snpfreqplot: test-data/1085841.vcf annotate

annotate test-data/1085841.vcf @ 3:3d0adeee3f2b draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit c062eb1cd00ce9d565f3e2f3b042b3dd90d78ce4"

author	iuc
date	Wed, 06 Jan 2021 10:55:53 +0000
parents	1062d6ad6503
children

rev	line source
0 1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	1 ##fileformat=VCFv4.0
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	2 ##fileDate=20201106
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	3 ##source=lofreq call --verbose --ref reference.fa --call-indels --min-cov 5 --max-depth 1000000 --min-bq 30 --min-alt-bq 30 --min-mq 20 --max-mq 255 --min-jq 0 --min-alt-jq 0 --def-alt-jq 0 --sig 0.0005 --bonf dynamic --no-default-filter --no-default-filter -r NC_045512.2:1-14951 -o /data/dnb03/galaxy_db/job_working_directory/012/246/12246264/tmp/lofreq2_call_parallelozwg3m_j/0.vcf.gz reads.bam
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	4 ##reference=reference.fa
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	5 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw Depth">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	6 ##INFO=<ID=AF,Number=1,Type=Float,Description="Allele Frequency">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	7 ##INFO=<ID=SB,Number=1,Type=Integer,Description="Phred-scaled strand bias at this position">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	8 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="Counts for ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	9 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	10 ##INFO=<ID=CONSVAR,Number=0,Type=Flag,Description="Indicates that the variant is a consensus variant (as opposed to a low frequency variant).">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	11 ##INFO=<ID=HRUN,Number=1,Type=Integer,Description="Homopolymer length to the right of report indel position">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	12 ##FILTER=<ID=min_snvqual_77,Description="Minimum SNV Quality (Phred) 77">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	13 ##FILTER=<ID=min_indelqual_63,Description="Minimum Indel Quality (Phred) 63">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	14 ##FILTER=<ID=min_snvqual_81,Description="Minimum SNV Quality (Phred) 81">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	15 ##FILTER=<ID=min_indelqual_67,Description="Minimum Indel Quality (Phred) 67">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	16 ##FILTER=<ID=min_af_0.050000,Description="Minimum allele frequency 0.050000">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	17 ##FILTER=<ID=min_dp_5,Description="Minimum Coverage 5">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	18 ##FILTER=<ID=sb_fdr,Description="Strand-Bias Multiple Testing Correction: fdr corr. pvalue > 0.001000">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	19 ##SnpEffVersion="4.5covid19 (build 2020-04-15 22:26), by Pablo Cingolani"
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	20 ##SnpEffCmd="SnpEff -i vcf -o vcf -formatEff -classic -no-downstream -no-intergenic -no-upstream -stats /data/dnb03/galaxy_db/job_working_directory/012/246/12246344/outputs/galaxy_dataset_bf9af93e-df97-4905-9528-e5733fd0f335.dat NC_045512.2 /data/dnb03/galaxy_db/files/9/7/0/dataset_970a100a-939e-4af8-9511-ce9ea0a545ea.dat "
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	21 ##INFO=<ID=EFF,Number=.,Type=String,Description="Predicted effects for this variant.Format: 'Effect ( Effect_Impact \| Functional_Class \| Codon_Change \| Amino_Acid_Change\| Amino_Acid_length \| Gene_Name \| Transcript_BioType \| Gene_Coding \| Transcript_ID \| Exon_Rank \| Genotype [ \| ERRORS \| WARNINGS ] )' ">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	22 ##INFO=<ID=LOF,Number=.,Type=String,Description="Predicted loss of function effects for this variant. Format: 'Gene_Name \| Gene_ID \| Number_of_transcripts_in_gene \| Percent_of_transcripts_affected'">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	23 ##INFO=<ID=NMD,Number=.,Type=String,Description="Predicted nonsense mediated decay effects for this variant. Format: 'Gene_Name \| Gene_ID \| Number_of_transcripts_in_gene \| Percent_of_transcripts_affected'">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	24 #CHROM POS ID REF ALT QUAL FILTER INFO
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	25 NC_045512.2 40 . CT C 98.0 min_af_0.050000 AF=0.003612;DP=1661;DP4=9,1646,0,6;HRUN=3;SB=0;INDEL
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	26 NC_045512.2 186 . C T 86.0 min_af_0.050000 AF=0.001217;DP=13143;DP4=8948,4173,14,5;SB=0
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	27 NC_045512.2 241 . C T 49314.0 PASS AF=0.994071;DP=7084;DP4=0,1,3410,3672;SB=0
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	28 NC_045512.2 323 . GT G 77.0 min_af_0.050000 AF=0.000621;DP=16109;DP4=3862,12282,3,7;HRUN=4;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tta/\|L21\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tta/\|L21\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tta/\|L21\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tta/\|L21\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	29 NC_045512.2 361 . A G 134.0 min_af_0.050000 AF=0.001169;DP=19673;DP4=7430,12213,13,12;SB=8;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G32\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G32\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G32\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G32\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	30 NC_045512.2 443 . GT G 91.0 min_af_0.050000 AF=0.001118;DP=8048;DP4=5853,2241,5,4;HRUN=4;SB=5;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttg/\|L61\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttg/\|L61\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttg/\|L61\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttg/\|L61\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	31 NC_045512.2 517 . TATG T 177.0 min_af_0.050000 AF=0.002808;DP=4274;DP4=2289,2025,5,7;HRUN=1;SB=2;INDEL;EFF=CODON_DELETION(MODERATE\|\|atg/\|M85\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),CODON_DELETION(MODERATE\|\|atg/\|M85\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|T\|WARNING_TRANSCRIPT_NO_STOP_CODON),CODON_DELETION(MODERATE\|\|atg/\|M85\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|T\|WARNING_TRANSCRIPT_NO_STOP_CODON),CODON_DELETION(MODERATE\|\|atg/\|M85\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	32 NC_045512.2 685 . AAAGTCATTT A 94.0 min_af_0.050000 AF=0.000962;DP=9354;DP4=3244,6121,5,4;HRUN=3;SB=5;INDEL;EFF=CODON_DELETION(MODERATE\|\|aagtcattt/\|KSF141\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),CODON_DELETION(MODERATE\|\|aagtcattt/\|KSF141\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON),CODON_DELETION(MODERATE\|\|aagtcattt/\|KSF141\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON),CODON_DELETION(MODERATE\|\|aagtcattt/\|KSF141\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	33 NC_045512.2 1027 . T C 145.0 min_af_0.050000 AF=0.001334;DP=17235;DP4=13669,3528,24,4;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P254\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P254\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P74\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P74\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	34 NC_045512.2 1115 . A T 221.0 min_af_0.050000 AF=0.003510;DP=6267;DP4=2472,3771,2,21;SB=26;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I284F\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I284F\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I104F\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I104F\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	35 NC_045512.2 1330 . T A 202.0 min_af_0.050000 AF=0.003426;DP=5838;DP4=4195,1622,16,4;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acT/acA\|T355\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|acT/acA\|T355\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|acT/acA\|T175\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|acT/acA\|T175\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	36 NC_045512.2 1559 . G A 86.0 min_af_0.050000 AF=0.002454;DP=4482;DP4=1543,2924,7,6;SB=8;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G432S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G432S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G252S\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G252S\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	37 NC_045512.2 1644 . A C 264.0 min_af_0.050000 AF=0.002193;DP=14589;DP4=11414,3133,13,20;SB=58;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aCc\|N460T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aCc\|N460T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aCc\|N280T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aCc\|N280T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	38 NC_045512.2 1647 . T A 276.0 min_af_0.050000 AF=0.002255;DP=14635;DP4=11359,3236,13,20;SB=56;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTc/aAc\|I461N\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTc/aAc\|I461N\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTc/aAc\|I281N\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTc/aAc\|I281N\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	39 NC_045512.2 1656 . T A 298.0 min_af_0.050000 AF=0.002383;DP=14686;DP4=11280,3363,15,20;SB=48;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTt/gAt\|V464D\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTt/gAt\|V464D\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTt/gAt\|V284D\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTt/gAt\|V284D\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	40 NC_045512.2 1659 . G T 244.0 min_af_0.050000 AF=0.002100;DP=14761;DP4=11364,3356,16,17;SB=33;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G465V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G465V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G285V\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G285V\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	41 NC_045512.2 1702 . T C 340.0 min_af_0.050000 AF=0.002752;DP=14898;DP4=11421,3413,31,15;SB=8;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S479\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S479\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S299\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S299\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	42 NC_045512.2 1710 . C T 138.0 min_af_0.050000 AF=0.001415;DP=14840;DP4=11402,3411,14,10;SB=13;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A482V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A482V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A302V\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A302V\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	43 NC_045512.2 1886 . G A 84.0 min_af_0.050000 AF=0.001060;DP=16031;DP4=3181,12824,3,17;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A541T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A541T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A361T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A361T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	44 NC_045512.2 1914 . G A 136.0 min_af_0.050000 AF=0.001451;DP=14469;DP4=2859,11584,2,19;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R550H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R550H\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R370H\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R370H\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	45 NC_045512.2 1928 . G A 104.0 min_af_0.050000 AF=0.001217;DP=13965;DP4=2465,11480,5,13;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A555T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A555T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A375T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A375T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	46 NC_045512.2 2240 . A T 322.0 min_af_0.050000 AF=0.014104;DP=1418;DP4=289,1109,4,16;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I659F\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I659F\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I479F\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I479F\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	47 NC_045512.2 3037 . C T 49314.0 PASS AF=0.992931;DP=2122;DP4=0,1,1017,1102;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F924\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F924\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F106\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F106\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	48 NC_045512.2 3290 . C G 280.0 min_af_0.050000 AF=0.003124;DP=9284;DP4=7465,1786,19,10;SB=12;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q1009E\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q1009E\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q191E\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q191E\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	49 NC_045512.2 4054 . T C 94.0 min_af_0.050000 AF=0.002820;DP=3546;DP4=864,2667,2,9;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ctT/ctC\|L1263\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ctT/ctC\|L1263\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ctT/ctC\|L445\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ctT/ctC\|L445\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	50 NC_045512.2 4057 . T C 103.0 min_af_0.050000 AF=0.003482;DP=3734;DP4=849,2869,1,15;SB=8;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|caT/caC\|H1264\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|caT/caC\|H1264\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|caT/caC\|H446\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|caT/caC\|H446\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	51 NC_045512.2 4142 . G A 107.0 min_af_0.050000 AF=0.001079;DP=18533;DP4=13023,5480,6,15;SB=40;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gag/Aag\|E1293K\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gag/Aag\|E1293K\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gag/Aag\|E475K\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gag/Aag\|E475K\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	52 NC_045512.2 4185 . G T 89.0 min_af_0.050000 AF=0.001094;DP=18280;DP4=13359,4896,11,11;SB=15;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G1307V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G1307V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G489V\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G489V\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	53 NC_045512.2 4216 . G A 856.0 min_af_0.050000 AF=0.007749;DP=8775;DP4=4191,4511,28,42;SB=7;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttG/ttA\|L1317\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|ttG/ttA\|L1317\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|ttG/ttA\|L499\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ttG/ttA\|L499\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	54 NC_045512.2 4425 . A G 97.0 min_af_0.050000 AF=0.002182;DP=5499;DP4=2348,3137,3,9;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAa/aGa\|K1387R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAa/aGa\|K1387R\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAa/aGa\|K569R\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAa/aGa\|K569R\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	55 NC_045512.2 4428 . T C 501.0 min_af_0.050000 AF=0.007099;DP=5494;DP4=2341,3113,9,31;SB=20;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTa/tCa\|L1388S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTa/tCa\|L1388S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTa/tCa\|L570S\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTa/tCa\|L570S\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	56 NC_045512.2 5118 . T A 201.0 min_af_0.050000 AF=0.037037;DP=270;DP4=132,128,5,5;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTt/tAt\|F1618Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTt/tAt\|F1618Y\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTt/tAt\|F800Y\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTt/tAt\|F800Y\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	57 NC_045512.2 5119 . T A 201.0 min_af_0.050000 AF=0.036900;DP=271;DP4=133,128,5,5;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttT/ttA\|F1618L\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttT/ttA\|F1618L\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttT/ttA\|F800L\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttT/ttA\|F800L\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	58 NC_045512.2 5120 . T A 202.0 min_af_0.050000 AF=0.037175;DP=269;DP4=132,127,5,5;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tat/Aat\|Y1619N\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tat/Aat\|Y1619N\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tat/Aat\|Y801N\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tat/Aat\|Y801N\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	59 NC_045512.2 5284 . C T 151.0 min_af_0.050000 AF=0.002708;DP=5908;DP4=4194,1696,5,11;SB=29;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N1673\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N1673\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N855\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N855\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	60 NC_045512.2 5691 . C T 105.0 min_af_0.050000 AF=0.001564;DP=10869;DP4=8349,2502,13,5;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A1809V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A1809V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A991V\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A991V\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	61 NC_045512.2 5743 . G C 536.0 min_af_0.050000;sb_fdr AF=0.007752;DP=5289;DP4=2762,2483,3,40;SB=95;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaG/gaC\|E1826D\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaG/gaC\|E1826D\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaG/gaC\|E1008D\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaG/gaC\|E1008D\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	62 NC_045512.2 5744 . T C 787.0 min_af_0.050000 AF=0.010650;DP=5258;DP4=2767,2432,13,45;SB=54;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y1827H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y1827H\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y1009H\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y1009H\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	63 NC_045512.2 5765 . G A 141.0 min_af_0.050000 AF=0.003029;DP=5282;DP4=2966,2298,3,15;SB=29;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G1834S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G1834S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G1016S\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G1016S\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	64 NC_045512.2 5805 . G A 81.0 min_af_0.050000 AF=0.001745;DP=6302;DP4=2918,3370,6,6;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C1847Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C1847Y\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C1029Y\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C1029Y\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	65 NC_045512.2 5832 . C T 830.0 min_af_0.050000 AF=0.006126;DP=11754;DP4=2930,8741,13,63;SB=9;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCc/tTc\|S1856F\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCc/tTc\|S1856F\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCc/tTc\|S1038F\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCc/tTc\|S1038F\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	66 NC_045512.2 6173 . AT A 89.0 min_af_0.050000 AF=0.000682;DP=14653;DP4=2727,11919,2,8;HRUN=2;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|att/\|I1970\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|att/\|I1970\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|att/\|I1152\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|att/\|I1152\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	67 NC_045512.2 6177 . AT A 96.0 min_af_0.050000 AF=0.000678;DP=16234;DP4=2638,13599,1,10;HRUN=2;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tat/\|Y1972\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tat/\|Y1972\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tat/\|Y1154\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tat/\|Y1154\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	68 NC_045512.2 6242 . C T 150.0 min_af_0.050000 AF=0.000760;DP=48682;DP4=31997,16628,29,16;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H1993Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H1993Y\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H1175Y\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H1175Y\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	69 NC_045512.2 6245 . G A 107.0 min_af_0.050000 AF=0.000637;DP=48677;DP4=31963,16654,26,10;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtt/Att\|V1994I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtt/Att\|V1994I\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtt/Att\|V1176I\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtt/Att\|V1176I\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	70 NC_045512.2 6254 . G A 103.0 min_af_0.050000 AF=0.000673;DP=40125;DP4=32119,7966,28,5;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1997T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1997T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1179T\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1179T\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	71 NC_045512.2 6255 . C T 95.0 min_af_0.050000 AF=0.000647;DP=40215;DP4=32152,8018,23,5;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A1997V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A1997V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A1179V\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A1179V\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	72 NC_045512.2 6271 . G A 206.0 min_af_0.050000 AF=0.001157;DP=40638;DP4=31649,8914,37,22;SB=21;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acG/acA\|T2002\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|acG/acA\|T2002\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|acG/acA\|T1184\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|acG/acA\|T1184\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	73 NC_045512.2 6310 . C T 134.0 min_af_0.050000 AF=0.000782;DP=40919;DP4=31782,9083,30,7;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|agC/agT\|S2015\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|agC/agT\|S2015\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|agC/agT\|S1197\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|agC/agT\|S1197\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	74 NC_045512.2 6312 . CA C 272.0 min_af_0.050000 AF=0.000811;DP=40674;DP4=31822,9010,27,6;HRUN=4;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaa/\|K2017\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K2017\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K1199\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K1199\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	75 NC_045512.2 6503 . G A 159.0 min_af_0.050000 AF=0.000902;DP=36594;DP4=6191,30357,6,32;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A2080T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A2080T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1262T\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1262T\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	76 NC_045512.2 6525 . C T 93.0 min_af_0.050000 AF=0.000746;DP=34836;DP4=4904,29889,2,27;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T2087I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T2087I\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T1269I\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T1269I\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	77 NC_045512.2 7614 . G C 249.0 min_af_0.050000;sb_fdr AF=0.015337;DP=978;DP4=360,601,14,1;SB=49;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGg/tCg\|W2450S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGg/tCg\|W2450S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGg/tCg\|W1632S\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGg/tCg\|W1632S\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	78 NC_045512.2 7615 . G C 249.0 min_af_0.050000;sb_fdr AF=0.015306;DP=980;DP4=362,601,14,1;SB=48;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tgG/tgC\|W2450C\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tgG/tgC\|W2450C\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tgG/tgC\|W1632C\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tgG/tgC\|W1632C\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	79 NC_045512.2 7813 . TTC T 116.0 min_af_0.050000 AF=0.002437;DP=3283;DP4=1512,1777,6,2;HRUN=2;SB=8;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tctcat/\|SH2519\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tctcat/\|SH2519\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tctcat/\|SH1701\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tctcat/\|SH1701\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	80 NC_045512.2 8084 . GA G 68.0 min_af_0.050000 AF=0.001201;DP=5829;DP4=4545,1301,5,2;HRUN=5;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaa/\|K2608\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K2608\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K1790\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K1790\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	81 NC_045512.2 8927 . GT G 154.0 min_af_0.050000 AF=0.001826;DP=7669;DP4=5767,1892,6,8;HRUN=5;SB=20;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F2889\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F2889\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F126\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F126\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	82 NC_045512.2 8964 . CA C 94.0 min_af_0.050000 AF=0.001206;DP=7460;DP4=5950,1508,7,2;HRUN=4;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaa/\|K2901\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K2901\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K138\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K138\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	83 NC_045512.2 10448 . C A 49314.0 PASS AF=0.941326;DP=7465;DP4=269,49,5438,1700;SB=33;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ccc/Acc\|P3395T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ccc/Acc\|P3395T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ccc/Acc\|P132T\|305\|ORF1ab\|protein_coding\|CODING\|YP_009725301.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ccc/Acc\|P132T\|305\|ORF1ab\|protein_coding\|CODING\|YP_009742612.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	84 NC_045512.2 10527 . CT C 78.0 min_af_0.050000 AF=0.001718;DP=4074;DP4=1930,2159,3,4;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tgt/\|C3423\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tgt/\|C3423\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tgt/\|C160\|305\|ORF1ab\|protein_coding\|CODING\|YP_009725301.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tgt/\|C160\|305\|ORF1ab\|protein_coding\|CODING\|YP_009742612.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	85 NC_045512.2 10641 . C T 127.0 min_af_0.050000 AF=0.002277;DP=7027;DP4=2613,4397,6,10;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T3459M\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T3459M\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T196M\|305\|ORF1ab\|protein_coding\|CODING\|YP_009725301.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T196M\|305\|ORF1ab\|protein_coding\|CODING\|YP_009742612.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	86 NC_045512.2 10679 . T C 886.0 min_af_0.050000 AF=0.009916;DP=6656;DP4=2234,4351,11,58;SB=29;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y3472H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y3472H\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y209H\|305\|ORF1ab\|protein_coding\|CODING\|YP_009725301.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y209H\|305\|ORF1ab\|protein_coding\|CODING\|YP_009742612.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	87 NC_045512.2 10790 . C T 90.0 min_af_0.050000 AF=0.003128;DP=2877;DP4=1592,1275,6,3;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H3509Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H3509Y\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H246Y\|305\|ORF1ab\|protein_coding\|CODING\|YP_009725301.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H246Y\|305\|ORF1ab\|protein_coding\|CODING\|YP_009742612.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	88 NC_045512.2 11071 . G GTTC 49314.0 PASS AF=0.906657;DP=17109;DP4=1189,441,11887,3625;HRUN=2;SB=29;INDEL;EFF=CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCTTt\|F3604FF\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|GTTC\|INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCTTt\|F3604FF\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|GTTC\|INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCTTt\|F35FF\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|GTTC\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCTTt\|F35FF\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|GTTC\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	89 NC_045512.2 11074 . C CTTCT 5009.0 min_af_0.050000 AF=0.026098;DP=17511;DP4=12777,4287,354,103;HRUN=8;SB=6;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/ttCTTTt\|F3604FF?\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|CTTCT\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/ttCTTTt\|F3604FF?\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|CTTCT\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/ttCTTTt\|F35FF?\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|CTTCT\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/ttCTTTt\|F35FF?\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|CTTCT\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	90 NC_045512.2 11075 . T TTC 9644.0 min_af_0.050000 AF=0.025227;DP=17521;DP4=12767,4323,346,96;HRUN=8;SB=10;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/ttCTt\|F3604F?\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|TTC\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/ttCTt\|F3604F?\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|TTC\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/ttCTt\|F35F?\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|TTC\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/ttCTt\|F35F?\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|TTC\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	91 NC_045512.2 11075 . T TTCC 386.0 min_af_0.050000 AF=0.001826;DP=17521;DP4=12767,4323,24,8;HRUN=8;SB=0;INDEL;EFF=CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCCTt\|F3604FL\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|TTCC\|INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCCTt\|F3604FL\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|TTCC\|INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCCTt\|F35FL\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|TTCC\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCCTt\|F35FL\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|TTCC\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	92 NC_045512.2 11076 . T TC 389.0 min_af_0.050000 AF=0.003118;DP=17637;DP4=13102,4493,37,18;HRUN=8;SB=6;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/ttCt\|F3604F?\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|TC),FRAME_SHIFT(HIGH\|\|ttt/ttCt\|F3604F?\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|TC),FRAME_SHIFT(HIGH\|\|ttt/ttCt\|F35F?\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|TC\|WARNING_TRANSCRIPT_NO_START_CODON),FRAME_SHIFT(HIGH\|\|ttt/ttCt\|F35F?\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|TC\|WARNING_TRANSCRIPT_NO_START_CODON);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	93 NC_045512.2 11077 . T C 724.0 min_af_0.050000 AF=0.014504;DP=17650;DP4=13007,4376,127,139;SB=199;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttT/ttC\|F3604\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ttT/ttC\|F3604\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ttT/ttC\|F35\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ttT/ttC\|F35\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	94 NC_045512.2 11083 . G T 2124.0 min_af_0.050000 AF=0.013410;DP=17673;DP4=12902,4511,165,85;SB=23;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L3606F\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L3606F\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L37F\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L37F\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	95 NC_045512.2 11103 . CT C 118.0 min_af_0.050000 AF=0.000779;DP=17972;DP4=13160,4835,11,3;HRUN=4;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F3614\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F3614\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F45\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F45\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	96 NC_045512.2 11750 . C T 1094.0 min_af_0.050000 AF=0.010133;DP=7895;DP4=4176,3636,40,42;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctc/Ttc\|L3829F\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctc/Ttc\|L3829F\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctc/Ttc\|L260F\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctc/Ttc\|L260F\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	97 NC_045512.2 11917 . A G 90.0 min_af_0.050000 AF=0.000781;DP=25595;DP4=14208,11360,10,11;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tcA/tcG\|S3884\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),SYNONYMOUS_CODING(LOW\|SILENT\|tcA/tcG\|S3884\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),SYNONYMOUS_CODING(LOW\|SILENT\|tcA/tcG\|S25\|82\|ORF1ab\|protein_coding\|CODING\|YP_009725303.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tcA/tcG\|S25\|82\|ORF1ab\|protein_coding\|CODING\|YP_009742614.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	98 NC_045512.2 12138 . C T 89.0 min_af_0.050000 AF=0.000859;DP=22110;DP4=5911,16177,6,13;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A3958V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A3958V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A16V\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A16V\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	99 NC_045512.2 12152 . G A 99.0 min_af_0.050000 AF=0.000914;DP=21891;DP4=5746,16113,8,17;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A3963T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A3963T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A21T\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A21T\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	100 NC_045512.2 12458 . A G 2756.0 min_af_0.050000;sb_fdr AF=0.011478;DP=15944;DP4=12445,3309,173,13;SB=65;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aca/Gca\|T4065A\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aca/Gca\|T4065A\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aca/Gca\|T123A\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aca/Gca\|T123A\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	101 NC_045512.2 12708 . C T 111.0 min_af_0.050000 AF=0.001289;DP=14745;DP4=3477,11246,5,15;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A4148V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A4148V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A8V\|112\|ORF1ab\|protein_coding\|CODING\|YP_009725305.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A8V\|112\|ORF1ab\|protein_coding\|CODING\|YP_009742616.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	102 NC_045512.2 13006 . T C 101.0 min_af_0.050000 AF=0.001060;DP=17925;DP4=4485,13411,8,13;SB=6;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A4247\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A4247\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A107\|112\|ORF1ab\|protein_coding\|CODING\|YP_009725305.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A107\|112\|ORF1ab\|protein_coding\|CODING\|YP_009742616.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	103 NC_045512.2 13011 . C T 98.0 min_af_0.050000 AF=0.000962;DP=19745;DP4=4418,15301,7,13;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T4249I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T4249I\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T109I\|112\|ORF1ab\|protein_coding\|CODING\|YP_009725305.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T109I\|112\|ORF1ab\|protein_coding\|CODING\|YP_009742616.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	104 NC_045512.2 13034 . G A 121.0 min_af_0.050000 AF=0.000738;DP=40648;DP4=24125,16482,22,13;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4257T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4257T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	105 NC_045512.2 13050 . C T 85.0 min_af_0.050000 AF=0.000605;DP=41322;DP4=24182,17103,17,12;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gTc\|A4262V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gTc\|A4262V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gTc\|A9V\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gTc\|A9V\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	106 NC_045512.2 13073 . T C 82.0 min_af_0.050000 AF=0.000603;DP=41477;DP4=24012,17430,21,6;SB=13;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgt/Cgt\|C4270R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgt/Cgt\|C4270R\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgt/Cgt\|C17R\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgt/Cgt\|C17R\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	107 NC_045512.2 13094 . G A 200.0 min_af_0.050000 AF=0.001158;DP=31086;DP4=23605,7439,25,14;SB=10;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A4277T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A4277T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A24T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A24T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	108 NC_045512.2 13123 . TG T 164.0 min_af_0.050000 AF=0.000748;DP=30768;DP4=22959,7835,17,6;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gga/\|G4288\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|gga/\|G4288\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|gga/\|G35\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|gga/\|G35\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.11)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	109 NC_045512.2 13129 . A G 142.0 min_af_0.050000 AF=0.001058;DP=31184;DP4=23121,8007,32,10;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G4288\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G4288\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G35\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G35\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	110 NC_045512.2 13235 . G A 137.0 min_af_0.050000 AF=0.001127;DP=28406;DP4=8123,20243,5,29;SB=10;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4324T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4324T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A71T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A71T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	111 NC_045512.2 13240 . G A 150.0 min_af_0.050000 AF=0.001122;DP=28523;DP4=8126,20358,10,25;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tcG/tcA\|S4325\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|tcG/tcA\|S4325\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|tcG/tcA\|S72\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tcG/tcA\|S72\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	112 NC_045512.2 13260 . G A 143.0 min_af_0.050000 AF=0.000976;DP=31774;DP4=8264,23460,9,25;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C4332Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C4332Y\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C79Y\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C79Y\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	113 NC_045512.2 13299 . TA T 128.0 min_af_0.050000 AF=0.000587;DP=30690;DP4=7825,22976,5,13;HRUN=4;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaa/\|K4346\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K4346\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K93\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K93\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.11)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	114 NC_045512.2 13345 . T C 171.0 min_af_0.050000 AF=0.001096;DP=32859;DP4=10582,22225,23,18;SB=26;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P4360\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P4360\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P107\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P107\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	115 NC_045512.2 13346 . G A 110.0 min_af_0.050000 AF=0.000849;DP=32974;DP4=10653,22282,18,12;SB=25;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtg/Atg\|V4361M\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtg/Atg\|V4361M\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtg/Atg\|V108M\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtg/Atg\|V108M\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	116 NC_045512.2 13350 . GT G 190.0 min_af_0.050000 AF=0.000733;DP=32739;DP4=10556,22222,8,16;HRUN=4;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F4363\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F4363\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F110\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F110\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.11)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	117 NC_045512.2 13385 . G A 159.0 min_af_0.050000 AF=0.002573;DP=10105;DP4=7996,2074,27,4;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G4374S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G4374S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G121S\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G121S\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	118 NC_045512.2 13436 . C T 101.0 min_af_0.050000 AF=0.001858;DP=9150;DP4=6864,2269,10,7;SB=8;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L4391F\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L4391F\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L138F\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L138F\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	119 NC_045512.2 13541 . CT C 181.0 min_af_0.050000 AF=0.001621;DP=9872;DP4=2602,7324,2,14;HRUN=4;SB=5;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F4427\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F35\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.04)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	120 NC_045512.2 13565 . T G 125.0 min_af_0.050000 AF=0.001695;DP=10031;DP4=2520,7488,9,8;SB=16;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTa/gGa\|V4434G\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTa/gGa\|V42G\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	121 NC_045512.2 13914 . TA T 229.0 min_af_0.050000 AF=0.001064;DP=25367;DP4=5262,20193,5,22;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aag/\|K4552\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aag/\|K160\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	122 NC_045512.2 13924 . TG T 67.0 min_af_0.050000 AF=0.000391;DP=25562;DP4=4889,20711,5,5;HRUN=2;SB=15;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tgg/\|W4554\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tgg/\|W162\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	123 NC_045512.2 13966 . G A 142.0 min_af_0.050000 AF=0.001330;DP=18048;DP4=14913,3101,28,2;SB=8;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A4568T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A176T\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	124 NC_045512.2 13982 . G A 333.0 min_af_0.050000 AF=0.002735;DP=16821;DP4=13274,3494,26,21;SB=36;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R4573H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R181H\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	125 NC_045512.2 14061 . A G 95.0 min_af_0.050000 AF=0.001054;DP=17076;DP4=12760,4296,16,4;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttA/ttG\|L4599\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G),SYNONYMOUS_CODING(LOW\|SILENT\|ttA/ttG\|L207\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	126 NC_045512.2 14408 . C T 49314.0 PASS AF=0.993302;DP=1941;DP4=0,0,964,976;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cTt\|P4715L\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cTt\|P323L\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	127 NC_045512.2 14581 . C T 149.0 min_af_0.050000 AF=0.001747;DP=13165;DP4=10634,2505,19,6;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cac/Tac\|H4773Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cac/Tac\|H381Y\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	128 NC_045512.2 15324 . C T 49314.0 PASS AF=0.991877;DP=9972;DP4=5,3,7254,2709;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N5020\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N628\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	129 NC_045512.2 15481 . T C 752.0 min_af_0.050000 AF=0.005927;DP=10967;DP4=2564,8293,51,45;SB=91;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tca/Cca\|S5073P\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tca/Cca\|S681P\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	130 NC_045512.2 15556 . G A 135.0 min_af_0.050000 AF=0.001203;DP=22441;DP4=17610,4794,25,6;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A5098T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A706T\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	131 NC_045512.2 15682 . T A 2121.0 min_af_0.050000 AF=0.014388;DP=9730;DP4=4861,4725,78,64;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tat/Aat\|Y5140N\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tat/Aat\|Y748N\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	132 NC_045512.2 15685 . T A 2159.0 min_af_0.050000 AF=0.014534;DP=9770;DP4=4870,4756,79,64;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttg/Atg\|L5141M\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttg/Atg\|L749M\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	133 NC_045512.2 15723 . T C 118.0 min_af_0.050000 AF=0.001985;DP=9572;DP4=5143,4404,11,9;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaT/gaC\|D5153\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C),SYNONYMOUS_CODING(LOW\|SILENT\|gaT/gaC\|D761\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	134 NC_045512.2 15873 . AT A 114.0 min_af_0.050000 AF=0.000652;DP=23004;DP4=18635,4358,13,2;HRUN=4;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tgc/\|C5205\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tgc/\|C813\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	135 NC_045512.2 15878 . G A 148.0 min_af_0.050000;sb_fdr AF=0.001155;DP=23368;DP4=18628,4643,86,4;SB=43;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C5205Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C813Y\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	136 NC_045512.2 15890 . C T 95.0 min_af_0.050000 AF=0.000866;DP=21937;DP4=16930,4986,15,4;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T5209I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T817I\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	137 NC_045512.2 15962 . G A 120.0 min_af_0.050000 AF=0.001077;DP=23209;DP4=17206,5975,18,9;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGc/gAc\|G5233D\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGc/gAc\|G841D\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	138 NC_045512.2 16073 . C T 96.0 min_af_0.050000 AF=0.000886;DP=22579;DP4=5112,17438,7,16;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A5270V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A878V\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	139 NC_045512.2 18687 . CT C 108.0 min_af_0.050000 AF=0.000886;DP=13539;DP4=10518,3030,9,3;HRUN=4;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tcc/\|S6143\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tcc/\|S218\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	140 NC_045512.2 18744 . C T 102.0 min_af_0.050000 AF=0.001253;DP=13571;DP4=10434,3113,14,6;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|taC/taT\|Y6160\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),SYNONYMOUS_CODING(LOW\|SILENT\|taC/taT\|Y235\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	141 NC_045512.2 18941 . A T 84.0 min_af_0.050000 AF=0.000782;DP=26854;DP4=15021,11802,3,18;SB=37;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gTt\|D6226V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gTt\|D301V\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	142 NC_045512.2 18959 . C T 144.0 min_af_0.050000 AF=0.001301;DP=18445;DP4=14957,3457,18,7;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCg/gTg\|A6232V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCg/gTg\|A307V\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	143 NC_045512.2 18998 . C T 103.0 min_af_0.050000 AF=0.001038;DP=18304;DP4=14106,4171,15,5;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A6245V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A320V\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	144 NC_045512.2 19029 . C T 93.0 min_af_0.050000 AF=0.001027;DP=18494;DP4=14228,4239,16,6;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|caC/caT\|H6255\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),SYNONYMOUS_CODING(LOW\|SILENT\|caC/caT\|H330\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	145 NC_045512.2 19263 . C T 137.0 min_af_0.050000 AF=0.001291;DP=17047;DP4=2815,14204,4,21;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N6333\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N408\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	146 NC_045512.2 19610 . C T 203.0 min_af_0.050000 AF=0.001549;DP=18718;DP4=15146,3539,29,1;SB=14;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T6449I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T524I\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	147 NC_045512.2 19802 . G A 101.0 min_af_0.050000 AF=0.001022;DP=19577;DP4=4269,15277,7,16;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R6513H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R61H\|345\|ORF1ab\|protein_coding\|CODING\|YP_009725310.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	148 NC_045512.2 20791 . G A 95.0 min_af_0.050000 AF=0.001279;DP=13295;DP4=2630,10646,5,12;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A6843T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A45T\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	149 NC_045512.2 20839 . G A 121.0 min_af_0.050000 AF=0.000944;DP=25429;DP4=14138,11258,14,13;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gta/Ata\|V6859I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gta/Ata\|V61I\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	150 NC_045512.2 20868 . TG T 93.0 min_af_0.050000 AF=0.000630;DP=17449;DP4=13993,3501,10,1;HRUN=2;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ggt/\|G6869\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ggt/\|G71\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.04)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	151 NC_045512.2 20872 . G A 91.0 min_af_0.050000 AF=0.001077;DP=17635;DP4=13978,3635,14,5;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A6870T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A72T\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	152 NC_045512.2 20937 . G A 83.0 min_af_0.050000 AF=0.001049;DP=17166;DP4=12997,4144,14,5;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acG/acA\|T6891\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),SYNONYMOUS_CODING(LOW\|SILENT\|acG/acA\|T93\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	153 NC_045512.2 21054 . C T 145.0 min_af_0.050000 AF=0.001517;DP=15825;DP4=3477,12313,7,19;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|taC/taT\|Y6930\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),SYNONYMOUS_CODING(LOW\|SILENT\|taC/taT\|Y132\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	154 NC_045512.2 21164 . T A 117.0 min_af_0.050000 AF=0.005592;DP=2861;DP4=2184,652,14,2;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTa/aAa\|I6967K\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTa/aAa\|I169K\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	155 NC_045512.2 21417 . A T 140.0 min_af_0.050000 AF=0.002057;DP=8266;DP4=6203,2043,9,8;SB=13;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaA/aaT\|K7051N\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaA/aaT\|K253N\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	156 NC_045512.2 21600 . GTCAGTGTGTTAATCT G 82.0 min_af_0.050000 AF=0.000897;DP=8916;DP4=2343,6600,4,4;HRUN=1;SB=6;INDEL;EFF=CODON_DELETION(MODERATE\|\|cagtgtgttaatctt/\|QCVNL14\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	157 NC_045512.2 21634 . A AC 203.0 min_af_0.050000 AF=0.002013;DP=8943;DP4=2367,6561,6,12;HRUN=5;SB=2;INDEL;EFF=FRAME_SHIFT(HIGH\|\|cct/ccCt\|P26P?\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|AC\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	158 NC_045512.2 21650 . A C 287.0 min_af_0.050000 AF=0.003285;DP=8827;DP4=2290,6504,4,26;SB=8;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aat/Cat\|N30H\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	159 NC_045512.2 21656 . TTCAC T 110.0 min_af_0.050000 AF=0.001142;DP=8756;DP4=2272,6523,2,8;HRUN=3;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttcaca/\|FT32\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	160 NC_045512.2 21714 . CT C 125.0 min_af_0.050000 AF=0.000856;DP=15185;DP4=7852,7357,12,1;HRUN=1;SB=24;INDEL;EFF=FRAME_SHIFT(HIGH\|\|act/\|T51\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	161 NC_045512.2 21781 . C T 708.0 min_af_0.050000 AF=0.006219;DP=9809;DP4=7177,2567,44,20;SB=4;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acC/acT\|T73\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	162 NC_045512.2 21875 . AT A 91.0 min_af_0.050000 AF=0.001868;DP=4283;DP4=2040,2238,3,5;HRUN=5;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F106\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A\|INFO_REALIGN_3_PRIME);LOF=(S\|GU280_gp02\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	163 NC_045512.2 22000 . CA C 220.0 min_af_0.050000 AF=0.001903;DP=10510;DP4=4000,6529,5,15;HRUN=5;SB=5;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aac/\|N148\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C\|INFO_REALIGN_3_PRIME);LOF=(S\|GU280_gp02\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	164 NC_045512.2 22591 . C T 100.0 min_af_0.050000 AF=0.001016;DP=18694;DP4=14731,3931,20,5;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N343\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	165 NC_045512.2 22643 . T A 829.0 min_af_0.050000 AF=0.004008;DP=19462;DP4=14955,4414,61,17;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgt/Agt\|C361S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	166 NC_045512.2 22644 . G C 795.0 min_af_0.050000 AF=0.003931;DP=19588;DP4=14973,4528,60,17;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGt/tCt\|C361S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	167 NC_045512.2 22645 . T A 799.0 min_af_0.050000 AF=0.003933;DP=19578;DP4=14947,4530,66,17;SB=2;EFF=STOP_GAINED(HIGH\|NONSENSE\|tgT/tgA\|C361*\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	168 NC_045512.2 22858 . C T 109.0 min_af_0.050000 AF=0.001319;DP=15163;DP4=3803,11332,6,15;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C432\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	169 NC_045512.2 23132 . GT G 317.0 min_af_0.050000 AF=0.003693;DP=5687;DP4=1851,3852,7,14;HRUN=3;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tgt/\|C525\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(S\|GU280_gp02\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	170 NC_045512.2 23143 . TA T 83.0 min_af_0.050000 AF=0.001452;DP=5508;DP4=1682,3843,2,6;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aag/\|K529\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T\|INFO_REALIGN_3_PRIME);LOF=(S\|GU280_gp02\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	171 NC_045512.2 23334 . CT C 89.0 min_af_0.050000 AF=0.001077;DP=8358;DP4=4251,4134,6,3;HRUN=4;SB=2;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F592\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C\|INFO_REALIGN_3_PRIME);LOF=(S\|GU280_gp02\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	172 NC_045512.2 23403 . A G 49314.0 PASS AF=0.991572;DP=17205;DP4=2,5,4395,12795;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gGt\|D614G\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	173 NC_045512.2 23412 . G A 108.0 min_af_0.050000 AF=0.001113;DP=17071;DP4=4291,12756,5,17;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C617Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	174 NC_045512.2 24672 . CA C 86.0 min_af_0.050000 AF=0.003731;DP=1608;DP4=428,1183,3,3;HRUN=5;SB=7;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aga/\|R1039\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C\|INFO_REALIGN_3_PRIME);LOF=(S\|GU280_gp02\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	175 NC_045512.2 24729 . C T 192.0 min_af_0.050000 AF=0.001379;DP=21760;DP4=17349,4370,24,9;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A1056V\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	176 NC_045512.2 24770 . G A 105.0 min_af_0.050000 AF=0.000925;DP=22693;DP4=17909,4759,16,5;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1070T\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	177 NC_045512.2 24942 . A T 299.0 min_af_0.050000 AF=0.001816;DP=22578;DP4=5252,17272,8,35;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gTt\|D1127V\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	178 NC_045512.2 24966 . A T 199.0 min_af_0.050000 AF=0.001429;DP=22394;DP4=5267,17072,19,16;SB=40;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aTc\|N1135I\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	179 NC_045512.2 25047 . C T 528.0 min_af_0.050000 AF=0.002900;DP=20688;DP4=4536,16083,13,51;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCa/cTa\|P1162L\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	180 NC_045512.2 25607 . C T 94.0 min_af_0.050000 AF=0.001450;DP=9658;DP4=1996,7642,6,11;SB=8;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A72V\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	181 NC_045512.2 25646 . T G 198.0 min_af_0.050000;sb_fdr AF=0.002768;DP=9032;DP4=2052,6950,24,1;SB=140;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTg/tGg\|L85W\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	182 NC_045512.2 25797 . CA C 71.0 min_af_0.050000 AF=0.003369;DP=1484;DP4=700,794,2,3;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aac/\|N137\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|C\|INFO_REALIGN_3_PRIME);LOF=(ORF3a\|GU280_gp03\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	183 NC_045512.2 25986 . A G 91.0 min_af_0.050000 AF=0.001282;DP=14817;DP4=11479,3318,14,6;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|aaA/aaG\|K198\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	184 NC_045512.2 26042 . C T 987.0 min_af_0.050000 AF=0.005497;DP=15281;DP4=11400,3796,56,29;SB=12;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T217I\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	185 NC_045512.2 26044 . C G 956.0 min_af_0.050000 AF=0.005347;DP=15148;DP4=11320,3738,53,28;SB=12;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q218E\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	186 NC_045512.2 26046 . A G 977.0 min_af_0.050000 AF=0.005456;DP=15213;DP4=11325,3797,56,29;SB=12;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|caA/caG\|Q218\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	187 NC_045512.2 26057 . A C 216.0 min_af_0.050000 AF=0.003379;DP=9469;DP4=5738,3692,20,16;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAc/gCc\|D222A\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	188 NC_045512.2 26103 . T A 273.0 min_af_0.050000;sb_fdr AF=0.004015;DP=6475;DP4=3141,3308,24,2;SB=54;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gtT/gtA\|V237\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	189 NC_045512.2 26120 . A G 249.0 min_af_0.050000 AF=0.003769;DP=6368;DP4=3269,3073,11,13;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAt/cGt\|H243R\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	190 NC_045512.2 26271 . A G 91.0 min_af_0.050000 AF=0.001094;DP=14624;DP4=3502,11102,5,11;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acA/acG\|T9\|75\|E\|protein_coding\|CODING\|GU280_gp04\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	191 NC_045512.2 26542 . C A 757.0 min_af_0.050000 AF=0.013404;DP=3581;DP4=374,3154,5,44;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aAt\|T7N\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	192 NC_045512.2 26545 . T G 796.0 min_af_0.050000 AF=0.003886;DP=21356;DP4=18019,3242,44,43;SB=130;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTt/aGt\|I8S\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	193 NC_045512.2 26554 . A G 214.0 min_af_0.050000 AF=0.001557;DP=21840;DP4=18203,3602,20,15;SB=36;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAa/gGa\|E11G\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	194 NC_045512.2 26561 . TA T 71.0 min_af_0.050000 AF=0.000541;DP=22195;DP4=18331,3864,10,2;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aag/\|K15\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T\|INFO_REALIGN_3_PRIME);LOF=(M\|GU280_gp05\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	195 NC_045512.2 26635 . C T 99.0 min_af_0.050000 AF=0.000866;DP=24240;DP4=19220,4993,16,7;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gTc\|A38V\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	196 NC_045512.2 26640 . G A 93.0 min_af_0.050000 AF=0.000829;DP=24139;DP4=19141,4967,15,6;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A40T\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	197 NC_045512.2 26695 . G C 115.0 min_af_0.050000;sb_fdr AF=0.001784;DP=8971;DP4=4073,4876,0,17;SB=41;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGg/tCg\|W58S\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	198 NC_045512.2 26713 . GT G 113.0 min_af_0.050000 AF=0.001199;DP=9176;DP4=4368,4832,4,7;HRUN=4;SB=2;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F65\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(M\|GU280_gp05\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	199 NC_045512.2 26763 . G A 146.0 min_af_0.050000 AF=0.001152;DP=23441;DP4=5135,18267,7,21;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A81T\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	200 NC_045512.2 26779 . GTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCT G 177.0 min_af_0.050000 AF=0.000808;DP=23525;DP4=5243,18334,4,15;HRUN=1;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gtaggcttgatgtggctcagctacttcattgcttctttc/\|VGLMWLSYFIASF88\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(M\|GU280_gp05\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	201 NC_045512.2 26889 . C T 117.0 min_af_0.050000 AF=0.000870;DP=34472;DP4=15378,19050,13,22;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cca/Tca\|P123S\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	202 NC_045512.2 27335 . C T 287.0 min_af_0.050000 AF=0.003501;DP=8284;DP4=4742,3509,19,12;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T45I\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	203 NC_045512.2 27344 . A T 384.0 min_af_0.050000 AF=0.004501;DP=8220;DP4=4741,3441,25,12;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAa/aTa\|K48I\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	204 NC_045512.2 27345 . A T 406.0 min_af_0.050000 AF=0.004619;DP=8226;DP4=4747,3439,27,12;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaA/aaT\|K48N\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	205 NC_045512.2 27354 . A G 302.0 min_af_0.050000 AF=0.003828;DP=7837;DP4=4560,3244,20,10;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|caA/caG\|Q51\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	206 NC_045512.2 27377 . A G 134.0 min_af_0.050000 AF=0.001660;DP=15056;DP4=4443,10575,10,23;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAg/gGg\|E59G\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	207 NC_045512.2 28147 . CT C 80.0 min_af_0.050000 AF=0.000570;DP=19282;DP4=16335,2941,9,2;HRUN=4;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F86\|121\|ORF8\|protein_coding\|CODING\|GU280_gp09\|1\|C\|INFO_REALIGN_3_PRIME);LOF=(ORF8\|GU280_gp09\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	208 NC_045512.2 28148 . T C 104.0 min_af_0.050000 AF=0.000984;DP=19305;DP4=16333,2941,17,2;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P85\|121\|ORF8\|protein_coding\|CODING\|GU280_gp09\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	209 NC_045512.2 28214 . CT C 129.0 min_af_0.050000 AF=0.000815;DP=20860;DP4=16749,4135,13,4;HRUN=5;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tta/\|L109\|121\|ORF8\|protein_coding\|CODING\|GU280_gp09\|1\|C\|INFO_REALIGN_3_PRIME);LOF=(ORF8\|GU280_gp09\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	210 NC_045512.2 28292 . CA C 132.0 min_af_0.050000 AF=0.001453;DP=8257;DP4=4665,3660,7,5;HRUN=4;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aat/\|N8\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	211 NC_045512.2 28333 . C A 206.0 min_af_0.050000 AF=0.001636;DP=22002;DP4=4970,16986,18,21;SB=28;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccC/ccA\|P20\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	212 NC_045512.2 28346 . G T 310.0 min_af_0.050000 AF=0.001876;DP=21859;DP4=4946,16852,23,24;SB=41;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggc/Tgc\|G25C\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	213 NC_045512.2 28383 . CA C 77.0 min_af_0.050000 AF=0.000532;DP=20671;DP4=4000,16733,0,11;HRUN=4;SB=8;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaa/\|K38\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C\|INFO_REALIGN_3_PRIME);LOF=(N\|GU280_gp10\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	214 NC_045512.2 28436 . G A 104.0 min_af_0.050000 AF=0.000961;DP=22898;DP4=6247,16623,4,20;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A55T\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	215 NC_045512.2 28754 . C T 81.0 min_af_0.050000 AF=0.000962;DP=16630;DP4=11578,5033,11,5;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ctt/Ttt\|L161F\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	216 NC_045512.2 28801 . C A 117.0 min_af_0.050000 AF=0.001334;DP=15738;DP4=11800,3891,9,16;SB=44;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|agC/agA\|S176R\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	217 NC_045512.2 28801 . C T 109.0 min_af_0.050000 AF=0.001271;DP=15738;DP4=11800,3891,14,8;SB=6;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|agC/agT\|S176\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	218 NC_045512.2 28987 . CCAA C 913.0 min_af_0.050000 AF=0.003748;DP=15742;DP4=3519,12216,12,47;HRUN=2;SB=0;INDEL;EFF=CODON_DELETION(MODERATE\|\|caa/\|Q242\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	219 NC_045512.2 29029 . T C 3848.0 min_af_0.050000 AF=0.009791;DP=27984;DP4=15396,12289,102,187;SB=111;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A252\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	220 NC_045512.2 29031 . A G 125.0 min_af_0.050000 AF=0.000927;DP=28044;DP4=15450,12550,11,25;SB=24;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAg/gGg\|E253G\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	221 NC_045512.2 29035 . T C 147.0 min_af_0.050000 AF=0.001031;DP=28124;DP4=15520,12541,37,19;SB=9;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A254\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	222 NC_045512.2 29039 . A T 8605.0 min_af_0.050000 AF=0.018320;DP=28330;DP4=15395,12395,186,341;SB=193;EFF=STOP_GAINED(HIGH\|NONSENSE\|Aag/Tag\|K256*\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	223 NC_045512.2 29049 . G A 832.0 min_af_0.050000 AF=0.004347;DP=19553;DP4=15587,3863,75,15;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGg/cAg\|R259Q\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	224 NC_045512.2 29077 . C T 81.0 min_af_0.050000 AF=0.000856;DP=19853;DP4=15391,4437,15,4;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|taC/taT\|Y268\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	225 NC_045512.2 29127 . AT A 99.0 min_af_0.050000 AF=0.000637;DP=20411;DP4=15790,4632,10,3;HRUN=4;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F286\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A\|INFO_REALIGN_3_PRIME);LOF=(N\|GU280_gp10\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	226 NC_045512.2 29187 . C T 217.0 min_af_0.050000 AF=0.002703;DP=9249;DP4=5107,4112,17,11;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A305V\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	227 NC_045512.2 29188 . A G 195.0 min_af_0.050000 AF=0.002515;DP=9144;DP4=5068,4049,15,8;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcA/gcG\|A305\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	228 NC_045512.2 29195 . GC G 248.0 min_af_0.050000 AF=0.002343;DP=8962;DP4=5061,3918,12,9;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ccc/\|P309\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(N\|GU280_gp10\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	229 NC_045512.2 29377 . TA T 103.0 min_af_0.050000 AF=0.001989;DP=4525;DP4=3220,1474,4,5;HRUN=5;SB=8;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aag/\|K370\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T\|INFO_REALIGN_3_PRIME);LOF=(N\|GU280_gp10\|1\|1.00)

Mercurial > repos > iuc > snpfreqplot

annotate test-data/1085841.vcf @ 3:3d0adeee3f2b draft default tip