diff snpSift_macros.xml @ 5:d12a810c837e draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift_genesets/ commit fbc18d9128669e461e76ed13307ee88dd774afa5

--- a/snpSift_macros.xml	Mon Dec 19 11:57:27 2016 -0500
+++ b/snpSift_macros.xml	Mon Jun 12 10:25:57 2017 -0400
@@ -1,33 +1,31 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="4.1">snpsift</requirement>
+            <requirement type="package" version="4.3.1p">snpsift</requirement>
         </requirements>
     </xml>
-  <xml name="stdio">
-    <stdio>
-        <exit_code range=":-1"  level="fatal" description="Error: Cannot open file" />
-        <exit_code range="1:"  level="fatal" description="Error" />
-    </stdio>
-  </xml>
-  <token name="@CONDA_SNPSIFT_JAR_PATH@">if [ -z "\$SNPSIFT_JAR_PATH" ]; then export SNPSIFT_JAR_PATH=\$(dirname \$(readlink -e \$(which SnpSift))); fi</token>
-  <xml name="version_command">
-    <version_command><![CDATA[
-    if [ -z "$SNPSIFT_JAR_PATH" ]; then export SNPSIFT_JAR_PATH=$(dirname $(readlink -e $(which SnpSift))); fi &&
-    java -jar "$SNPSIFT_JAR_PATH/SnpSift.jar" dbnsfp 2>&1|head -n 1
-    ]]></version_command>
-  </xml>
-  <token name="@WRAPPER_VERSION@">4.1</token>
-  <token name="@EXTERNAL_DOCUMENTATION@">
+    <xml name="stdio">
+        <stdio>
+            <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+    <token name="@CONDA_SNPSIFT_JAR_PATH@">if [ -z "\$SNPSIFT_JAR_PATH" ]; then export SNPSIFT_JAR_PATH=\$(dirname \$(readlink -e \$(which SnpSift))); fi</token>
+    <xml name="version_command">
+        <version_command><![CDATA[
+SnpSift dbnsfp 2>&1|head -n 1
+        ]]></version_command>
+    </xml>
+    <token name="@WRAPPER_VERSION@">4.3</token>
+    <token name="@EXTERNAL_DOCUMENTATION@">
+For details about this tool, please go to:
 
-For details about this tool, please go to:
-	http://snpeff.sourceforge.net/SnpEff_manual.html
-
-  </token>
-  <xml name="citations">
-      <citations>
-        <citation type="doi">10.3389/fgene.2012.00035</citation>
-        <yield />
-      </citations>
-  </xml>
+- http://snpeff.sourceforge.net/SnpEff_manual.html
+    </token>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.3389/fgene.2012.00035</citation>
+            <yield />
+        </citations>
+    </xml>
 </macros>