snpfreqplot: test-data/1085080.vcf annotate

annotate test-data/1085080.vcf @ 3:3d0adeee3f2b draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit c062eb1cd00ce9d565f3e2f3b042b3dd90d78ce4"

author	iuc
date	Wed, 06 Jan 2021 10:55:53 +0000
parents	1062d6ad6503
children

rev	line source
0 1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	1 ##fileformat=VCFv4.0
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	2 ##fileDate=20201106
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	3 ##source=lofreq call --verbose --ref reference.fa --call-indels --min-cov 5 --max-depth 1000000 --min-bq 30 --min-alt-bq 30 --min-mq 20 --max-mq 255 --min-jq 0 --min-alt-jq 0 --def-alt-jq 0 --sig 0.0005 --bonf dynamic --no-default-filter --no-default-filter -r NC_045512.2:1-14951 -o /data/dnb03/galaxy_db/job_working_directory/012/246/12246261/tmp/lofreq2_call_parallelpau7d8kw/0.vcf.gz reads.bam
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	4 ##reference=reference.fa
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	5 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw Depth">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	6 ##INFO=<ID=AF,Number=1,Type=Float,Description="Allele Frequency">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	7 ##INFO=<ID=SB,Number=1,Type=Integer,Description="Phred-scaled strand bias at this position">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	8 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="Counts for ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	9 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	10 ##INFO=<ID=CONSVAR,Number=0,Type=Flag,Description="Indicates that the variant is a consensus variant (as opposed to a low frequency variant).">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	11 ##INFO=<ID=HRUN,Number=1,Type=Integer,Description="Homopolymer length to the right of report indel position">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	12 ##FILTER=<ID=min_snvqual_76,Description="Minimum SNV Quality (Phred) 76">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	13 ##FILTER=<ID=min_indelqual_61,Description="Minimum Indel Quality (Phred) 61">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	14 ##FILTER=<ID=min_snvqual_80,Description="Minimum SNV Quality (Phred) 80">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	15 ##FILTER=<ID=min_indelqual_65,Description="Minimum Indel Quality (Phred) 65">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	16 ##FILTER=<ID=min_af_0.050000,Description="Minimum allele frequency 0.050000">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	17 ##FILTER=<ID=min_dp_5,Description="Minimum Coverage 5">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	18 ##FILTER=<ID=sb_fdr,Description="Strand-Bias Multiple Testing Correction: fdr corr. pvalue > 0.001000">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	19 ##SnpEffVersion="4.5covid19 (build 2020-04-15 22:26), by Pablo Cingolani"
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	20 ##SnpEffCmd="SnpEff -i vcf -o vcf -formatEff -classic -no-downstream -no-intergenic -no-upstream -stats /data/dnb03/galaxy_db/job_working_directory/012/246/12246328/outputs/galaxy_dataset_1054f879-0756-4754-86b9-66ab53b4f190.dat NC_045512.2 /data/dnb03/galaxy_db/files/9/8/a/dataset_98aa5c97-caf5-43bb-8d6e-033816a165dc.dat "
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	21 ##INFO=<ID=EFF,Number=.,Type=String,Description="Predicted effects for this variant.Format: 'Effect ( Effect_Impact \| Functional_Class \| Codon_Change \| Amino_Acid_Change\| Amino_Acid_length \| Gene_Name \| Transcript_BioType \| Gene_Coding \| Transcript_ID \| Exon_Rank \| Genotype [ \| ERRORS \| WARNINGS ] )' ">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	22 ##INFO=<ID=LOF,Number=.,Type=String,Description="Predicted loss of function effects for this variant. Format: 'Gene_Name \| Gene_ID \| Number_of_transcripts_in_gene \| Percent_of_transcripts_affected'">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	23 ##INFO=<ID=NMD,Number=.,Type=String,Description="Predicted nonsense mediated decay effects for this variant. Format: 'Gene_Name \| Gene_ID \| Number_of_transcripts_in_gene \| Percent_of_transcripts_affected'">
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	24 #CHROM POS ID REF ALT QUAL FILTER INFO
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	25 NC_045512.2 186 . C T 134.0 min_af_0.050000 AF=0.002111;DP=9950;DP4=7060,2864,14,8;SB=3
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	26 NC_045512.2 241 . C T 49314.0 PASS AF=0.991085;DP=4711;DP4=0,2,2421,2286;SB=6
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	27 NC_045512.2 295 . GA G 86.0 min_af_0.050000 AF=0.000776;DP=12892;DP4=2790,10130,3,7;HRUN=4;SB=3;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aca/\|T12\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aca/\|T12\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aca/\|T12\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aca/\|T12\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	28 NC_045512.2 320 . C T 130.0 min_af_0.050000 AF=0.001651;DP=12717;DP4=2676,10012,6,18;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cct/Tct\|P19S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cct/Tct\|P19S\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|T\|WARNING_TRANSCRIPT_NO_STOP_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cct/Tct\|P19S\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|T\|WARNING_TRANSCRIPT_NO_STOP_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cct/Tct\|P19S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	29 NC_045512.2 343 . G A 85.0 min_af_0.050000 AF=0.000997;DP=20063;DP4=9201,10833,11,13;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gtG/gtA\|V26\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|gtG/gtA\|V26\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|gtG/gtA\|V26\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|gtG/gtA\|V26\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	30 NC_045512.2 346 . C T 87.0 min_af_0.050000 AF=0.000947;DP=20061;DP4=9173,10861,6,14;SB=7;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ctC/ctT\|L27\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|ctC/ctT\|L27\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|T\|WARNING_TRANSCRIPT_NO_STOP_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ctC/ctT\|L27\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|T\|WARNING_TRANSCRIPT_NO_STOP_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ctC/ctT\|L27\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	31 NC_045512.2 384 . C T 113.0 min_af_0.050000 AF=0.001059;DP=19826;DP4=8681,11111,8,18;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCa/tTa\|S40L\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCa/tTa\|S40L\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|T\|WARNING_TRANSCRIPT_NO_STOP_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCa/tTa\|S40L\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|T\|WARNING_TRANSCRIPT_NO_STOP_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCa/tTa\|S40L\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	32 NC_045512.2 408 . A G 92.0 min_af_0.050000 AF=0.001520;DP=9869;DP4=7607,2236,8,7;SB=12;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gGt\|D48G\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gGt\|D48G\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gGt\|D48G\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gGt\|D48G\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	33 NC_045512.2 439 . A G 136.0 min_af_0.050000 AF=0.003018;DP=9942;DP4=7528,2377,22,11;SB=6;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|aaA/aaG\|K58\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),SYNONYMOUS_CODING(LOW\|SILENT\|aaA/aaG\|K58\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|aaA/aaG\|K58\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|aaA/aaG\|K58\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	34 NC_045512.2 443 . GT G 152.0 min_af_0.050000 AF=0.001419;DP=9867;DP4=7517,2353,10,4;HRUN=4;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttg/\|L61\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttg/\|L61\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttg/\|L61\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|G\|WARNING_TRANSCRIPT_NO_STOP_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttg/\|L61\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	35 NC_045512.2 645 . G A 139.0 min_af_0.050000 AF=0.001901;DP=9469;DP4=1920,7528,7,13;SB=8;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gAt\|G127D\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gAt\|G127D\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gAt\|G127D\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gAt\|G127D\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	36 NC_045512.2 685 . AAAGTCATTT A 483.0 min_af_0.050000 AF=0.003415;DP=9662;DP4=2267,7379,9,24;HRUN=3;SB=1;INDEL;EFF=CODON_DELETION(MODERATE\|\|aagtcattt/\|KSF141\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),CODON_DELETION(MODERATE\|\|aagtcattt/\|KSF141\|179\|ORF1ab\|protein_coding\|CODING\|YP_009725297.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON),CODON_DELETION(MODERATE\|\|aagtcattt/\|KSF141\|179\|ORF1ab\|protein_coding\|CODING\|YP_009742608.1\|1\|A\|WARNING_TRANSCRIPT_NO_STOP_CODON),CODON_DELETION(MODERATE\|\|aagtcattt/\|KSF141\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	37 NC_045512.2 1019 . C T 99.0 min_af_0.050000 AF=0.001342;DP=11174;DP4=9196,1955,12,3;SB=1;EFF=STOP_GAINED(HIGH\|NONSENSE\|Cag/Tag\|Q252\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),STOP_GAINED(HIGH\|NONSENSE\|Cag/Tag\|Q252\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),STOP_GAINED(HIGH\|NONSENSE\|Cag/Tag\|Q72\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),STOP_GAINED(HIGH\|NONSENSE\|Cag/Tag\|Q72\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON);LOF=(ORF1ab\|GU280_gp01\|28\|0.04);NMD=(ORF1ab\|GU280_gp01\|28\|0.04)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	38 NC_045512.2 1075 . T C 87.0 min_af_0.050000 AF=0.001237;DP=11322;DP4=9045,2250,18,3;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tgT/tgC\|C270\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tgT/tgC\|C270\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tgT/tgC\|C90\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tgT/tgC\|C90\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	39 NC_045512.2 1115 . A T 412.0 min_af_0.050000 AF=0.008698;DP=3449;DP4=1366,2051,2,29;SB=42;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I284F\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I284F\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I104F\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Att/Ttt\|I104F\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	40 NC_045512.2 1133 . A T 223.0 min_af_0.050000 AF=0.005443;DP=3491;DP4=1491,1981,17,2;SB=42;EFF=STOP_GAINED(HIGH\|NONSENSE\|Aag/Tag\|K290\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),STOP_GAINED(HIGH\|NONSENSE\|Aag/Tag\|K290\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),STOP_GAINED(HIGH\|NONSENSE\|Aag/Tag\|K110\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),STOP_GAINED(HIGH\|NONSENSE\|Aag/Tag\|K110\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON);LOF=(ORF1ab\|GU280_gp01\|28\|0.04);NMD=(ORF1ab\|GU280_gp01\|28\|0.04)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	41 NC_045512.2 1224 . T C 100.0 min_af_0.050000 AF=0.001457;DP=10296;DP4=1820,8452,7,12;SB=12;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cTc/cCc\|L320P\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cTc/cCc\|L320P\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cTc/cCc\|L140P\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cTc/cCc\|L140P\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	42 NC_045512.2 1304 . G T 221.0 min_af_0.050000 AF=0.002447;DP=10217;DP4=1929,8259,6,19;SB=3;EFF=STOP_GAINED(HIGH\|NONSENSE\|Gag/Tag\|E347\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),STOP_GAINED(HIGH\|NONSENSE\|Gag/Tag\|E347\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),STOP_GAINED(HIGH\|NONSENSE\|Gag/Tag\|E167\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),STOP_GAINED(HIGH\|NONSENSE\|Gag/Tag\|E167\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON);LOF=(ORF1ab\|GU280_gp01\|28\|0.04);NMD=(ORF1ab\|GU280_gp01\|28\|0.04)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	43 NC_045512.2 1644 . A C 80.0 min_af_0.050000 AF=0.001682;DP=7133;DP4=5888,1231,7,5;SB=13;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aCc\|N460T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aCc\|N460T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aCc\|N280T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAc/aCc\|N280T\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	44 NC_045512.2 1647 . T A 91.0 min_af_0.050000 AF=0.001680;DP=7142;DP4=5854,1271,8,5;SB=11;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTc/aAc\|I461N\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTc/aAc\|I461N\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTc/aAc\|I281N\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTc/aAc\|I281N\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	45 NC_045512.2 1656 . T A 90.0 min_af_0.050000 AF=0.001807;DP=7195;DP4=5827,1352,9,5;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTt/gAt\|V464D\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTt/gAt\|V464D\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTt/gAt\|V284D\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTt/gAt\|V284D\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	46 NC_045512.2 1695 . T G 82.0 min_af_0.050000 AF=0.002029;DP=7394;DP4=5871,1505,11,5;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTg/tGg\|L477W\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTg/tGg\|L477W\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTg/tGg\|L297W\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTg/tGg\|L297W\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	47 NC_045512.2 1702 . T C 195.0 min_af_0.050000 AF=0.003394;DP=7366;DP4=5832,1483,22,5;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S479\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S479\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S299\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S299\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	48 NC_045512.2 1914 . G A 150.0 min_af_0.050000 AF=0.002571;DP=6613;DP4=1088,5503,6,12;SB=9;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R550H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R550H\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R370H\|637\|ORF1ab\|protein_coding\|CODING\|YP_009725298.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R370H\|637\|ORF1ab\|protein_coding\|CODING\|YP_009742609.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	49 NC_045512.2 3037 . C T 19713.0 PASS AF=0.986891;DP=534;DP4=0,0,268,264;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F924\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F924\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F106\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ttC/ttT\|F106\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	50 NC_045512.2 3290 . C G 128.0 min_af_0.050000 AF=0.002266;DP=6620;DP4=5436,1163,11,4;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q1009E\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q1009E\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q191E\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q191E\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	51 NC_045512.2 4174 . TA T 142.0 min_af_0.050000 AF=0.001279;DP=11728;DP4=9312,2441,11,4;HRUN=5;SB=2;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aag/\|K1305\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aag/\|K1305\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aag/\|K487\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aag/\|K487\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	52 NC_045512.2 4185 . G T 162.0 min_af_0.050000 AF=0.002100;DP=11907;DP4=9344,2535,12,13;SB=31;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G1307V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G1307V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G489V\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G489V\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	53 NC_045512.2 4189 . C T 93.0 min_af_0.050000 AF=0.001263;DP=11879;DP4=9326,2523,16,3;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ggC/ggT\|G1308\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|ggC/ggT\|G1308\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|ggC/ggT\|G490\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ggC/ggT\|G490\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	54 NC_045512.2 4195 . T C 80.0 min_af_0.050000 AF=0.001184;DP=11824;DP4=9348,2459,12,3;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acT/acC\|T1310\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|acT/acC\|T1310\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|acT/acC\|T492\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|acT/acC\|T492\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	55 NC_045512.2 4308 . A G 82.0 min_af_0.050000 AF=0.001455;DP=12371;DP4=2527,9825,6,12;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K1348R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K1348R\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K530R\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K530R\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	56 NC_045512.2 4371 . G T 90.0 min_af_0.050000 AF=0.001210;DP=13227;DP4=3595,9586,3,17;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGa/gTa\|G1369V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGa/gTa\|G1369V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGa/gTa\|G551V\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGa/gTa\|G551V\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	57 NC_045512.2 5601 . T C 105.0 min_af_0.050000 AF=0.001463;DP=10254;DP4=6843,3393,12,4;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTt/tCt\|F1779S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTt/tCt\|F1779S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTt/tCt\|F961S\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTt/tCt\|F961S\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	58 NC_045512.2 5743 . G C 1464.0 min_af_0.050000;sb_fdr AF=0.026248;DP=3124;DP4=1517,1525,11,71;SB=109;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaG/gaC\|E1826D\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaG/gaC\|E1826D\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaG/gaC\|E1008D\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gaG/gaC\|E1008D\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	59 NC_045512.2 5744 . T C 1686.0 min_af_0.050000 AF=0.029789;DP=3122;DP4=1522,1505,19,75;SB=82;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y1827H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y1827H\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y1009H\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Cac\|Y1009H\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	60 NC_045512.2 5765 . G A 199.0 min_af_0.050000 AF=0.005792;DP=3108;DP4=1726,1363,6,12;SB=12;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G1834S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G1834S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G1016S\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G1016S\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	61 NC_045512.2 5766 . G C 86.0 min_af_0.050000 AF=0.003186;DP=3139;DP4=1768,1358,2,8;SB=16;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gCt\|G1834A\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gCt\|G1834A\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gCt\|G1016A\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gCt\|G1016A\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	62 NC_045512.2 5812 . C T 405.0 min_af_0.050000 AF=0.004460;DP=8745;DP4=1886,6812,12,30;SB=5;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D1849\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D1849\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D1031\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D1031\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	63 NC_045512.2 5818 . TTTAC T 239.0 min_af_0.050000 AF=0.002052;DP=8773;DP4=1938,6866,3,15;HRUN=3;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|cttaca/\|LT1853\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|cttaca/\|LT1853\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|cttaca/\|LT1035\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|cttaca/\|LT1035\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	64 NC_045512.2 6199 . T C 116.0 min_af_0.050000 AF=0.001229;DP=26862;DP4=19785,7035,23,11;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S1978\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S1978\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S1160\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S1160\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	65 NC_045512.2 6242 . C T 100.0 min_af_0.050000 AF=0.000795;DP=28921;DP4=20236,8653,20,6;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H1993Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H1993Y\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H1175Y\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H1175Y\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	66 NC_045512.2 6255 . C T 329.0 min_af_0.050000 AF=0.001751;DP=25699;DP4=20282,5363,36,11;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A1997V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A1997V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A1179V\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A1179V\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	67 NC_045512.2 6297 . G A 84.0 min_af_0.050000 AF=0.000761;DP=26296;DP4=19945,6320,17,6;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R2011H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R2011H\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R1193H\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R1193H\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	68 NC_045512.2 6312 . CA C 376.0 min_af_0.050000 AF=0.001389;DP=25918;DP4=19826,6183,28,8;HRUN=4;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaa/\|K2017\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K2017\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K1199\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K1199\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	69 NC_045512.2 6352 . G C 100.0 min_af_0.050000 AF=0.001539;DP=9749;DP4=4152,5577,7,8;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaG/aaC\|K2029N\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaG/aaC\|K2029N\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaG/aaC\|K1211N\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaG/aaC\|K1211N\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	70 NC_045512.2 6409 . T C 110.0 min_af_0.050000 AF=0.000930;DP=23646;DP4=4691,18919,4,20;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S2048\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S2048\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S1230\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S1230\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	71 NC_045512.2 6416 . G A 95.0 min_af_0.050000 AF=0.000855;DP=23400;DP4=4566,18808,3,19;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gta/Ata\|V2051I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gta/Ata\|V2051I\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gta/Ata\|V1233I\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gta/Ata\|V1233I\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	72 NC_045512.2 6503 . G A 133.0 min_af_0.050000 AF=0.001139;DP=20199;DP4=3118,17049,10,19;SB=20;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A2080T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A2080T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1262T\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A1262T\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	73 NC_045512.2 7021 . TTTA T 73.0 min_af_0.050000 AF=0.002296;DP=2178;DP4=398,1780,0,5;HRUN=4;SB=2;INDEL;EFF=CODON_DELETION(MODERATE\|\|tta/\|L2253\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),CODON_DELETION(MODERATE\|\|tta/\|L2253\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),CODON_DELETION(MODERATE\|\|tta/\|L1435\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),CODON_DELETION(MODERATE\|\|tta/\|L1435\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	74 NC_045512.2 7889 . GT G 353.0 min_af_0.050000 AF=0.005331;DP=4314;DP4=884,3413,6,17;HRUN=5;SB=3;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F2543\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F2543\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F1725\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F1725\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	75 NC_045512.2 7986 . A G 84.0 min_af_0.050000 AF=0.001676;DP=6563;DP4=2932,3615,5,8;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAg/cGg\|Q2574R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAg/cGg\|Q2574R\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAg/cGg\|Q1756R\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009725299.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAg/cGg\|Q1756R\|1944\|ORF1ab\|protein_coding\|CODING\|YP_009742610.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	76 NC_045512.2 8883 . T C 80.0 min_af_0.050000 AF=0.010616;DP=471;DP4=88,377,2,3;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTa/aCa\|I2873T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTa/aCa\|I2873T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTa/aCa\|I110T\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTa/aCa\|I110T\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	77 NC_045512.2 8916 . T C 128.0 min_af_0.050000 AF=0.003252;DP=3997;DP4=3121,863,11,2;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTc/tCc\|F2884S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTc/tCc\|F2884S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTc/tCc\|F121S\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTc/tCc\|F121S\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	78 NC_045512.2 8927 . GT G 108.0 min_af_0.050000 AF=0.002195;DP=4100;DP4=3161,931,6,3;HRUN=5;SB=3;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F2889\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F2889\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F126\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F126\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	79 NC_045512.2 9014 . G A 85.0 min_af_0.050000 AF=0.002464;DP=4058;DP4=3162,885,7,3;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A2917T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A2917T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A154T\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A154T\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	80 NC_045512.2 9016 . T C 93.0 min_af_0.050000 AF=0.002467;DP=4054;DP4=3162,882,8,2;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A2917\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A2917\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A154\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A154\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	81 NC_045512.2 9208 . T C 84.0 min_af_0.050000 AF=0.002427;DP=3708;DP4=685,3012,3,7;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S2981\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S2981\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S218\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tcT/tcC\|S218\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	82 NC_045512.2 9600 . T C 90.0 min_af_0.050000 AF=0.001700;DP=8237;DP4=6499,1722,10,4;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTg/tCg\|L3112S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTg/tCg\|L3112S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTg/tCg\|L349S\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTg/tCg\|L349S\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	83 NC_045512.2 10046 . GTTT G 72.0 min_af_0.050000 AF=0.006144;DP=651;DP4=152,496,1,3;HRUN=4;SB=0;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|gttttg/gtg\|VL3261V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G\|INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|gttttg/gtg\|VL3261V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G\|INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|gttttg/gtg\|VL498V\|499\|ORF1ab\|protein_coding\|CODING\|YP_009725300.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|gttttg/gtg\|VL498V\|499\|ORF1ab\|protein_coding\|CODING\|YP_009742611.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	84 NC_045512.2 10386 . CT C 99.0 min_af_0.050000 AF=0.002298;DP=3481;DP4=2009,1466,4,4;HRUN=5;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tca/\|S3376\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tca/\|S3376\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tca/\|S113\|305\|ORF1ab\|protein_coding\|CODING\|YP_009725301.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tca/\|S113\|305\|ORF1ab\|protein_coding\|CODING\|YP_009742612.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	85 NC_045512.2 11036 . CTTTTAG C 127.0 min_af_0.050000 AF=0.001090;DP=11931;DP4=10092,1826,12,1;HRUN=4;SB=1;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|gttttagtc/gtc\|VLV3593V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|gttttagtc/gtc\|VLV3593V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C\|INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|gttttagtc/gtc\|VLV24V\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|gttttagtc/gtc\|VLV24V\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	86 NC_045512.2 11067 . C T 159.0 min_af_0.050000 AF=0.001731;DP=12712;DP4=10344,2335,18,10;SB=15;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCt/tTt\|S3601F\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCt/tTt\|S3601F\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCt/tTt\|S32F\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCt/tTt\|S32F\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	87 NC_045512.2 11071 . G GTTC 49314.0 PASS AF=0.919205;DP=12736;DP4=800,227,9565,2142;HRUN=2;SB=24;INDEL;EFF=CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCTTt\|F3604FF\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|GTTC\|INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCTTt\|F3604FF\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|GTTC\|INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCTTt\|F35FF\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|GTTC\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCTTt\|F35FF\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|GTTC\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	88 NC_045512.2 11074 . C CTTCT 3762.0 min_af_0.050000 AF=0.026300;DP=13004;DP4=10107,2533,282,60;HRUN=8;SB=5;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/ttCTTTt\|F3604FF?\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|CTTCT\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/ttCTTTt\|F3604FF?\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|CTTCT\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/ttCTTTt\|F35FF?\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|CTTCT\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/ttCTTTt\|F35FF?\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|CTTCT\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	89 NC_045512.2 11075 . T TTC 7808.0 min_af_0.050000 AF=0.025871;DP=13026;DP4=10138,2548,273,64;HRUN=8;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/ttCTt\|F3604F?\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|TTC\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/ttCTt\|F3604F?\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|TTC\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/ttCTt\|F35F?\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|TTC\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/ttCTt\|F35F?\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|TTC\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	90 NC_045512.2 11075 . T TTCC 208.0 min_af_0.050000 AF=0.001382;DP=13026;DP4=10138,2548,15,3;HRUN=8;SB=0;INDEL;EFF=CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCCTt\|F3604FL\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|TTCC\|INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCCTt\|F3604FL\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|TTCC\|INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCCTt\|F35FL\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|TTCC\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCCTt\|F35FL\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|TTCC\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	91 NC_045512.2 11076 . T TCTC 120.0 min_af_0.050000 AF=0.000915;DP=13115;DP4=10415,2686,8,4;HRUN=8;SB=5;INDEL;EFF=CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCTCt\|F3604FS\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|TCTC),CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCTCt\|F3604FS\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|TCTC),CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCTCt\|F35FS\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|TCTC\|WARNING_TRANSCRIPT_NO_START_CODON),CODON_CHANGE_PLUS_CODON_INSERTION(MODERATE\|\|ttt/ttCTCt\|F35FS\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|TCTC\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	92 NC_045512.2 11077 . T C 217.0 min_af_0.050000 AF=0.008991;DP=13124;DP4=10364,2639,66,55;SB=90;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttT/ttC\|F3604\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ttT/ttC\|F3604\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ttT/ttC\|F35\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ttT/ttC\|F35\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	93 NC_045512.2 11083 . G T 86.0 min_af_0.050000 AF=0.003262;DP=13183;DP4=10380,2749,31,18;SB=19;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L3606F\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L3606F\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L37F\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|ttG/ttT\|L37F\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	94 NC_045512.2 11104 . T C 126.0 min_af_0.050000 AF=0.001408;DP=13493;DP4=10490,2969,16,6;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P3613\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P3613\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P44\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P44\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	95 NC_045512.2 11139 . C T 123.0 min_af_0.050000 AF=0.001387;DP=13695;DP4=10485,3180,15,11;SB=14;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A3625V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A3625V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A56V\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A56V\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	96 NC_045512.2 11442 . C T 1697.0 min_af_0.050000 AF=0.020029;DP=4893;DP4=3611,1179,71,28;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A3726V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A3726V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A157V\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A157V\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	97 NC_045512.2 11653 . CT C 106.0 min_af_0.050000 AF=0.001023;DP=10755;DP4=6029,4718,5,6;HRUN=4;SB=2;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tgt/\|C3798\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tgt/\|C3798\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tgt/\|C229\|289\|ORF1ab\|protein_coding\|CODING\|YP_009725302.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tgt/\|C229\|289\|ORF1ab\|protein_coding\|CODING\|YP_009742613.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	98 NC_045512.2 11851 . G A 153.0 min_af_0.050000 AF=0.002485;DP=6840;DP4=1562,5257,2,16;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|atG/atA\|M3862I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|atG/atA\|M3862I\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|atG/atA\|M3I\|82\|ORF1ab\|protein_coding\|CODING\|YP_009725303.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|atG/atA\|M3I\|82\|ORF1ab\|protein_coding\|CODING\|YP_009742614.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	99 NC_045512.2 11866 . C T 107.0 min_af_0.050000 AF=0.001932;DP=7247;DP4=1487,5740,4,12;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C3867\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C3867\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C8\|82\|ORF1ab\|protein_coding\|CODING\|YP_009725303.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tgC/tgT\|C8\|82\|ORF1ab\|protein_coding\|CODING\|YP_009742614.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	100 NC_045512.2 12129 . C T 81.0 min_af_0.050000 AF=0.001191;DP=10917;DP4=2183,8720,2,11;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A3955V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A3955V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A13V\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A13V\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	101 NC_045512.2 12132 . CTT C 80.0 min_af_0.050000 AF=0.000827;DP=10886;DP4=2133,8761,1,8;HRUN=4;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F3957\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F3957\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F15\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F15\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.14)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	102 NC_045512.2 12143 . G A 100.0 min_af_0.050000 AF=0.001349;DP=11858;DP4=3081,8755,3,15;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A3960T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A3960T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A18T\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A18T\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	103 NC_045512.2 12662 . G A 100.0 min_af_0.050000 AF=0.001730;DP=8093;DP4=1723,6352,3,11;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A4133T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A4133T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A191T\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A191T\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	104 NC_045512.2 12684 . A G 217.0 min_af_0.050000 AF=0.002858;DP=8048;DP4=1686,6335,8,18;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAg/cGg\|Q4140R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAg/cGg\|Q4140R\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION(MODERATE\|MISSENSE\|cAg/cGg\|Q198R\|197\|ORF1ab\|protein_coding\|CODING\|YP_009725304.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION(MODERATE\|MISSENSE\|cAg/cGg\|Q198R\|197\|ORF1ab\|protein_coding\|CODING\|YP_009742615.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	105 NC_045512.2 12769 . G A 80.0 min_af_0.050000 AF=0.001019;DP=18646;DP4=10427,8187,11,9;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcG/gcA\|A4168\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|gcG/gcA\|A4168\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|gcG/gcA\|A28\|112\|ORF1ab\|protein_coding\|CODING\|YP_009725305.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|gcG/gcA\|A28\|112\|ORF1ab\|protein_coding\|CODING\|YP_009742616.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	106 NC_045512.2 13034 . G A 131.0 min_af_0.050000 AF=0.000871;DP=32142;DP4=19137,12963,17,16;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4257T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4257T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	107 NC_045512.2 13035 . C T 140.0 min_af_0.050000 AF=0.000899;DP=32264;DP4=19148,13078,18,13;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A4257V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A4257V\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A4V\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A4V\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	108 NC_045512.2 13038 . C T 94.0 min_af_0.050000 AF=0.000712;DP=32326;DP4=19147,13141,13,12;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T4258I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T4258I\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T5I\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T5I\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	109 NC_045512.2 13048 . T C 93.0 min_af_0.050000 AF=0.000709;DP=32455;DP4=19069,13247,19,99;SB=209;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P4261\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P4261\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P8\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P8\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	110 NC_045512.2 13049 . G A 90.0 min_af_0.050000 AF=0.000707;DP=32554;DP4=19096,13425,19,7;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A4262T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A4262T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A9T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A9T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	111 NC_045512.2 13051 . C T 49314.0 PASS AF=0.968256;DP=32510;DP4=506,283,18579,13137;SB=27;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcC/gcT\|A4262\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|gcC/gcT\|A4262\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T),SYNONYMOUS_CODING(LOW\|SILENT\|gcC/gcT\|A9\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|gcC/gcT\|A9\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	112 NC_045512.2 13078 . T C 104.0 min_af_0.050000 AF=0.000897;DP=23404;DP4=18810,4560,17,5;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A4271\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A4271\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A18\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A18\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	113 NC_045512.2 13094 . G A 105.0 min_af_0.050000 AF=0.001062;DP=23533;DP4=18300,5201,17,9;SB=8;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A4277T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A4277T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A24T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A24T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	114 NC_045512.2 13123 . TG T 121.0 min_af_0.050000 AF=0.000734;DP=23172;DP4=17672,5522,15,2;HRUN=5;SB=4;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gga/\|G4288\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|gga/\|G4288\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|gga/\|G35\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|gga/\|G35\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.11)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	115 NC_045512.2 13129 . A G 245.0 min_af_0.050000 AF=0.001754;DP=23381;DP4=17726,5589,47,13;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G4288\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G4288\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G35\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ggA/ggG\|G35\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	116 NC_045512.2 13142 . AATT A 92.0 min_af_0.050000 AF=0.000522;DP=22996;DP4=17663,5362,11,1;HRUN=2;SB=4;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|aattgt/agt\|NC4293S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|aattgt/agt\|NC4293S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|aattgt/agt\|NC40S\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|aattgt/agt\|NC40S\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	117 NC_045512.2 13182 . A G 82.0 min_af_0.050000 AF=0.001402;DP=9270;DP4=4206,5046,7,9;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAg/cGg\|Q4306R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAg/cGg\|Q4306R\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAg/cGg\|Q53R\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAg/cGg\|Q53R\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	118 NC_045512.2 13235 . G A 121.0 min_af_0.050000 AF=0.001286;DP=21767;DP4=5218,16517,5,24;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4324T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4324T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A71T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A71T\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	119 NC_045512.2 13240 . G A 81.0 min_af_0.050000 AF=0.000912;DP=21941;DP4=5298,16616,7,15;SB=3;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tcG/tcA\|S4325\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|tcG/tcA\|S4325\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),SYNONYMOUS_CODING(LOW\|SILENT\|tcG/tcA\|S72\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|tcG/tcA\|S72\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	120 NC_045512.2 13267 . A G 88.0 min_af_0.050000 AF=0.000835;DP=22744;DP4=5283,17428,7,13;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|atA/atG\|I4334M\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|atA/atG\|I4334M\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|atA/atG\|I81M\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|atA/atG\|I81M\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	121 NC_045512.2 13288 . AT A 105.0 min_af_0.050000 AF=0.000617;DP=22682;DP4=5257,17413,2,12;HRUN=4;SB=2;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tgt/\|C4343\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tgt/\|C4343\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tgt/\|C90\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tgt/\|C90\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.11)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	122 NC_045512.2 13299 . TA T 84.0 min_af_0.050000 AF=0.000537;DP=22351;DP4=5178,17249,3,9;HRUN=4;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaa/\|K4346\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K4346\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K93\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K93\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.11)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	123 NC_045512.2 13345 . T C 90.0 min_af_0.050000 AF=0.000911;DP=25238;DP4=8015,17183,13,14;SB=10;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P4360\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P4360\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|C),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P107\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P107\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	124 NC_045512.2 13385 . G A 118.0 min_af_0.050000 AF=0.002796;DP=6437;DP4=5404,1009,16,3;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G4374S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G4374S\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G121S\|138\|ORF1ab\|protein_coding\|CODING\|YP_009725306.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G121S\|138\|ORF1ab\|protein_coding\|CODING\|YP_009742617.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	125 NC_045512.2 13451 . G A 128.0 min_af_0.050000 AF=0.002564;DP=5850;DP4=4711,1123,9,6;SB=12;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4396T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4396T\|4405\|ORF1ab\|protein_coding\|CODING\|GU280_gp01.2\|1\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4T\|12\|ORF1ab\|protein_coding\|CODING\|YP_009725312.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4T\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	126 NC_045512.2 13571 . G T 198.0 min_af_0.050000 AF=0.003149;DP=6351;DP4=1257,5071,5,15;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G4436V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G44V\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	127 NC_045512.2 13586 . TA T 78.0 min_af_0.050000 AF=0.001270;DP=6299;DP4=1240,5075,2,6;HRUN=5;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|act/\|T4443\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|act/\|T51\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	128 NC_045512.2 13726 . GTT G 148.0 min_af_0.050000 AF=0.000684;DP=24841;DP4=19872,5001,14,3;HRUN=2;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gtt/\|V4488\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G),FRAME_SHIFT(HIGH\|\|gtt/\|V96\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|G\|WARNING_TRANSCRIPT_NO_START_CODON);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	129 NC_045512.2 13860 . C T 87.0 min_af_0.050000 AF=0.000792;DP=25262;DP4=5217,20021,3,19;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D4532\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),SYNONYMOUS_CODING(LOW\|SILENT\|gaC/gaT\|D140\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	130 NC_045512.2 13924 . TG T 102.0 min_af_0.050000 AF=0.000538;DP=24171;DP4=4056,20138,6,7;HRUN=2;SB=18;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tgg/\|W4554\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tgg/\|W162\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	131 NC_045512.2 13966 . G A 112.0 min_af_0.050000 AF=0.001448;DP=13119;DP4=11254,1837,19,4;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A4568T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gcc/Acc\|A176T\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	132 NC_045512.2 13982 . G A 568.0 min_af_0.050000 AF=0.004640;DP=11637;DP4=9528,2049,31,23;SB=47;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R4573H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGt/cAt\|R181H\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	133 NC_045512.2 14000 . T C 109.0 min_af_0.050000 AF=0.001423;DP=11244;DP4=8939,2280,12,9;SB=16;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTa/tCa\|L4579S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTa/tCa\|L187S\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	134 NC_045512.2 14029 . C T 86.0 min_af_0.050000 AF=0.001223;DP=11445;DP4=8903,2521,14,3;SB=0;EFF=STOP_GAINED(HIGH\|NONSENSE\|Cga/Tga\|R4589\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),STOP_GAINED(HIGH\|NONSENSE\|Cga/Tga\|R197\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	135 NC_045512.2 14197 . G A 132.0 min_af_0.050000 AF=0.001690;DP=10653;DP4=2082,8545,5,15;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A4645T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A253T\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	136 NC_045512.2 14199 . A G 92.0 min_af_0.050000 AF=0.001321;DP=10596;DP4=2048,8528,3,14;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcA/gcG\|A4645\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G),SYNONYMOUS_CODING(LOW\|SILENT\|gcA/gcG\|A253\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	137 NC_045512.2 14408 . C T 38664.0 PASS AF=0.993204;DP=1030;DP4=0,0,481,548;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cTt\|P4715L\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cCt/cTt\|P323L\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	138 NC_045512.2 14615 . G A 104.0 min_af_0.050000 AF=0.001821;DP=8237;DP4=6659,1562,14,1;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R4784H\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGc/cAc\|R392H\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	139 NC_045512.2 14625 . CT C 77.0 min_af_0.050000 AF=0.000960;DP=8333;DP4=6724,1619,4,4;HRUN=4;SB=12;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tca/\|S4789\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tca/\|S397\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	140 NC_045512.2 14779 . A G 83.0 min_af_0.050000 AF=0.001441;DP=8325;DP4=1551,6758,1,12;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aat/Gat\|N4839D\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Aat/Gat\|N447D\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	141 NC_045512.2 14848 . CTATTTG C 146.0 min_af_0.050000 AF=0.001520;DP=7894;DP4=1373,6562,1,11;HRUN=1;SB=1;INDEL;EFF=CODON_DELETION(MODERATE\|\|tttgta/\|FV4863\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C\|INFO_REALIGN_3_PRIME),CODON_DELETION(MODERATE\|\|tttgta/\|FV471\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	142 NC_045512.2 14852 . TTG T 101.0 min_af_0.050000 AF=0.001143;DP=7873;DP4=1346,6528,2,7;HRUN=3;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gta/\|V4864\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|gta/\|V472\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	143 NC_045512.2 14877 . C T 99.0 min_af_0.050000 AF=0.001715;DP=7580;DP4=1121,6438,1,18;SB=4;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|taC/taT\|Y4871\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),SYNONYMOUS_CODING(LOW\|SILENT\|taC/taT\|Y479\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	144 NC_045512.2 15324 . C T 49314.0 PASS AF=0.987428;DP=4852;DP4=1,0,3671,1180;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N5020\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N628\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	145 NC_045512.2 15557 . C T 97.0 min_af_0.050000 AF=0.001120;DP=15182;DP4=12030,3125,16,4;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A5098V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A706V\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	146 NC_045512.2 15587 . C T 125.0 min_af_0.050000 AF=0.001359;DP=15452;DP4=11989,3428,16,8;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gTc\|A5108V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCc/gTc\|A716V\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	147 NC_045512.2 15599 . T C 133.0 min_af_0.050000 AF=0.001423;DP=15462;DP4=11902,3523,20,10;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTc/gCc\|V5112A\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTc/gCc\|V720A\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	148 NC_045512.2 15673 . T G 154.0 min_af_0.050000;sb_fdr AF=0.004353;DP=5743;DP4=2619,3096,22,3;SB=47;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttt/Gtt\|F5137V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttt/Gtt\|F745V\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	149 NC_045512.2 15682 . T A 2513.0 min_af_0.050000 AF=0.025192;DP=5716;DP4=2676,2893,80,66;SB=9;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tat/Aat\|Y5140N\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tat/Aat\|Y748N\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	150 NC_045512.2 15685 . T A 2366.0 min_af_0.050000 AF=0.024344;DP=5751;DP4=2707,2901,79,63;SB=10;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttg/Atg\|L5141M\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ttg/Atg\|L749M\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	151 NC_045512.2 15761 . G C 128.0 min_af_0.050000 AF=0.001343;DP=14896;DP4=3157,11712,5,15;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gCt\|G5166A\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gCt\|G774A\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	152 NC_045512.2 15784 . T TGAC 101.0 min_af_0.050000 AF=0.000738;DP=14904;DP4=3226,11771,4,7;HRUN=3;SB=5;INDEL;EFF=STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION(HIGH\|\|ttt/tGACtt\|F5174L\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|TGAC),STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION(HIGH\|\|ttt/tGACtt\|F782L\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|TGAC\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	153 NC_045512.2 15788 . AGTC A 102.0 min_af_0.050000 AF=0.000744;DP=14787;DP4=3096,11695,4,7;HRUN=1;SB=5;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|aagtca/aaa\|KS5175K\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|aagtca/aaa\|KS783K\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	154 NC_045512.2 15814 . GT G 83.0 min_af_0.050000 AF=0.000757;DP=14525;DP4=2939,11605,0,11;HRUN=5;SB=8;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttt/\|F5185\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|ttt/\|F793\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	155 NC_045512.2 15848 . CTG C 87.0 min_af_0.050000 AF=0.000656;DP=15239;DP4=2208,13051,3,7;HRUN=1;SB=7;INDEL;EFF=FRAME_SHIFT(HIGH\|\|actgac/\|TD5195\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C),FRAME_SHIFT(HIGH\|\|actgac/\|TD803\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|C\|WARNING_TRANSCRIPT_NO_START_CODON);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	156 NC_045512.2 15870 . T C 85.0 min_af_0.050000 AF=0.001034;DP=14505;DP4=12263,2225,11,4;SB=5;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|caT/caC\|H5202\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C),SYNONYMOUS_CODING(LOW\|SILENT\|caT/caC\|H810\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	157 NC_045512.2 15878 . G A 117.0 min_af_0.050000 AF=0.001285;DP=14781;DP4=12233,2469,71,2;SB=34;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C5205Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C813Y\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	158 NC_045512.2 15905 . A G 94.0 min_af_0.050000 AF=0.001148;DP=13939;DP4=10972,2946,14,4;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAg/cGg\|Q5214R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cAg/cGg\|Q822R\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	159 NC_045512.2 15961 . G A 87.0 min_af_0.050000 AF=0.001195;DP=14228;DP4=11028,3178,13,5;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggc/Agc\|G5233S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggc/Agc\|G841S\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	160 NC_045512.2 16072 . G T 109.0 min_af_0.050000 AF=0.001374;DP=13827;DP4=2871,10926,3,20;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Tct\|A5270S\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Tct\|A878S\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	161 NC_045512.2 16110 . G A 114.0 min_af_0.050000 AF=0.001321;DP=13630;DP4=2821,10780,7,13;SB=7;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|aaG/aaA\|K5282\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),SYNONYMOUS_CODING(LOW\|SILENT\|aaG/aaA\|K890\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	162 NC_045512.2 16127 . C T 89.0 min_af_0.050000 AF=0.001127;DP=13309;DP4=2569,10720,3,13;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T5288I\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCa/aTa\|T896I\|931\|ORF1ab\|protein_coding\|CODING\|YP_009725307.1\|2\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	163 NC_045512.2 16837 . GA G 159.0 min_af_0.050000 AF=0.002455;DP=5295;DP4=4078,1223,11,2;HRUN=5;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaa/\|K5526\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|aaa/\|K202\|600\|ORF1ab\|protein_coding\|CODING\|YP_009725308.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	164 NC_045512.2 17104 . C T 125.0 min_af_0.050000 AF=0.001531;DP=11760;DP4=6999,4735,10,11;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H5614Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H290Y\|600\|ORF1ab\|protein_coding\|CODING\|YP_009725308.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	165 NC_045512.2 17183 . C T 80.0 min_af_0.050000 AF=0.001379;DP=8701;DP4=6683,2003,8,4;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A5640V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A316V\|600\|ORF1ab\|protein_coding\|CODING\|YP_009725308.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	166 NC_045512.2 17339 . C T 84.0 min_af_0.050000 AF=0.001407;DP=9239;DP4=2216,7005,2,11;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A5692V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A368V\|600\|ORF1ab\|protein_coding\|CODING\|YP_009725308.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	167 NC_045512.2 18669 . T C 84.0 min_af_0.050000 AF=0.001497;DP=8014;DP4=6457,1536,13,0;SB=8;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tgT/tgC\|C6135\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C),SYNONYMOUS_CODING(LOW\|SILENT\|tgT/tgC\|C210\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	168 NC_045512.2 18687 . CT C 119.0 min_af_0.050000 AF=0.001340;DP=8210;DP4=6530,1683,10,1;HRUN=4;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tcc/\|S6143\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|tcc/\|S218\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	169 NC_045512.2 18715 . T C 91.0 min_af_0.050000 AF=0.001573;DP=8263;DP4=6484,1760,12,3;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgt/Cgt\|C6151R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgt/Cgt\|C226R\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	170 NC_045512.2 18718 . T C 93.0 min_af_0.050000 AF=0.001566;DP=8302;DP4=6496,1793,10,3;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgg/Cgg\|W6152R\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgg/Cgg\|W227R\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	171 NC_045512.2 18932 . T C 80.0 min_af_0.050000 AF=0.000882;DP=18140;DP4=10385,7693,13,45;SB=71;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTa/aCa\|I6223T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTa/aCa\|I298T\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	172 NC_045512.2 18998 . C T 102.0 min_af_0.050000 AF=0.001323;DP=12090;DP4=9600,2461,16,4;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A6245V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A320V\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	173 NC_045512.2 19029 . C T 81.0 min_af_0.050000 AF=0.001222;DP=12278;DP4=9707,2551,16,1;SB=6;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|caC/caT\|H6255\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),SYNONYMOUS_CODING(LOW\|SILENT\|caC/caT\|H330\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	174 NC_045512.2 19199 . G A 82.0 min_af_0.050000 AF=0.001118;DP=12520;DP4=2574,9929,3,13;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C6312Y\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C387Y\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	175 NC_045512.2 19219 . G A 85.0 min_af_0.050000 AF=0.001153;DP=12139;DP4=2262,9858,5,13;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A6319T\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A394T\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	176 NC_045512.2 19611 . A G 103.0 min_af_0.050000 AF=0.001440;DP=11113;DP4=8992,2101,12,5;SB=4;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acA/acG\|T6449\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G),SYNONYMOUS_CODING(LOW\|SILENT\|acA/acG\|T524\|526\|ORF1ab\|protein_coding\|CODING\|YP_009725309.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	177 NC_045512.2 19679 . G T 113.0 min_af_0.050000 AF=0.001523;DP=11821;DP4=9213,2586,16,2;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G6472V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGt/gTt\|G20V\|345\|ORF1ab\|protein_coding\|CODING\|YP_009725310.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	178 NC_045512.2 19801 . C T 88.0 min_af_0.050000 AF=0.001376;DP=10904;DP4=2116,8770,3,13;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cgc/Tgc\|R6513C\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cgc/Tgc\|R61C\|345\|ORF1ab\|protein_coding\|CODING\|YP_009725310.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	179 NC_045512.2 19814 . CAG C 239.0 min_af_0.050000 AF=0.001755;DP=10824;DP4=2128,8719,4,15;HRUN=1;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ccagta/\|PV6517\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|C),FRAME_SHIFT(HIGH\|\|ccagta/\|PV65\|345\|ORF1ab\|protein_coding\|CODING\|YP_009725310.1\|1\|C\|WARNING_TRANSCRIPT_NO_START_CODON);LOF=(ORF1ab\|GU280_gp01\|28\|0.07)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	180 NC_045512.2 19870 . G A 153.0 min_af_0.050000 AF=0.001802;DP=11100;DP4=2451,8624,3,19;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtg/Atg\|V6536M\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtg/Atg\|V84M\|345\|ORF1ab\|protein_coding\|CODING\|YP_009725310.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	181 NC_045512.2 19970 . C T 98.0 min_af_0.050000 AF=0.007973;DP=878;DP4=657,214,4,3;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A6569V\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A117V\|345\|ORF1ab\|protein_coding\|CODING\|YP_009725310.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	182 NC_045512.2 20937 . G A 108.0 min_af_0.050000 AF=0.001625;DP=10463;DP4=8160,2282,17,3;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|acG/acA\|T6891\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|A),SYNONYMOUS_CODING(LOW\|SILENT\|acG/acA\|T93\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|A\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	183 NC_045512.2 21054 . C T 124.0 min_af_0.050000 AF=0.001835;DP=9808;DP4=1973,7804,4,16;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|taC/taT\|Y6930\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|T),SYNONYMOUS_CODING(LOW\|SILENT\|taC/taT\|Y132\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|T\|WARNING_TRANSCRIPT_NO_START_CODON)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	184 NC_045512.2 21073 . GT G 66.0 min_af_0.050000 AF=0.000733;DP=9549;DP4=1843,7727,2,5;HRUN=2;SB=2;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gtt/\|V6937\|7096\|ORF1ab\|protein_coding\|CODING\|GU280_gp01\|2\|G\|INFO_REALIGN_3_PRIME),FRAME_SHIFT(HIGH\|\|gtt/\|V139\|297\|ORF1ab\|protein_coding\|CODING\|YP_009725311.1\|1\|G\|WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME);LOF=(ORF1ab\|GU280_gp01\|28\|0.04)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	185 NC_045512.2 22218 . GT G 147.0 min_af_0.050000 AF=0.004186;DP=2389;DP4=435,1949,2,8;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tcg/\|S221\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(S\|GU280_gp02\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	186 NC_045512.2 22643 . T A 801.0 min_af_0.050000 AF=0.005735;DP=11508;DP4=9198,2236,51,17;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgt/Agt\|C361S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	187 NC_045512.2 22644 . G C 746.0 min_af_0.050000 AF=0.005540;DP=11553;DP4=9197,2280,47,17;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGt/tCt\|C361S\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	188 NC_045512.2 22645 . T A 749.0 min_af_0.050000 AF=0.005544;DP=11543;DP4=9171,2285,52,16;SB=3;EFF=STOP_GAINED(HIGH\|NONSENSE\|tgT/tgA\|C361*\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	189 NC_045512.2 22859 . G C 117.0 min_af_0.050000 AF=0.001528;DP=11125;DP4=2468,8618,7,12;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtt/Ctt\|V433L\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	190 NC_045512.2 23132 . GT G 179.0 min_af_0.050000 AF=0.003890;DP=2828;DP4=462,2364,0,11;HRUN=3;SB=6;INDEL;EFF=FRAME_SHIFT(HIGH\|\|tgt/\|C525\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(S\|GU280_gp02\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	191 NC_045512.2 23163 . T C 117.0 min_af_0.050000 AF=0.001396;DP=12895;DP4=9870,2998,17,4;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTt/gCt\|V534A\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	192 NC_045512.2 23272 . T C 154.0 min_af_0.050000 AF=0.001679;DP=13105;DP4=9931,3147,18,6;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A570\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	193 NC_045512.2 23403 . A G 49314.0 PASS AF=0.990102;DP=12730;DP4=3,3,2828,9889;SB=8;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gGt\|D614G\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	194 NC_045512.2 23438 . G A 93.0 min_af_0.050000 AF=0.001224;DP=12256;DP4=2589,9647,4,12;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A626T\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	195 NC_045512.2 23439 . C T 145.0 min_af_0.050000 AF=0.001639;DP=12203;DP4=2550,9627,7,15;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A626V\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	196 NC_045512.2 23781 . T C 92.0 min_af_0.050000 AF=0.003842;DP=2082;DP4=391,1681,2,7;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTg/aCg\|M740T\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	197 NC_045512.2 24729 . C T 143.0 min_af_0.050000 AF=0.001381;DP=15926;DP4=13029,2871,17,7;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A1056V\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	198 NC_045512.2 24780 . A G 180.0 min_af_0.050000 AF=0.001600;DP=16878;DP4=13508,3337,21,7;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAg/aGg\|K1073R\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	199 NC_045512.2 24794 . G A 88.0 min_af_0.050000 AF=0.000996;DP=17063;DP4=13392,3645,14,4;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A1078T\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	200 NC_045512.2 24799 . T C 199.0 min_af_0.050000 AF=0.001639;DP=17083;DP4=13407,3641,25,8;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P1079\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	201 NC_045512.2 24942 . A T 607.0 min_af_0.050000 AF=0.003550;DP=16901;DP4=3607,13223,3,62;SB=34;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAt/gTt\|D1127V\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	202 NC_045512.2 24952 . AGGAATT A 84.0 min_af_0.050000 AF=0.000594;DP=16836;DP4=3631,13204,1,9;HRUN=2;SB=1;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|ggaattgtc/gtc\|GIV1131V\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	203 NC_045512.2 24972 . T C 153.0 min_af_0.050000 AF=0.001433;DP=16743;DP4=3598,13107,6,22;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTt/gCt\|V1137A\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	204 NC_045512.2 24986 . C T 112.0 min_af_0.050000 AF=0.001156;DP=16431;DP4=3383,13022,5,14;SB=2;EFF=STOP_GAINED(HIGH\|NONSENSE\|Caa/Taa\|Q1142*\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	205 NC_045512.2 25320 . G A 85.0 min_af_0.050000 AF=0.001360;DP=9562;DP4=7908,1633,14,1;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGc/tAc\|C1253Y\|1273\|S\|protein_coding\|CODING\|GU280_gp02\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	206 NC_045512.2 25543 . G A 139.0 min_af_0.050000 AF=0.001802;DP=10546;DP4=2037,8488,5,14;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A51T\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	207 NC_045512.2 25587 . CA C 124.0 min_af_0.050000 AF=0.001269;DP=10247;DP4=1857,8407,2,11;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aag/\|K67\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|C\|INFO_REALIGN_3_PRIME);LOF=(ORF3a\|GU280_gp03\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	208 NC_045512.2 25618 . G A 83.0 min_af_0.050000 AF=0.001432;DP=9779;DP4=1482,8279,5,12;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggt/Agt\|G76S\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	209 NC_045512.2 25936 . C T 174.0 min_af_0.050000 AF=0.002066;DP=10167;DP4=8332,1810,19,3;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cat/Tat\|H182Y\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	210 NC_045512.2 25982 . TA T 80.0 min_af_0.050000 AF=0.000829;DP=10857;DP4=8636,2216,7,2;HRUN=4;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaa/\|K198\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T\|INFO_REALIGN_3_PRIME);LOF=(ORF3a\|GU280_gp03\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	211 NC_045512.2 26042 . C T 1909.0 min_af_0.050000 AF=0.011118;DP=11693;DP4=8824,2733,98,34;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T217I\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	212 NC_045512.2 26044 . C G 1780.0 min_af_0.050000 AF=0.010469;DP=11653;DP4=8800,2722,94,32;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Caa/Gaa\|Q218E\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	213 NC_045512.2 26046 . A G 1835.0 min_af_0.050000 AF=0.010734;DP=11738;DP4=8835,2772,96,33;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|caA/caG\|Q218\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	214 NC_045512.2 26057 . A C 80.0 min_af_0.050000 AF=0.002228;DP=6734;DP4=3992,2718,9,9;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAc/gCc\|D222A\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	215 NC_045512.2 26089 . T A 108.0 min_af_0.050000 AF=0.002580;DP=4652;DP4=2165,2473,2,11;SB=15;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tac/Aac\|Y233N\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	216 NC_045512.2 26103 . T A 659.0 min_af_0.050000;sb_fdr AF=0.009765;DP=4813;DP4=2371,2394,43,4;SB=86;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gtT/gtA\|V237\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	217 NC_045512.2 26141 . A T 87.0 min_af_0.050000 AF=0.002355;DP=4670;DP4=2711,1943,2,9;SB=19;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gAc/gTc\|D250V\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	218 NC_045512.2 26209 . G A 178.0 min_af_0.050000 AF=0.001966;DP=11696;DP4=2612,9054,8,18;SB=4;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gtg/Atg\|V273M\|275\|ORF3a\|protein_coding\|CODING\|GU280_gp03\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	219 NC_045512.2 26542 . C A 184.0 min_af_0.050000 AF=0.006467;DP=2165;DP4=107,2043,0,14;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aAt\|T7N\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	220 NC_045512.2 26545 . T G 296.0 min_af_0.050000 AF=0.002439;DP=15173;DP4=13033,2102,24,13;SB=30;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aTt/aGt\|I8S\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	221 NC_045512.2 26561 . TA T 220.0 min_af_0.050000 AF=0.001461;DP=15742;DP4=13196,2525,18,5;HRUN=5;SB=3;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aag/\|K15\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T\|INFO_REALIGN_3_PRIME);LOF=(M\|GU280_gp05\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	222 NC_045512.2 26774 . GGCTTGTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCTTCTTTCAGACTGTT G 96.0 min_af_0.050000 AF=0.000650;DP=16926;DP4=3341,13613,1,10;HRUN=2;SB=1;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gcttgtcttgtaggcttgatgtggctcagctacttcattgcttctttcagactgttt/\|ACLVGLMWLSYFIASFRLF85\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G);LOF=(M\|GU280_gp05\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	223 NC_045512.2 26775 . GCTTGT G 95.0 min_af_0.050000 AF=0.000653;DP=16845;DP4=3334,13588,2,9;HRUN=1;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|cttgta/\|LV87\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(M\|GU280_gp05\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	224 NC_045512.2 26775 . GCTTGTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCTT G 134.0 min_af_0.050000 AF=0.000831;DP=16845;DP4=3334,13588,1,13;HRUN=1;SB=4;INDEL;EFF=CODON_CHANGE_PLUS_CODON_DELETION(MODERATE\|\|tgtcttgtaggcttgatgtggctcagctacttcattgcttctttc/ttc\|CLVGLMWLSYFIASF86F\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	225 NC_045512.2 26779 . GTCTTGTAGGCTTGATGTGGCTCAGCTACTTCATTGCT G 121.0 min_af_0.050000 AF=0.000769;DP=16910;DP4=3320,13623,0,13;HRUN=1;SB=10;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gtaggcttgatgtggctcagctacttcattgcttctttc/\|VGLMWLSYFIASF88\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(M\|GU280_gp05\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	226 NC_045512.2 26786 . AGGCTTGATGTGGCTCAGCTACTTCATTGCTTCTT A 161.0 min_af_0.050000 AF=0.000947;DP=16887;DP4=3297,13606,1,15;HRUN=2;SB=4;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ggcttgatgtggctcagctacttcattgcttctttc/\|GLMWLSYFIASF89\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A);LOF=(M\|GU280_gp05\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	227 NC_045512.2 26788 . G A 136.0 min_af_0.050000 AF=0.001295;DP=16992;DP4=3364,13533,3,20;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gGc/gAc\|G89D\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	228 NC_045512.2 26814 . G A 83.0 min_af_0.050000 AF=0.000954;DP=16775;DP4=3241,13438,2,16;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gct/Act\|A98T\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	229 NC_045512.2 26847 . A G 80.0 min_af_0.050000 AF=0.001002;DP=16958;DP4=2751,14184,4,15;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Atg/Gtg\|M109V\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	230 NC_045512.2 26873 . C T 238.0 min_af_0.050000 AF=0.001445;DP=24907;DP4=10532,14329,20,17;SB=7;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|aaC/aaT\|N117\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	231 NC_045512.2 26889 . C T 169.0 min_af_0.050000 AF=0.001294;DP=24736;DP4=10265,14432,18,17;SB=5;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Cca/Tca\|P123S\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	232 NC_045512.2 27093 . T C 87.0 min_af_0.050000 AF=0.001158;DP=12956;DP4=3003,9931,3,12;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tca/Cca\|S191P\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	233 NC_045512.2 27103 . C T 84.0 min_af_0.050000 AF=0.001153;DP=13015;DP4=3020,9979,4,11;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCt/gTt\|A194V\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	234 NC_045512.2 27105 . G A 184.0 min_af_0.050000 AF=0.001854;DP=12942;DP4=3010,9897,7,19;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A195T\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	235 NC_045512.2 27133 . ATAAATT A 82.0 min_af_0.050000 AF=0.000704;DP=12790;DP4=2878,9896,2,7;HRUN=1;SB=0;INDEL;EFF=STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION(HIGH\|\|tataaatta/taa\|YKL204*\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	236 NC_045512.2 27133 . ATAAAT A 122.0 min_af_0.050000 AF=0.000938;DP=12790;DP4=2878,9896,2,10;HRUN=1;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ttaaac/\|LN206\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A\|INFO_REALIGN_3_PRIME);LOF=(M\|GU280_gp05\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	237 NC_045512.2 27190 . AAGTGACAACAGATGTTTCATCTCGTTGACTT A 84.0 min_af_0.050000 AF=0.000862;DP=12759;DP4=10963,11010,10,1;HRUN=2;SB=22;INDEL;EFF=GENE_FUSION(HIGH\|\|\|\|\|M+ORF6\|\|CODING\|\|\|A),FRAME_SHIFT+STOP_LOST+SPLICE_SITE_REGION(HIGH\|\|taa/\|*223\|222\|M\|protein_coding\|CODING\|GU280_gp05\|1\|A),FRAME_SHIFT+START_LOST(HIGH\|\|atgtttcatctcgttgacttt/\|MFHLVDF1\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|A);LOF=(ORF6\|GU280_gp06\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	238 NC_045512.2 27282 . G A 92.0 min_af_0.050000 AF=0.001215;DP=12350;DP4=9873,2456,13,6;SB=6;EFF=STOP_GAINED(HIGH\|NONSENSE\|tgG/tgA\|W27*\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	239 NC_045512.2 27285 . T A 188.0 min_af_0.050000 AF=0.001946;DP=12333;DP4=9873,2431,23,1;SB=11;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaT/aaA\|N28K\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	240 NC_045512.2 27335 . C T 427.0 min_af_0.050000 AF=0.007644;DP=4317;DP4=2285,1996,22,12;SB=6;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCt/aTt\|T45I\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	241 NC_045512.2 27344 . A T 816.0 min_af_0.050000 AF=0.012494;DP=4322;DP4=2322,1944,35,19;SB=8;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aAa/aTa\|K48I\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	242 NC_045512.2 27345 . A T 813.0 min_af_0.050000 AF=0.012500;DP=4320;DP4=2323,1943,35,19;SB=8;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aaA/aaT\|K48N\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	243 NC_045512.2 27354 . A G 859.0 min_af_0.050000 AF=0.013456;DP=4236;DP4=2370,1805,45,14;SB=24;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|caA/caG\|Q51\|61\|ORF6\|protein_coding\|CODING\|GU280_gp06\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	244 NC_045512.2 27416 . C T 90.0 min_af_0.050000 AF=0.001178;DP=12734;DP4=2572,10143,2,13;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A8V\|121\|ORF7a\|protein_coding\|CODING\|GU280_gp07\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	245 NC_045512.2 27437 . G A 143.0 min_af_0.050000 AF=0.001595;DP=12541;DP4=2423,10091,2,19;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tGt/tAt\|C15Y\|121\|ORF7a\|protein_coding\|CODING\|GU280_gp07\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	246 NC_045512.2 27496 . T C 98.0 min_af_0.050000 AF=0.001317;DP=11388;DP4=1594,9778,3,12;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Tgc/Cgc\|C35R\|121\|ORF7a\|protein_coding\|CODING\|GU280_gp07\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	247 NC_045512.2 28138 . C T 99.0 min_af_0.050000 AF=0.001215;DP=13167;DP4=11097,2039,13,5;SB=7;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tCc/tTc\|S82F\|121\|ORF8\|protein_coding\|CODING\|GU280_gp09\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	248 NC_045512.2 28148 . T C 83.0 min_af_0.050000 AF=0.001078;DP=12985;DP4=11170,1792,13,1;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ccT/ccC\|P85\|121\|ORF8\|protein_coding\|CODING\|GU280_gp09\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	249 NC_045512.2 28342 . A G 112.0 min_af_0.050000 AF=0.001261;DP=14272;DP4=2718,11531,4,15;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|tcA/tcG\|S23\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	250 NC_045512.2 28378 . G A 103.0 min_af_0.050000 AF=0.001371;DP=13857;DP4=2379,11440,1,18;SB=6;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcG/gcA\|A35\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	251 NC_045512.2 28378 . G C 86.0 min_af_0.050000 AF=0.001227;DP=13857;DP4=2379,11440,5,12;SB=7;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcG/gcC\|A35\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	252 NC_045512.2 28380 . G A 241.0 min_af_0.050000 AF=0.002170;DP=13827;DP4=2341,11452,10,21;SB=15;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGa/cAa\|R36Q\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	253 NC_045512.2 28383 . CA C 82.0 min_af_0.050000 AF=0.000728;DP=13736;DP4=2329,11456,1,9;HRUN=4;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|aaa/\|K38\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C\|INFO_REALIGN_3_PRIME);LOF=(N\|GU280_gp10\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	254 NC_045512.2 28774 . G A 80.0 min_af_0.050000 AF=0.001870;DP=5348;DP4=4300,1036,9,1;SB=1;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ttG/ttA\|L167\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	255 NC_045512.2 28953 . T C 88.0 min_af_0.050000 AF=0.002090;DP=5264;DP4=1078,4174,3,8;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|tTg/tCg\|L227S\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	256 NC_045512.2 28987 . CCAA C 391.0 min_af_0.050000 AF=0.004456;DP=5611;DP4=983,4617,8,17;HRUN=2;SB=11;INDEL;EFF=CODON_DELETION(MODERATE\|\|caa/\|Q242\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C\|INFO_REALIGN_3_PRIME)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	257 NC_045512.2 29029 . T C 858.0 min_af_0.050000 AF=0.004277;DP=18704;DP4=12752,5860,51,36;SB=13;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcT/gcC\|A252\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	258 NC_045512.2 29039 . A T 1871.0 min_af_0.050000 AF=0.007569;DP=19026;DP4=12781,6088,89,57;SB=10;EFF=STOP_GAINED(HIGH\|NONSENSE\|Aag/Tag\|K256*\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	259 NC_045512.2 29049 . G A 326.0 min_af_0.050000 AF=0.002664;DP=15392;DP4=12862,2473,41,5;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|cGg/cAg\|R259Q\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	260 NC_045512.2 29081 . GTA G 75.0 min_af_0.050000 AF=0.000573;DP=15701;DP4=12808,2895,8,1;HRUN=1;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|gta/\|V270\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|G);LOF=(N\|GU280_gp10\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	261 NC_045512.2 29098 . C T 97.0 min_af_0.050000 AF=0.001203;DP=15799;DP4=12816,2957,16,3;SB=0;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|ggC/ggT\|G275\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	262 NC_045512.2 29132 . G A 85.0 min_af_0.050000 AF=0.001063;DP=15987;DP4=12972,2987,17,5;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Ggg/Agg\|G287R\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	263 NC_045512.2 29187 . C T 143.0 min_af_0.050000 AF=0.002863;DP=5589;DP4=3055,2517,10,6;SB=2;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gCa/gTa\|A305V\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	264 NC_045512.2 29188 . A G 96.0 min_af_0.050000 AF=0.002168;DP=5536;DP4=3042,2470,8,9;SB=2;EFF=SYNONYMOUS_CODING(LOW\|SILENT\|gcA/gcG\|A305\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|G)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	265 NC_045512.2 29195 . GC G 173.0 min_af_0.050000 AF=0.002574;DP=5439;DP4=3065,2377,8,6;HRUN=5;SB=0;INDEL;EFF=FRAME_SHIFT(HIGH\|\|ccc/\|P309\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|G\|INFO_REALIGN_3_PRIME);LOF=(N\|GU280_gp10\|1\|1.00)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	266 NC_045512.2 29259 . C T 80.0 min_af_0.050000 AF=0.001072;DP=15862;DP4=2960,12882,4,14;SB=1;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|aCg/aTg\|T329M\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|T)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	267 NC_045512.2 29322 . T C 86.0 min_af_0.050000 AF=0.001005;DP=15925;DP4=3242,12646,5,18;SB=0;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|gTc/gCc\|V350A\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|C)
1062d6ad6503 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snpfreqplot/ commit 1f35303af979c16d9a3126dbc882a59f686ace5d" iuc parents: diff changeset	268 NC_045512.2 29348 . G A 112.0 min_af_0.050000 AF=0.001238;DP=15350;DP4=2783,12536,2,21;SB=3;EFF=NON_SYNONYMOUS_CODING(MODERATE\|MISSENSE\|Gca/Aca\|A359T\|419\|N\|protein_coding\|CODING\|GU280_gp10\|1\|A)

Mercurial > repos > iuc > snpfreqplot

annotate test-data/1085080.vcf @ 3:3d0adeee3f2b draft default tip