Mercurial > repos > iuc > snpsift_genesets
comparison snpSift_geneSets.xml @ 2:9ba6e2c298ab draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 44b3b8a31f9f912a3b754aef1d467a90a4ed3504
| author | iuc |
|---|---|
| date | Mon, 19 Sep 2016 14:43:55 -0400 |
| parents | 0af41de4eda1 |
| children | 847db7b39bdc |
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| 1:0af41de4eda1 | 2:9ba6e2c298ab |
|---|---|
| 8 </macros> | 8 </macros> |
| 9 <expand macro="requirements" /> | 9 <expand macro="requirements" /> |
| 10 <expand macro="stdio" /> | 10 <expand macro="stdio" /> |
| 11 <expand macro="version_command" /> | 11 <expand macro="version_command" /> |
| 12 <command><![CDATA[ | 12 <command><![CDATA[ |
| 13 @CONDA_SNPEFF_JAR_PATH@ && | |
| 13 java -Xmx2G -jar "\$SNPEFF_JAR_PATH/SnpSift.jar" geneSets -v | 14 java -Xmx2G -jar "\$SNPEFF_JAR_PATH/SnpSift.jar" geneSets -v |
| 14 #if $db_opts.db_opts_selector == "db" | 15 #if $db_opts.db_opts_selector == "db" |
| 15 "${db_opts.database.fields.path}" | 16 "${db_opts.database.fields.path}" |
| 16 #elif $db_opts.db_opts_selector == "histdb" | 17 #elif $db_opts.db_opts_selector == "histdb" |
| 17 "$db_opts.histdb" | 18 "$db_opts.histdb" |