Mercurial > repos > iuc > snpsift

diff test-data/extFields_test3_out.vcf @ 5:09d6806c609e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
author iuc
date Wed, 18 Apr 2018 07:28:51 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/extFields_test3_out.vcf	Wed Apr 18 07:28:51 2018 -0400
@@ -0,0 +1,129 @@
+CHROM	POS	ID	REF	ALT	FILTER	ANN[*].EFFECT
+U00096	1518079		T	G		synonymous_variant
+U00096	1518079		T	G		upstream_gene_variant
+U00096	1518079		T	G		upstream_gene_variant
+U00096	1518079		T	G		upstream_gene_variant
+U00096	1518079		T	G		upstream_gene_variant
+U00096	1518079		T	G		upstream_gene_variant
+U00096	1518079		T	G		downstream_gene_variant
+U00096	1518079		T	G		downstream_gene_variant
+U00096	1518079		T	G		downstream_gene_variant
+U00096	1518079		T	G		downstream_gene_variant
+U00096	1518079		T	G		downstream_gene_variant
+U00096	1518079		T	G		downstream_gene_variant
+U00096	1518212		T	A		upstream_gene_variant
+U00096	1518212		T	A		upstream_gene_variant
+U00096	1518212		T	A		upstream_gene_variant
+U00096	1518212		T	A		upstream_gene_variant
+U00096	1518212		T	A		upstream_gene_variant
+U00096	1518212		T	A		downstream_gene_variant
+U00096	1518212		T	A		downstream_gene_variant
+U00096	1518212		T	A		downstream_gene_variant
+U00096	1518212		T	A		downstream_gene_variant
+U00096	1518212		T	A		downstream_gene_variant
+U00096	1518212		T	A		downstream_gene_variant
+U00096	1518212		T	A		downstream_gene_variant
+U00096	1518212		T	A		intergenic_region
+U00096	1523784		G	A		missense_variant
+U00096	1523784		G	A		upstream_gene_variant
+U00096	1523784		G	A		upstream_gene_variant
+U00096	1523784		G	A		upstream_gene_variant
+U00096	1523784		G	A		upstream_gene_variant
+U00096	1523784		G	A		upstream_gene_variant
+U00096	1523784		G	A		upstream_gene_variant
+U00096	1523784		G	A		downstream_gene_variant
+U00096	1523784		G	A		downstream_gene_variant
+U00096	1524994		CTTT	CT		frameshift_variant
+U00096	1524994		CTTT	CT		upstream_gene_variant
+U00096	1524994		CTTT	CT		upstream_gene_variant
+U00096	1524994		CTTT	CT		upstream_gene_variant
+U00096	1524994		CTTT	CT		upstream_gene_variant
+U00096	1524994		CTTT	CT		upstream_gene_variant
+U00096	1524994		CTTT	CT		upstream_gene_variant
+U00096	1524994		CTTT	CT		downstream_gene_variant
+U00096	1524994		CTTT	CT		downstream_gene_variant
+U00096	1525214		T	A		upstream_gene_variant
+U00096	1525214		T	A		upstream_gene_variant
+U00096	1525214		T	A		upstream_gene_variant
+U00096	1525214		T	A		upstream_gene_variant
+U00096	1525214		T	A		upstream_gene_variant
+U00096	1525214		T	A		upstream_gene_variant
+U00096	1525214		T	A		downstream_gene_variant
+U00096	1525214		T	A		downstream_gene_variant
+U00096	1525214		T	A		downstream_gene_variant
+U00096	1525214		T	A		intergenic_region
+U00096	1525377		AGG	AGGG,AGT		upstream_gene_variant
+U00096	1525377		AGG	AGGG,AGT		upstream_gene_variant
+U00096	1525377		AGG	AGGG,AGT		upstream_gene_variant
+U00096	1525377		AGG	AGGG,AGT		upstream_gene_variant
+U00096	1525377		AGG	AGGG,AGT		upstream_gene_variant
+U00096	1525377		AGG	AGGG,AGT		upstream_gene_variant
+U00096	1525377		AGG	AGGG,AGT		upstream_gene_variant
+U00096	1525377		AGG	AGGG,AGT		upstream_gene_variant
+U00096	1525377		AGG	AGGG,AGT		upstream_gene_variant
+U00096	1525377		AGG	AGGG,AGT		upstream_gene_variant
+U00096	1525377		AGG	AGGG,AGT		upstream_gene_variant
+U00096	1525377		AGG	AGGG,AGT		upstream_gene_variant
+U00096	1525377		AGG	AGGG,AGT		downstream_gene_variant
+U00096	1525377		AGG	AGGG,AGT		downstream_gene_variant
+U00096	1525377		AGG	AGGG,AGT		downstream_gene_variant
+U00096	1525377		AGG	AGGG,AGT		downstream_gene_variant
+U00096	1525377		AGG	AGGG,AGT		downstream_gene_variant
+U00096	1525377		AGG	AGGG,AGT		downstream_gene_variant
+U00096	1525377		AGG	AGGG,AGT		intergenic_region
+U00096	1525377		AGG	AGGG,AGT		intergenic_region
+U00096	1527079		A	G		missense_variant
+U00096	1527079		A	G		upstream_gene_variant
+U00096	1527079		A	G		upstream_gene_variant
+U00096	1527079		A	G		upstream_gene_variant
+U00096	1527079		A	G		upstream_gene_variant
+U00096	1527079		A	G		upstream_gene_variant
+U00096	1527079		A	G		upstream_gene_variant
+U00096	1527079		A	G		downstream_gene_variant
+U00096	1527079		A	G		downstream_gene_variant
+U00096	1527079		A	G		downstream_gene_variant
+U00096	1527079		A	G		downstream_gene_variant
+U00096	1527291		G	T		missense_variant
+U00096	1527291		G	T		upstream_gene_variant
+U00096	1527291		G	T		upstream_gene_variant
+U00096	1527291		G	T		upstream_gene_variant
+U00096	1527291		G	T		upstream_gene_variant
+U00096	1527291		G	T		upstream_gene_variant
+U00096	1527291		G	T		upstream_gene_variant
+U00096	1527291		G	T		downstream_gene_variant
+U00096	1527291		G	T		downstream_gene_variant
+U00096	1527291		G	T		downstream_gene_variant
+U00096	1527291		G	T		downstream_gene_variant
+U00096	1527328		A	C		missense_variant
+U00096	1527328		A	C		upstream_gene_variant
+U00096	1527328		A	C		upstream_gene_variant
+U00096	1527328		A	C		upstream_gene_variant
+U00096	1527328		A	C		upstream_gene_variant
+U00096	1527328		A	C		upstream_gene_variant
+U00096	1527328		A	C		upstream_gene_variant
+U00096	1527328		A	C		downstream_gene_variant
+U00096	1527328		A	C		downstream_gene_variant
+U00096	1527328		A	C		downstream_gene_variant
+U00096	1527328		A	C		downstream_gene_variant
+U00096	1532370		G	T		missense_variant
+U00096	1532370		G	T		upstream_gene_variant
+U00096	1532370		G	T		downstream_gene_variant
+U00096	1532370		G	T		downstream_gene_variant
+U00096	1532370		G	T		downstream_gene_variant
+U00096	1532370		G	T		downstream_gene_variant
+U00096	1532370		G	T		downstream_gene_variant
+U00096	1532370		G	T		downstream_gene_variant
+U00096	1532370		G	T		downstream_gene_variant
+U00096	1532370		G	T		downstream_gene_variant
+U00096	1532370		G	T		downstream_gene_variant
+U00096	1532370		G	T		downstream_gene_variant
+U00096	1533613		T	C		synonymous_variant
+U00096	1533613		T	C		upstream_gene_variant
+U00096	1533613		T	C		downstream_gene_variant
+U00096	1533613		T	C		downstream_gene_variant
+U00096	1533613		T	C		downstream_gene_variant
+U00096	1533613		T	C		downstream_gene_variant
+U00096	1533613		T	C		downstream_gene_variant
+U00096	1533613		T	C		downstream_gene_variant
+U00096	1533613		T	C		downstream_gene_variant
+U00096	1533613		T	C		downstream_gene_variant