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A83T\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	228 NC_045512.2 26774 . GGCTTGTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCTTCTTTCAGACTGTT G 153.0 min_af_0.050000 AF=0.000651;DP=27645;DP4=6489,21183,1,17;HRUN=2;SB=10;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gcttgtcttgtaggcttgatgtggctcagctacttcattgcttctttcagactgttt/\|ACLVGLMWLSYFIASFRLF85\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G);LOF=(M\|GU280_gp05\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	229 NC_045512.2 26775 . GCTTGTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCTT G 106.0 min_af_0.050000 AF=0.000508;DP=27555;DP4=6490,21192,2,12;HRUN=1;SB=2;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|tgtcttgtaggcttgatgtggctcagctacttcattgcttctttc/ttc\|CLVGLMWLSYFIASF86F\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	230 NC_045512.2 26779 . GTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCT G 914.0 min_af_0.050000 AF=0.002420;DP=27690;DP4=6485,21216,9,58;HRUN=1;SB=12;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gtaggcttgatgtggctcagctacttcattgcttctttc/\|VGLMWLSYFIASF88\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(M\|GU280_gp05\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	231 NC_045512.2 26784 . GTAGGCTTGATGTGGCTCAGCTACTTCATTGCTTCTT G 242.0 min_af_0.050000 AF=0.000902;DP=27725;DP4=6544,21238,5,20;HRUN=1;SB=0;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|gtaggcttgatgtggctcagctacttcattgcttctttc/gtc\|VGLMWLSYFIASF88V\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	232 NC_045512.2 26786 . AGGCTTGATGTGGCTCAGCTACTTCATTGCTTCTT A 574.0 min_af_0.050000 AF=0.001701;DP=27628;DP4=6442,21191,4,43;HRUN=2;SB=18;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ggcttgatgtggctcagctacttcattgcttctttc/\|GLMWLSYFIASF89\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A);LOF=(M\|GU280_gp05\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	233 NC_045512.2 26798 . G A 88.0 min_af_0.050000 AF=0.000750;DP=27989;DP4=6584,21171,7,16;SB=3;EFF=STOP_GAINED(HIGH\|NONSENSE\|tgG/tgA\|W92*\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	234 NC_045512.2 26814 . G A 89.0 min_af_0.050000 AF=0.000826;DP=27845;DP4=6505,21101,5,19;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A98T\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	235 NC_045512.2 26839 . C T 115.0 min_af_0.050000 AF=0.001001;DP=27978;DP4=5992,21948,9,20;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T106M\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	236 NC_045512.2 26887 . T C 178.0 min_af_0.050000 AF=0.000942;DP=40361;DP4=17436,22867,21,21;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTg/gCg\|V122A\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	237 NC_045512.2 26889 . C T 94.0 min_af_0.050000 AF=0.000744;DP=40302;DP4=17327,22937,12,20;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cca/Tca\|P123S\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	238 NC_045512.2 27076 . A G 91.0 min_af_0.050000 AF=0.001012;DP=20750;DP4=5415,15300,7,25;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAg/cGg\|Q185R\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	239 NC_045512.2 27131 . CTATAAAT C 85.0 min_af_0.050000 AF=0.000517;DP=21269;DP4=5687,15657,2,9;HRUN=1;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tataaatta/\|YKL204\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|C\|INFO_REALIGN_3_PRIME);LOF=(M\|GU280_gp05\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	240 NC_045512.2 27145 . C T 105.0 min_af_0.050000 AF=0.000947;DP=22170;DP4=5499,16643,8,14;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T208I\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	241 NC_045512.2 27214 . G A 95.0 min_af_0.050000 AF=0.000906;DP=20964;DP4=16303,4623,16,4;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtt/Att\|V5I\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	242 NC_045512.2 27285 . T A 122.0 min_af_0.050000 AF=0.001097;DP=20974;DP4=15962,4976,20,4;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaT/aaA\|N28K\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	243 NC_045512.2 27335 . C T 348.0 min_af_0.050000 AF=0.003743;DP=9350;DP4=5145,4165,25,12;SB=8;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T45I\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	244 NC_045512.2 27344 . A T 857.0 min_af_0.050000 AF=0.007391;DP=9336;DP4=5187,4074,34,35;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAa/aTa\|K48I\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	245 NC_045512.2 27345 . A T 824.0 min_af_0.050000 AF=0.007162;DP=9355;DP4=5202,4083,34,35;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaA/aaT\|K48N\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	246 NC_045512.2 27354 . A G 835.0 min_af_0.050000 AF=0.007265;DP=9085;DP4=5193,3824,37,30;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|caA/caG\|Q51\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	247 NC_045512.2 27384 . T C 18042.0 min_af_0.050000 AF=0.039210;DP=22979;DP4=5329,16742,231,675;SB=4;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaT/gaC\|D61\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	248 NC_045512.2 27476 . C T 120.0 min_af_0.050000 AF=0.001083;DP=21237;DP4=4263,16944,7,18;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T28I\|121\|ORF7a\|protein_coding\|CODING\|GU280_gp07\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	249 NC_045512.2 27484 . T C 255.0 min_af_0.050000 AF=0.001917;DP=20866;DP4=3996,16822,10,37;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|Tta/Cta\|L31\|121\|ORF7a\|protein_coding\|CODING\|GU280_gp07\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	250 NC_045512.2 27883 . C A 5191.0 PASS AF=0.163062;DP=1202;DP4=757,245,152,47;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gAc\|A43D\|43\|ORF7b\|protein_coding\|CODING\|GU280_gp08\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	251 NC_045512.2 27916 . G T 383.0 min_af_0.050000 AF=0.018272;DP=1204;DP4=884,296,18,5;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGa/gTa\|G8V\|121\|ORF8\|protein_coding\|CODING\|GU280_gp09\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	252 NC_045512.2 28116 . G A 100.0 min_af_0.050000 AF=0.001102;DP=18155;DP4=14658,3471,15,7;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gat/Aat\|D75N\|121\|ORF8\|protein_coding\|CODING\|GU280_gp09\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	253 NC_045512.2 28121 . C T 85.0 min_af_0.050000 AF=0.000927;DP=18332;DP4=14718,3591,13,4;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|atC/atT\|I76\|121\|ORF8\|protein_coding\|CODING\|GU280_gp09\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	254 NC_045512.2 28333 . C A 188.0 min_af_0.050000 AF=0.001670;DP=19759;DP4=4578,15135,15,20;SB=20;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccC/ccA\|P20\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	255 NC_045512.2 28346 . G T 237.0 min_af_0.050000 AF=0.001681;DP=19634;DP4=4549,15043,16,18;SB=24;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggc/Tgc\|G25C\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	256 NC_045512.2 28347 . G A 4058.0 min_af_0.050000 AF=0.013345;DP=19633;DP4=4498,14865,67,200;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGc/gAc\|G25D\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	257 NC_045512.2 28383 . CA C 138.0 min_af_0.050000 AF=0.000833;DP=19212;DP4=4193,15092,3,13;HRUN=4;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaa/\|K38\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C\|INFO_REALIGN_3_PRIME);LOF=(N\|GU280_gp10\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	258 NC_045512.2 28391 . C T 95.0 min_af_0.050000 AF=0.001045;DP=19144;DP4=4089,15033,6,15;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cgt/Tgt\|R40C\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	259 NC_045512.2 28406 . TTACCCAATA T 68.0 min_af_0.050000 AF=0.000476;DP=18921;DP4=3692,15258,2,7;HRUN=3;SB=1;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ttacccaataat/tat\|LPNN45Y\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	260 NC_045512.2 28420 . T C 82.0 min_af_0.050000 AF=0.000929;DP=20450;DP4=5421,14999,5,18;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acT/acC\|T49\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	261 NC_045512.2 28727 . G A 132.0 min_af_0.050000 AF=0.001513;DP=12555;DP4=8651,3864,27,5;SB=10;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A152T\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	262 NC_045512.2 28881 . G A 10935.0 PASS AF=0.076973;DP=6184;DP4=2898,2809,253,223;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGg/aAg\|R203K\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	263 NC_045512.2 28882 . G A 10816.0 PASS AF=0.075656;DP=6252;DP4=2940,2836,252,223;SB=4;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|agG/agA\|R203\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	264 NC_045512.2 28883 . G C 10619.0 PASS AF=0.075804;DP=6253;DP4=2948,2825,255,222;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gga/Cga\|G204R\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	265 NC_045512.2 28987 . CCAA C 654.0 min_af_0.050000 AF=0.003439;DP=12502;DP4=2863,9632,6,37;HRUN=2;SB=6;INDEL;EFF=CODON_DELETION(MODERATE\|\|caa/\|Q242\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	266 NC_045512.2 29029 . T C 4700.0 min_af_0.050000 AF=0.011125;DP=28765;DP4=17309,11111,119,216;SB=198;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A252\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	267 NC_045512.2 29031 . A G 100.0 min_af_0.050000 AF=0.000797;DP=28875;DP4=17391,11440,12,18;SB=15;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAg/gGg\|E253G\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	268 NC_045512.2 29039 . A T 8719.0 min_af_0.050000 AF=0.017926;DP=29232;DP4=17349,11343,226,304;SB=155;EFF=STOP_GAINED(HIGH\|NONSENSE\|Aag/Tag\|K256*\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	269 NC_045512.2 29049 . G A 828.0 min_af_0.050000 AF=0.003925;DP=22418;DP4=17644,4672,80,15;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGg/cAg\|R259Q\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	270 NC_045512.2 29067 . CTAAAGCATACAATG C 83.0 min_af_0.050000 AF=0.000492;DP=22352;DP4=17230,5161,8,3;HRUN=1;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaagcatacaatgtaaca/\|KAYNVT266\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C\|INFO_REALIGN_3_PRIME);LOF=(N\|GU280_gp10\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	271 NC_045512.2 29187 . C T 206.0 min_af_0.050000 AF=0.002499;DP=10005;DP4=5490,4489,18,7;SB=9;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A305V\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	272 NC_045512.2 29188 . A G 173.0 min_af_0.050000 AF=0.002324;DP=9896;DP4=5450,4414,15,11;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcA/gcG\|A305\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	273 NC_045512.2 29195 . GC G 256.0 min_af_0.050000 AF=0.002255;DP=9758;DP4=5491,4296,11,11;HRUN=5;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ccc/\|P309\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(N\|GU280_gp10\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	274 NC_045512.2 29287 . A T 83.0 min_af_0.050000 AF=0.000864;DP=22003;DP4=4700,17278,0,19;SB=16;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaA/aaT\|K338N\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	275 NC_045512.2 29511 . G T 3323.0 PASS AF=0.076433;DP=1884;DP4=1073,665,70,76;SB=28;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aGt/aTt\|S413I\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	276 NC_045512.2 29800 . G A 706.0 min_af_0.050000 AF=0.046875;DP=704;DP4=154,517,6,27;SB=1

Mercurial > repos > iuc > snpfreqplot

annotate test-data/1085445.vcf @ 3:3d0adeee3f2b draft default tip