Mercurial > repos > iuc > sonneityping

comparison test-data/alleles.txt @ 0:db4fe7172114 draft

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"planemo upload for repository https://github.com/katholt/sonneityping commit 1b4231e8f98a234c29f57fef400f58f14645dc95"
author iuc
date Thu, 16 Sep 2021 06:52:18 +0000
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-1:000000000000 0:db4fe7172114
1 159897 C 1 Lineage I lineage1
2 204118 G 1.1 - lineage1.1
3 1173345 T 1.2 - lineage1.2
4 494060 C 1.3 - lineage1.3
5 434389 T 1.4 - lineage1.4
6 3465611 A 1.5 - lineage1.5
7 2164632 C 1.5.1 - lineage1.5.1
8 2138308 A 1.5.2 - lineage1.5.2
9 220353 T 1.5.3 - lineage1.5.3
10 1411472 A 1.6 - lineage1.6
11 59422 C 1.6.1 - lineage1.6.1
12 452958 G 1.6.2 - lineage1.6.2
13 4108759 A 1.6.3 - lineage1.6.3
14 4180475 A 1.6.4 - lineage1.6.4
15 4967081 G 2 Lineage II lineage2
16 3922942 A 2.1 - lineage2.1
17 81464 T 2.1.1 - lineage2.1.1
18 765305 T 2.1.2 - lineage2.1.2
19 1148833 T 2.1.3 - lineage2.1.3
20 2751379 A 2.1.4 - lineage2.1.4
21 3209745 G 2.1.5 - lineage2.1.5
22 2163231 A 2.1.6 - lineage2.1.6
23 4969251 T 2.1.7 - lineage2.1.7
24 3277620 A 2.1.8 - lineage2.1.8
25 2964241 C 2.2 - lineage2.2
26 3231002 A 2.3 - lineage2.3
27 3209436 A 2.4 - lineage2.4
28 4418301 A 2.4.1 - lineage2.4.1
29 1995501 A 2.4.2 - lineage2.4.2
30 2693836 A 2.4.3 - lineage2.4.3
31 3171681 A 2.5 - lineage2.5
32 2163325 A 2.5.1 - lineage2.5.1
33 2137487 T 2.5.2 - lineage2.5.2
34 3943215 A 2.6 - lineage2.6
35 3759854 C 2.6.1 - lineage2.6.1
36 2575942 T 2.6.2 - lineage2.6.2
37 3709499 T 2.7 - lineage2.7
38 4853458 T 2.7.1 - lineage2.7.1
39 527464 T 2.7.2 - lineage2.7.2
40 398556 A 2.7.3 - lineage2.7.3
41 149526 A 2.7.4 - lineage2.7.4
42 2582118 G 2.8 - lineage2.8
43 1658839 T 2.8.1 Korea II lineage2.8.1
44 4759777 C 2.8.2 - lineage2.8.2
45 3295184 A 2.9 Latin America IIa lineage2.9
46 159867 A 2.9.1 Latin America IIa lineage2.9.1
47 2161563 A 2.9.2 Latin America IIa lineage2.9.2
48 3687240 T 2.1 - lineage2.1
49 693457 T 2.10.1 Latin America IIa lineage2.10.1
50 3815385 T 2.10.2 Latin America IIa lineage2.10.2
51 689910 T 2.10.3 Latin America IIa lineage2.10.3
52 3658948 A 2.10.4 Latin America IIa lineage2.10.4
53 103132 G 2.10.5 Latin America IIa lineage2.10.5
54 12848 G 2.10.6 Latin America IIa lineage2.10.6
55 4568931 T 2.10.7 Latin America IIa lineage2.10.7
56 2019490 C 2.10.8 Latin America IIa lineage2.10.8
57 3780988 T 2.10.9 Latin America IIa lineage2.10.9
58 4655571 T 2.11 Latin America IIb lineage2.11
59 1097146 T 2.11.1 Latin America IIb lineage2.11.1
60 3643604 A 2.11.2 Latin America IIb lineage2.11.2
61 3231524 A 2.11.3 Latin America IIb lineage2.11.3
62 4315218 A 2.11.4 Latin America IIb lineage2.11.4
63 1039929 A 2.11.5 Latin America IIb lineage2.11.5
64 815462 T 2.12 Latin America IIb lineage2.12
65 4021481 A 2.12.1 Latin America IIb lineage2.12.1
66 3835124 A 2.12.2 Latin America IIb lineage2.12.2
67 2142799 A 2.12.3 Latin America IIb lineage2.12.3
68 1071597 G 2.12.4 Latin America IIb lineage2.12.4
69 59602 T 3 Lineage III lineage3
70 2834293 C 3.1 - lineage3.1
71 149058 A 3.2 - lineage3.2
72 1632620 C 3.3 - lineage3.3
73 635476 A 3.4 Latin America III lineage3.4
74 950923 T 3.4.1 Latin America III lineage3.4.1
75 1424781 T 3.4.2 Latin America III lineage3.4.2
76 2591332 G 3.4.3 Latin America III lineage3.4.3
77 2565078 T 3.4.4 Latin America III lineage3.4.4
78 3579150 T 3.4.5 Latin America III lineage3.4.5
79 1058810 T 3.4.6 Latin America III lineage3.4.6
80 1236451 G 3.5 - lineage3.5
81 3618381 A 3.6 Central Asia III lineage3.6
82 484124 T 3.6.1 CipR_parent lineage3.6.1
83 4639269 G 3.6.1.1 CipR lineage3.6.1.1
84 3861202 C 3.6.1.1.1 CipR.SEA lineage3.6.1.1.1
85 954442 T 3.6.1.1.2 CipR.MSM5 lineage3.6.1.1.2
86 2335724 T 3.6.1.1.3 CipR lineage3.6.1.1.3
87 3314208 T 3.6.1.1.3.1 CipR.MSM1 lineage3.6.1.1.3.1
88 3338871 A 3.6.2 Central Asia III lineage3.6.2
89 4134508 T 3.6.3 Central Asia III lineage3.6.3
90 985650 A 3.6.4 Central Asia III lineage3.6.4
91 4080478 A 3.7 Global III lineage3.7
92 3834998 G 3.7.1 Global III lineage3.7.1
93 2362814 A 3.7.3 Global III lineage3.7.3
94 3835031 T 3.7.4 Global III lineage3.7.4
95 1770481 T 3.7.5 Global III lineage3.7.5
96 2464143 A 3.7.6 Global III lineage3.7.6
97 4079006 T 3.7.7 Global III lineage3.7.7
98 3890722 A 3.7.8 Global III lineage3.7.8
99 2244329 C 3.7.9 Global III lineage3.7.9
100 2831896 A 3.7.10 Global III lineage3.7.10
101 2564547 A 3.7.11 Global III lineage3.7.11
102 2347512 A 3.7.12 Global III lineage3.7.12
103 2057175 A 3.7.13 Global III lineage3.7.13
104 3649319 A 3.7.14 Global III lineage3.7.14
105 3780349 C 3.7.15 Global III lineage3.7.15
106 1103408 T 3.7.16 Global III lineage3.7.16
107 498700 T 3.7.17 Global III lineage3.7.17
108 2052270 T 3.7.18 Global III lineage3.7.18
109 4599365 T 3.7.19 Global III lineage3.7.19
110 442220 T 3.7.20 Global III lineage3.7.20
111 643175 T 3.7.21 Global III lineage3.7.21
112 3624938 C 3.7.22 Global III lineage3.7.22
113 2188269 T 3.7.23 Global III lineage3.7.23
114 12692 A 3.7.24 Global III lineage3.7.24
115 3336178 T 3.7.25 MSM4 lineage3.7.25
116 656895 A 3.7.26 Global III lineage3.7.26
117 4249495 A 3.7.27 Global III lineage3.7.27
118 4716168 T 3.7.28 Global III lineage3.7.28
119 4223696 T 3.7.29 Global III VN lineage3.7.29
120 4149688 A 3.7.29.1 Global III VN2 lineage3.7.29.1
121 4248085 T 3.7.29.1.1 Global III VN3 lineage3.7.29.1.1
122 1695964 A 3.7.29.1.1.1 Global III VN3.KH2 lineage3.7.29.1.1.1
123 2392221 T 3.7.29.1.1.2 Global III VN4 lineage3.7.29.1.1.2
124 985914 T 3.7.29.1.2 Global III VN2.MSM2 lineage3.7.29.1.2
125 1058820 T 3.7.29.1.2.1 Global III VN2.MSM2.Aus lineage3.7.29.1.2.1
126 3638083 T 3.7.29.1.3 Global III VN2.Hue lineage3.7.29.1.3
127 2151320 T 3.7.29.1.4 Global III VN2.KH1 lineage3.7.29.1.4
128 294523 T 3.7.29.1.4.1 Global III VN2.KH1.Aus lineage3.7.29.1.4.1
129 1138004 G 3.7.30 Global III Middle East III lineage3.7.30
130 4117025 T 3.7.30.1 Global III Middle East III lineage3.7.30.1
131 185962 T 3.7.30.2 Global III Middle East III lineage3.7.30.2
132 4478931 T 3.7.30.3 Global III Middle East III lineage3.7.30.3
133 3082193 A 3.7.30.4 Global III Israel III lineage3.7.30.4
134 228956 T 3.7.30.4.1 Global III OJC lineage3.7.30.4.1
135 459285 T 3.7.31 Global III lineage3.7.31
136 4620311 T 3.7.32 Global III lineage3.7.32
137 2162977 A 3.7.33 Global III lineage3.7.33
138 3158047 T 3.8 - lineage3.8
139 3578187 T 3.9 - lineage3.9
140 4386138 G 3.10 - lineage3.10
141 4807527 T 4 Lineage IV lineage4
142 5824 T 5 Lineage V lineage5
143 3861343 G 5.1.1 - lineage5.1.1
144 4840210 T 5.1.2 - lineage5.1.2
145 3768799 A 5.1.3 - lineage5.1.3
146 4617179 G 5.1.4 - lineage5.1.4
147 1539008 T 5.1.5 - lineage5.1.5
148 1268677 T 5.1.6 - lineage5.1.6