Mercurial > repos > iuc > snpsift_dbnsfp_generic

annotate readme.rst @ 0:0624d484adba draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author iuc
date Thu, 22 Jan 2015 09:08:45 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
0624d484adba Uploaded
iuc
parents:
diff changeset
1 These are galaxy tools for SnpEff a variant annotation and effect prediction tool by Pablo Cingolani.
0624d484adba Uploaded
iuc
parents:
diff changeset
2 It annotates and predicts the effects of variants on genes (such as amino acid changes).
0624d484adba Uploaded
iuc
parents:
diff changeset
3 ( http://snpeff.sourceforge.net/ )
0624d484adba Uploaded
iuc
parents:
diff changeset
4
0624d484adba Uploaded
iuc
parents:
diff changeset
5 This repository contains a tool_dependencies.xml file that will attempt to automatically install SnpEff and SnpSift.
0624d484adba Uploaded
iuc
parents:
diff changeset
6
0624d484adba Uploaded
iuc
parents:
diff changeset
7 SnpEff citation:
0624d484adba Uploaded
iuc
parents:
diff changeset
8 "A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.", Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. Fly (Austin). 2012 Apr-Jun;6(2):80-92. PMID: 22728672 [PubMed - in process]
0624d484adba Uploaded
iuc
parents:
diff changeset
9
0624d484adba Uploaded
iuc
parents:
diff changeset
10 SnpSift citation:
0624d484adba Uploaded
iuc
parents:
diff changeset
11 "Using Drosophila melanogaster as a model for genotoxic chemical mutational studies with a new program, SnpSift", Cingolani, P., et. al., Frontiers in Genetics, 3, 2012.