Mercurial > repos > iuc > snpsift
diff snpSift_macros.xml @ 3:20c7d583fec1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit fbc18d9128669e461e76ed13307ee88dd774afa5
| author | iuc |
|---|---|
| date | Mon, 12 Jun 2017 10:25:32 -0400 |
| parents | bf8c1526871b |
| children | 09d6806c609e |
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--- a/snpSift_macros.xml Mon Dec 05 12:11:18 2016 -0500 +++ b/snpSift_macros.xml Mon Jun 12 10:25:32 2017 -0400 @@ -1,33 +1,31 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="4.1">snpsift</requirement> + <requirement type="package" version="4.3.1p">snpsift</requirement> </requirements> </xml> - <xml name="stdio"> - <stdio> - <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> - <exit_code range="1:" level="fatal" description="Error" /> - </stdio> - </xml> - <token name="@CONDA_SNPSIFT_JAR_PATH@">if [ -z "\$SNPSIFT_JAR_PATH" ]; then export SNPSIFT_JAR_PATH=\$(dirname \$(readlink -e \$(which SnpSift))); fi</token> - <xml name="version_command"> - <version_command><![CDATA[ - if [ -z "$SNPSIFT_JAR_PATH" ]; then export SNPSIFT_JAR_PATH=$(dirname $(readlink -e $(which SnpSift))); fi && - java -jar "$SNPSIFT_JAR_PATH/SnpSift.jar" dbnsfp 2>&1|head -n 1 - ]]></version_command> - </xml> - <token name="@WRAPPER_VERSION@">4.1</token> - <token name="@EXTERNAL_DOCUMENTATION@"> + <xml name="stdio"> + <stdio> + <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> + <exit_code range="1:" level="fatal" description="Error" /> + </stdio> + </xml> + <token name="@CONDA_SNPSIFT_JAR_PATH@">if [ -z "\$SNPSIFT_JAR_PATH" ]; then export SNPSIFT_JAR_PATH=\$(dirname \$(readlink -e \$(which SnpSift))); fi</token> + <xml name="version_command"> + <version_command><![CDATA[ +SnpSift dbnsfp 2>&1|head -n 1 + ]]></version_command> + </xml> + <token name="@WRAPPER_VERSION@">4.3</token> + <token name="@EXTERNAL_DOCUMENTATION@"> +For details about this tool, please go to: -For details about this tool, please go to: - http://snpeff.sourceforge.net/SnpEff_manual.html - - </token> - <xml name="citations"> - <citations> - <citation type="doi">10.3389/fgene.2012.00035</citation> - <yield /> - </citations> - </xml> +- http://snpeff.sourceforge.net/SnpEff_manual.html + </token> + <xml name="citations"> + <citations> + <citation type="doi">10.3389/fgene.2012.00035</citation> + <yield /> + </citations> + </xml> </macros>