Mercurial > repos > iuc > sonneityping
view test-data/alleles.txt @ 1:0ac12c344bfa draft default tip
planemo upload for repository https://github.com/katholt/sonneityping commit 4d048786a4cf9ecb045fa3263084f98105c15557
| author | iuc |
|---|---|
| date | Tue, 12 Mar 2024 15:37:17 +0000 |
| parents | db4fe7172114 |
| children |
line wrap: on
line source
159897 C 1 Lineage I lineage1 204118 G 1.1 - lineage1.1 1173345 T 1.2 - lineage1.2 494060 C 1.3 - lineage1.3 434389 T 1.4 - lineage1.4 3465611 A 1.5 - lineage1.5 2164632 C 1.5.1 - lineage1.5.1 2138308 A 1.5.2 - lineage1.5.2 220353 T 1.5.3 - lineage1.5.3 1411472 A 1.6 - lineage1.6 59422 C 1.6.1 - lineage1.6.1 452958 G 1.6.2 - lineage1.6.2 4108759 A 1.6.3 - lineage1.6.3 4180475 A 1.6.4 - lineage1.6.4 4967081 G 2 Lineage II lineage2 3922942 A 2.1 - lineage2.1 81464 T 2.1.1 - lineage2.1.1 765305 T 2.1.2 - lineage2.1.2 1148833 T 2.1.3 - lineage2.1.3 2751379 A 2.1.4 - lineage2.1.4 3209745 G 2.1.5 - lineage2.1.5 2163231 A 2.1.6 - lineage2.1.6 4969251 T 2.1.7 - lineage2.1.7 3277620 A 2.1.8 - lineage2.1.8 2964241 C 2.2 - lineage2.2 3231002 A 2.3 - lineage2.3 3209436 A 2.4 - lineage2.4 4418301 A 2.4.1 - lineage2.4.1 1995501 A 2.4.2 - lineage2.4.2 2693836 A 2.4.3 - lineage2.4.3 3171681 A 2.5 - lineage2.5 2163325 A 2.5.1 - lineage2.5.1 2137487 T 2.5.2 - lineage2.5.2 3943215 A 2.6 - lineage2.6 3759854 C 2.6.1 - lineage2.6.1 2575942 T 2.6.2 - lineage2.6.2 3709499 T 2.7 - lineage2.7 4853458 T 2.7.1 - lineage2.7.1 527464 T 2.7.2 - lineage2.7.2 398556 A 2.7.3 - lineage2.7.3 149526 A 2.7.4 - lineage2.7.4 2582118 G 2.8 - lineage2.8 1658839 T 2.8.1 Korea II lineage2.8.1 4759777 C 2.8.2 - lineage2.8.2 3295184 A 2.9 Latin America IIa lineage2.9 159867 A 2.9.1 Latin America IIa lineage2.9.1 2161563 A 2.9.2 Latin America IIa lineage2.9.2 3687240 T 2.1 - lineage2.1 693457 T 2.10.1 Latin America IIa lineage2.10.1 3815385 T 2.10.2 Latin America IIa lineage2.10.2 689910 T 2.10.3 Latin America IIa lineage2.10.3 3658948 A 2.10.4 Latin America IIa lineage2.10.4 103132 G 2.10.5 Latin America IIa lineage2.10.5 12848 G 2.10.6 Latin America IIa lineage2.10.6 4568931 T 2.10.7 Latin America IIa lineage2.10.7 2019490 C 2.10.8 Latin America IIa lineage2.10.8 3780988 T 2.10.9 Latin America IIa lineage2.10.9 4655571 T 2.11 Latin America IIb lineage2.11 1097146 T 2.11.1 Latin America IIb lineage2.11.1 3643604 A 2.11.2 Latin America IIb lineage2.11.2 3231524 A 2.11.3 Latin America IIb lineage2.11.3 4315218 A 2.11.4 Latin America IIb lineage2.11.4 1039929 A 2.11.5 Latin America IIb lineage2.11.5 815462 T 2.12 Latin America IIb lineage2.12 4021481 A 2.12.1 Latin America IIb lineage2.12.1 3835124 A 2.12.2 Latin America IIb lineage2.12.2 2142799 A 2.12.3 Latin America IIb lineage2.12.3 1071597 G 2.12.4 Latin America IIb lineage2.12.4 59602 T 3 Lineage III lineage3 2834293 C 3.1 - lineage3.1 149058 A 3.2 - lineage3.2 1632620 C 3.3 - lineage3.3 635476 A 3.4 Latin America III lineage3.4 950923 T 3.4.1 Latin America III lineage3.4.1 1424781 T 3.4.2 Latin America III lineage3.4.2 2591332 G 3.4.3 Latin America III lineage3.4.3 2565078 T 3.4.4 Latin America III lineage3.4.4 3579150 T 3.4.5 Latin America III lineage3.4.5 1058810 T 3.4.6 Latin America III lineage3.4.6 1236451 G 3.5 - lineage3.5 3618381 A 3.6 Central Asia III lineage3.6 484124 T 3.6.1 CipR_parent lineage3.6.1 4639269 G 3.6.1.1 CipR lineage3.6.1.1 3861202 C 3.6.1.1.1 CipR.SEA lineage3.6.1.1.1 954442 T 3.6.1.1.2 CipR.MSM5 lineage3.6.1.1.2 2335724 T 3.6.1.1.3 CipR lineage3.6.1.1.3 3314208 T 3.6.1.1.3.1 CipR.MSM1 lineage3.6.1.1.3.1 3338871 A 3.6.2 Central Asia III lineage3.6.2 4134508 T 3.6.3 Central Asia III lineage3.6.3 985650 A 3.6.4 Central Asia III lineage3.6.4 4080478 A 3.7 Global III lineage3.7 3834998 G 3.7.1 Global III lineage3.7.1 2362814 A 3.7.3 Global III lineage3.7.3 3835031 T 3.7.4 Global III lineage3.7.4 1770481 T 3.7.5 Global III lineage3.7.5 2464143 A 3.7.6 Global III lineage3.7.6 4079006 T 3.7.7 Global III lineage3.7.7 3890722 A 3.7.8 Global III lineage3.7.8 2244329 C 3.7.9 Global III lineage3.7.9 2831896 A 3.7.10 Global III lineage3.7.10 2564547 A 3.7.11 Global III lineage3.7.11 2347512 A 3.7.12 Global III lineage3.7.12 2057175 A 3.7.13 Global III lineage3.7.13 3649319 A 3.7.14 Global III lineage3.7.14 3780349 C 3.7.15 Global III lineage3.7.15 1103408 T 3.7.16 Global III lineage3.7.16 498700 T 3.7.17 Global III lineage3.7.17 2052270 T 3.7.18 Global III lineage3.7.18 4599365 T 3.7.19 Global III lineage3.7.19 442220 T 3.7.20 Global III lineage3.7.20 643175 T 3.7.21 Global III lineage3.7.21 3624938 C 3.7.22 Global III lineage3.7.22 2188269 T 3.7.23 Global III lineage3.7.23 12692 A 3.7.24 Global III lineage3.7.24 3336178 T 3.7.25 MSM4 lineage3.7.25 656895 A 3.7.26 Global III lineage3.7.26 4249495 A 3.7.27 Global III lineage3.7.27 4716168 T 3.7.28 Global III lineage3.7.28 4223696 T 3.7.29 Global III VN lineage3.7.29 4149688 A 3.7.29.1 Global III VN2 lineage3.7.29.1 4248085 T 3.7.29.1.1 Global III VN3 lineage3.7.29.1.1 1695964 A 3.7.29.1.1.1 Global III VN3.KH2 lineage3.7.29.1.1.1 2392221 T 3.7.29.1.1.2 Global III VN4 lineage3.7.29.1.1.2 985914 T 3.7.29.1.2 Global III VN2.MSM2 lineage3.7.29.1.2 1058820 T 3.7.29.1.2.1 Global III VN2.MSM2.Aus lineage3.7.29.1.2.1 3638083 T 3.7.29.1.3 Global III VN2.Hue lineage3.7.29.1.3 2151320 T 3.7.29.1.4 Global III VN2.KH1 lineage3.7.29.1.4 294523 T 3.7.29.1.4.1 Global III VN2.KH1.Aus lineage3.7.29.1.4.1 1138004 G 3.7.30 Global III Middle East III lineage3.7.30 4117025 T 3.7.30.1 Global III Middle East III lineage3.7.30.1 185962 T 3.7.30.2 Global III Middle East III lineage3.7.30.2 4478931 T 3.7.30.3 Global III Middle East III lineage3.7.30.3 3082193 A 3.7.30.4 Global III Israel III lineage3.7.30.4 228956 T 3.7.30.4.1 Global III OJC lineage3.7.30.4.1 459285 T 3.7.31 Global III lineage3.7.31 4620311 T 3.7.32 Global III lineage3.7.32 2162977 A 3.7.33 Global III lineage3.7.33 3158047 T 3.8 - lineage3.8 3578187 T 3.9 - lineage3.9 4386138 G 3.10 - lineage3.10 4807527 T 4 Lineage IV lineage4 5824 T 5 Lineage V lineage5 3861343 G 5.1.1 - lineage5.1.1 4840210 T 5.1.2 - lineage5.1.2 3768799 A 5.1.3 - lineage5.1.3 4617179 G 5.1.4 - lineage5.1.4 1539008 T 5.1.5 - lineage5.1.5 1268677 T 5.1.6 - lineage5.1.6