annotate test-data/test_dbnsfpdb.tabular @ 2:a7cbaf3beadd draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift_dbnsfp_generic/ commit bd4fbe120288bf8452e479cbd82aa1bbf5c4bd31

#chr	pos(1-coor)	ref	alt	aaref	aaalt	hg18_pos(1-coor)	genename	Uniprot_acc	Uniprot_id	Uniprot_aapos	Interpro_domain	cds_strand	refcodon	SLR_test_statistic 	codonpos	fold-degenerate	Ancestral_allele	Ensembl_geneid	Ensembl_transcriptid	aapos	aapos_SIFT	aapos_FATHMM	SIFT_score	SIFT_converted_rankscore	SIFT_pred	Polyphen2_HDIV_score	Polyphen2_HDIV_rankscore	Polyphen2_HDIV_pred	Polyphen2_HVAR_score	Polyphen2_HVAR_rankscore	Polyphen2_HVAR_pred	LRT_score	LRT_converted_rankscore	LRT_pred	MutationTaster_score	MutationTaster_converted_rankscore	MutationTaster_pred	MutationAssessor_score	MutationAssessor_rankscore	MutationAssessor_pred	FATHMM_score	FATHMM_rankscore	FATHMM_pred	RadialSVM_score	RadialSVM_rankscore	RadialSVM_pred	LR_score	LR_rankscore	LR_pred	Reliability_index	CADD_raw	CADD_raw_rankscore	CADD_phred	GERP++_NR	GERP++_RS	GERP++_RS_rankscore	phyloP46way_primate	phyloP46way_primate_rankscore	phyloP46way_placental	phyloP46way_placental_rankscore	phyloP100way_vertebrate	phyloP100way_vertebrate_rankscore	phastCons46way_primate	phastCons46way_primate_rankscore	phastCons46way_placental	phastCons46way_placental_rankscore	phastCons100way_vertebrate	phastCons100way_vertebrate_rankscore	SiPhy_29way_pi	SiPhy_29way_logOdds	SiPhy_29way_logOdds_rankscore	LRT_Omega	UniSNP_ids	1000Gp1_AC	1000Gp1_AF	1000Gp1_AFR_AC	1000Gp1_AFR_AF	1000Gp1_EUR_AC	1000Gp1_EUR_AF	1000Gp1_AMR_AC	1000Gp1_AMR_AF	1000Gp1_ASN_AC	1000Gp1_ASN_AF	ESP6500_AA_AF	ESP6500_EA_AF
1	69134	A	C	E	A	58997	OR4F5	Q8NH21	OR4F5_HUMAN	15	.	+	GAA	.	2	0	.	ENSG00000186092	ENST00000534990;ENST00000335137	63;15	ENSP00000334393:E15A	ENSP00000334393:E15A	0.03	0.62326	D	0.043	0.20261	B	0.037	0.21917	B	0.263780	0.15411	U	0.998654	0.22851	N	2.635	0.83312	M	7.42	0.00438	T	-0.9897	0.32693	T	0.0017	0.00524	T	10	-0.186758	0.06340	3.092	2.31	2.31	0.28768	0.327000	0.21459	1.014000	0.39417	0.296000	0.19083	0.475000	0.33008	0.951000	0.38953	0.000000	0.05858	1.0:0.0:0.0:0.0	8.5094	0.33208	0.481469	.	.	.	.	.	.	.	.	.	.	.	.	.
1	69134	A	G	E	G	58997	OR4F5	Q8NH21	OR4F5_HUMAN	15	.	+	GAA	.	2	0	.	ENSG00000186092	ENST00000534990;ENST00000335137	63;15	ENSP00000334393:E15G	ENSP00000334393:E15G	0.09	0.49607	T	0.0	0.02656	B	0.001	0.04013	B	0.263780	0.15411	N	0.998383	0.23043	N	2.055	0.67517	M	7.4	0.00444	T	-0.9720	0.37103	T	0.0013	0.00412	T	10	-0.469020	0.04445	1.834	2.31	2.31	0.28768	0.327000	0.21459	1.014000	0.39417	0.296000	0.19083	0.475000	0.33008	0.951000	0.38953	0.000000	0.05858	1.0:0.0:0.0:0.0	8.5094	0.33208	0.481469	.	.	.	.	.	.	.	.	.	.	.	.	.
1	69134	A	T	E	V	58997	OR4F5	Q8NH21	OR4F5_HUMAN	15	.	+	GAA	.	2	0	.	ENSG00000186092	ENST00000534990;ENST00000335137	63;15	ENSP00000334393:E15V	ENSP00000334393:E15V	0.03	0.62326	D	0.308	0.31100	B	0.18	0.34346	B	0.263780	0.15411	U	0.996706	0.23838	N	2.57	0.82056	M	7.39	0.00446	T	-1.0029	0.28902	T	0.0017	0.00524	T	10	0.661265	0.14645	7.544	2.31	2.31	0.28768	0.327000	0.21459	1.014000	0.39417	0.296000	0.19083	0.475000	0.33008	0.951000	0.38953	0.000000	0.05858	1.0:0.0:0.0:0.0	8.5094	0.33208	0.481469	.	.	.	.	.	.	.	.	.	.	.	.	.
4	100239319	T	A	H	L	100458342	ADH1B	A8MYN5	.	8	.	-	CAC	-1.2513	2	0	C	ENSG00000196616	ENST00000305046;ENST00000394887;ENST00000412614	48;8;48	ENSP00000306606:H48L	ENSP00000306606:H48L;ENSP00000378351:H8L	0	0.87932	D	0.021	0.17268	B	0.009	0.13407	B	0.001009	0.40818	N	0.962682	0.39176	D	1.11	0.37507	L	3.73;3.49	0.05139	T;T	-1.0300	0.19614	T	0.0167	0.06508	T	10	2.521929	0.44866	14.39	4.41	3.57	0.40892	-0.215000	0.12644	0.318000	0.23185	2.012000	0.40932	0.849000	0.48306	0.053000	0.19242	0.997000	0.39634	0.0:0.8397:0.0:0.1603	10.5345	0.44996	0.280785	.	.	.	.	.	.	.	.	.	.	.	.	.
4	100239319	T	C	H	R	100458342	ADH1B	A8MYN5	.	8	.	-	CAC	-1.2513	2	0	C	ENSG00000196616	ENST00000305046;ENST00000394887;ENST00000412614	48;8;48	ENSP00000306606:H48R	ENSP00000306606:H48R;ENSP00000378351:H8R	0.15	0.41790	T	0.0	0.02656	B	0.0	0.01281	B	0.001009	0.40818	N	0.848429	0.29591	P	.	.	.	3.8;3.52	0.04970	T;T	-0.9979	0.30416	T	0.0000	0.00012	T	8	0.445290	0.12164	6.418	4.41	3.57	0.40892	-0.215000	0.12644	0.318000	0.23185	2.012000	0.40932	0.849000	0.48306	0.053000	0.19242	0.997000	0.39634	0.0:0.8397:0.0:0.1603	10.5345	0.44996	0.280785	rs1229984;rs1789884;rs11537716;rs17028836;rs17856968;rs52797169;rs57624638;rs1229984	1723	0.7889194139194139	492	1.0	744	0.9815303430079155	332	0.9171270718232044	155	0.270979020979021	0.983886	0.953023
4	100239319	T	G	H	P	100458342	ADH1B	A8MYN5	.	8	.	-	CAC	-1.2513	2	0	C	ENSG00000196616	ENST00000305046;ENST00000394887;ENST00000412614	48;8;48	ENSP00000306606:H48P	ENSP00000306606:H48P;ENSP00000378351:H8P	0	0.87932	D	0.0	0.02656	B	0.002	0.06405	B	0.001009	0.40818	N	0.961891	0.39133	D	0.42	0.16602	N	3.72;3.47	0.05258	T;T	-0.9816	0.34750	T	0.0130	0.04815	T	10	2.210304	0.39003	13.35	4.41	3.57	0.40892	-0.215000	0.12644	0.318000	0.23185	2.012000	0.40932	0.849000	0.48306	0.053000	0.19242	0.997000	0.39634	0.0:0.8397:0.0:0.1603	10.5345	0.44996	0.280785	.	.	.	.	.	.	.	.	.	.	.	.	.